Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p16560 Brassica napus
A08p27580 Brassica napus
A09p40260 Brassica napus
Aa31LG7G8260 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4149 Anthoceros agrestis
Actinidia04038 Actinidia chinensis
Ah.03g135170 Amaranthus hybridus
AL1G38720 Arabidopsis lyrata
Aqoxy3G03361 Aquilegia oxysepala
Aqoxy5G03781 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.ITG5Q4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K7EFN7 Arachis hypogaea
AT1G26840 Arabidopsis thaliana
ATR0800G170 Amborella trichopoda
Atru.chr11.1801 Acer truncatum
AUR62005767 Chenopodium quinoa
AUR62028790 Chenopodium quinoa
BcaB03g12011 Brassica carinata
BcaC05g26381 Brassica carinata
BcaC07g39267 Brassica carinata
BolC5t30653H Brassica oleracea
BolC5t31146H Brassica oleracea
BolC8t49912H Brassica oleracea
BraA08t34696Z Brassica rapa
BraA09t39524Z Brassica rapa
C05p19510 Brassica napus
C05p24110 Brassica napus
C08p22760 Brassica napus
CAN.G58.35 Capsicum annuum
CANSAT64G1560 Cannabis sativa
CARHR025060 Cardamine hirsuta
CARHR062650 Cardamine hirsuta
Carub.0001s2410 Capsella rubella
Ca_24263_v3 Cicer arietinum L.
CBR_g31090 Chara braunii
Cc11_g13100 Coffea canephora
CDE04G3358 Ceratophyllum demersum
CDE08G0800 Ceratophyllum demersum
Ciclev10032310m.g Citrus clementina
CiPaw.05G136500 Carya illinoinensis
CiPaw.06G083900 Carya illinoinensis
ClCG11G009310 Citrullus lanatus
COL.COLO4_22996 Corchorus olitorius
Cpa.g.sc128.14 Carica papaya
Cre06.g285650 Chlamydomonas reinhardtii
CsaV3_2G010800 Cucumis sativus L.
CSS0000565 Camellia sinensis var. sinensis
CSS0029182 Camellia sinensis var. sinensis
DCAR_007149 Daucus carota
Dinv16637 Davidia involucrata
Duzib268G0036 Durio zibethinus
ECA233G1872 Erigeron canadensis
EL10Ac2g04116 Beta vulgaris
EL10Ac6g13193 Beta vulgaris
Eucgr.B03435 Eucalyptus grandis
FAN07G1510 Fragaria x ananassa
FAN12G2116 Fragaria x ananassa
FAN17G1817 Fragaria x ananassa
FAN22G2174 Fragaria x ananassa
FvH4_4g31460 Fragaria vesca
Glyma.01G046400 Glycine max
Glyma.02G106600 Glycine max
Gohir.A01G134350 Gossypium hirsutum
Gohir.A07G052500 Gossypium hirsutum
Gohir.A08G223448 Gossypium hirsutum
Gohir.A13G074000 Gossypium hirsutum
Gohir.D13G074100 Gossypium hirsutum
Gorai.013G084700 Gossypium raimondii
GSVIVG01020002001 Vitis vinifera
HanXRQChr08g0210501 Helianthus annuus
HanXRQChr12g0362561 Helianthus annuus
HanXRQChr13g0418021 Helianthus annuus
Haze_12020 Corylus avellana
HPP92_016908 Vanilla planifolia
Hund25250 Selenicereus undatus
Lalb_Chr10g0098211 Lupinus albus
Lalb_Chr17g0340601 Lupinus albus
Lj2g0007835 Lotus japonicus
Lj3A1038G72 Lonicera japonica
Lsat_1_v5_gn_8_52860 Lactuca sativa
Manes.01G186500 Manihot esculenta
Mapoly0064s0110 Marchantia polymorpha
MBI02_g14195_MAGBIO Magnolia biondii
MBI05_g01300_MAGBIO Magnolia biondii
MBI05_g35443_MAGBIO Magnolia biondii
MBI09_g01021_MAGBIO Magnolia biondii
MBI10_g06043_MAGBIO Magnolia biondii
MBI10_g44256_MAGBIO Magnolia biondii
MBI10_g47167_MAGBIO Magnolia biondii
MD13G1073100 Malus domestica
MD16G1073900 Malus domestica
MD16G1074100 Malus domestica
Medtr5g040250 Medicago truncatula
Medtr7g039370 Medicago truncatula
MELO3C008530.2 Cucumis melo
Migut.L01304 Erythranthe guttata
MSTRG.7808 Avicennia marina
Nitab4.5_0000703g0120 Nicotiana tabacum
Nitab4.5_0012364g0020 Nicotiana tabacum
Nn3g17219 Nelumbo nucifera
Oeu001572.1 Olea europaea
Oeu054889.1 Olea europaea
Oeu054890.1 Olea europaea
Os07g0628600 Oryza sativa ssp. japonica
Peaxi162Scf00541g00527 Petunia axillaris
PGR102G3009 Punica granatum
PGSC0003DMG400003384 Solanum tuberosum
Phvul.002G086150 Phaseolus vulgaris
Potri.011G083700 Populus trichocarpa
Pp3c13_2030 Physcomitrium patens
PRCOL_00006308 Prasinoderma coloniale
Prupe.1G273100 Prunus persica
Psat0s2466g0040 Pisum sativum
Psat2g121160 Pisum sativum
PSO017G4882 Papaver somniferum
PSO478G0089 Papaver somniferum
QL03p064370 Quercus lobata
RcHm_v2.0_Chr4g0439951 Rosa chinensis
Rhsim07G0243500 Rhododendron simsii
Sabra11G0066400 Salix brachista
SalBow2G2171 Salvia bowleyana
Sc11g0001860 Simmondsia chinensis
Sed0002473 Sechium edule
Sed0021592 Sechium edule
SEGI_09090 Sequoiadendron giganteum
SGA_v2.0_scaffold302G47825 Striga asiatica
SGA_v2.0_scaffold53G19380 Striga asiatica
SHI55061 Sapria himalayana
SMO114G0050 Selaginella moellendorffii
SMO117G0352 Selaginella moellendorffii
SMO254G0005 Selaginella moellendorffii
SMO254G0007 Selaginella moellendorffii
SMO254G0008 Selaginella moellendorffii
SMO254G0011 Selaginella moellendorffii
SMO254G0019 Selaginella moellendorffii
Solyc05g007450.3 Solanum lycopersicum
Sopen05g003330 Solanum pennellii
Sp1g21940 Schrenkiella parvula
Sp5g24800 Schrenkiella parvula
TAR622G0412 Trochodendron aralioides
TAR629G2466 Trochodendron aralioides
THA.LOC104822117 Tarenaya hassleriana
Thecc.02G351000 Theobroma cacao
Thecc.03G087000 Theobroma cacao
Thhalv10008398m.g Eutrema salsugineum
TPR.G37129 Trifolium pratense
TWI12G0809 Tripterygium wilfordii
unitig_22.g6910 Utricularia gibba
vmacro04307 Vaccinium macrocarpon
VMungo1215G3365 Vigna mungo
Zm00001eb328260 Zea mays

User provided reference genes

Program Settings