Functional clusters

Information

  • Type MapMan
  • Description Photosynthesis.photophosphorylation.photosystem II.PS-II complex

Cluster overview

Species Chromosome Experiment Cluster id Cluster size Number of genes E-value
Nelumbo nucifera scaffold020 1 CH_nnu_246 4 19 0.0000121227
Gossypium hirsutum D08 2 CH_ghi_652 3 3 0.000300351
Nelumbo nucifera scaffold020 2 CH_nnu_246 4 19 0.0000121227

Available child term results

Ontology identifier Description Number of clusters
1.1.1.2.1 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.reaction center complex 8
1.1.1.2.1.2 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.reaction center complex.component D2/PsbD 2
1.1.1.2.1.5 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.reaction center complex.cytochrome b559 heterodimer 4
1.1.1.2.1.5.1 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.reaction center complex.cytochrome b559 heterodimer.component alpha/PsbE 4
1.1.1.2.10 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbTn 15
1.1.1.2.11 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbW 18
1.1.1.2.12 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbX 20
1.1.1.2.13 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbY 1
1.1.1.2.2.1 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic components.component OEC33/PsbO 4
1.1.1.2.2.2 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic components.component OEC23/PsbP 12
1.1.1.2.2.3 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.oxygen-evolving center (OEC) extrinsic components.component OEC16/PsbQ 4
1.1.1.2.5 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbK 2
1.1.1.2.7 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbM 2
1.1.1.2.8 Photosynthesis.photophosphorylation.photosystem II.PS-II complex.component PsbR 12

Functional Clusters Experiments

Exp id Data type Data filter Min genes cluster Max genes cluster Max cluster size E-value Tandems removal
1 MapMan No filter applied. 2 30 80 0.001
2 MapMan No filter applied. 2 30 80 0.001
3 GO All GO data. 2 30 80 0.001
4 GO All GO data. 2 30 80 0.001
5 InterPro No filter applied. 2 30 80 0.001
6 InterPro No filter applied. 2 30 80 0.001