Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p01530 Brassica napus
A03p01540 Brassica napus
A05p38840 Brassica napus
A10p32020 Brassica napus
Aa31LG1G21200 Aethionema arabicum
Aa31LG3G2850 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.2859 Anthoceros agrestis
Actinidia01829 Actinidia chinensis
Ah.04g150900 Amaranthus hybridus
AL3G21600 Arabidopsis lyrata
AL6G13730 Arabidopsis lyrata
AL6G13750 Arabidopsis lyrata
Aqoxy2G00418 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.20HJGU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L41URX Arachis hypogaea
AT3G10270 Arabidopsis thaliana
AT5G04110 Arabidopsis thaliana
AT5G04130 Arabidopsis thaliana
ATR0759G018 Amborella trichopoda
Atru.chr1.1433 Acer truncatum
AUR62018352 Chenopodium quinoa
AUR62030314 Chenopodium quinoa
BcaB01g05766 Brassica carinata
BcaB01g05767 Brassica carinata
BcaB01g05883 Brassica carinata
BcaB05g21771 Brassica carinata
BcaB05g21815 Brassica carinata
BcaC03g12954 Brassica carinata
BcaNung05531 Brassica carinata
BolC2t06138H Brassica oleracea
BolC3t12741H Brassica oleracea
BolC5t34443H Brassica oleracea
BolC9t60013H Brassica oleracea
BraA02t04801Z Brassica rapa
BraA03t09530Z Brassica rapa
BraA05t22675Z Brassica rapa
BraA10t45246Z Brassica rapa
C02p01820 Brassica napus
C03p01880 Brassica napus
C05p57880 Brassica napus
C09p72740 Brassica napus
CAN.G8.29 Capsicum annuum
CANSAT64G1720 Cannabis sativa
CARHR084750 Cardamine hirsuta
CARHR209140 Cardamine hirsuta
CARHR209160 Cardamine hirsuta
Carub.0003s0945 Capsella rubella
Carub.0006s0306 Capsella rubella
Carub.0006s0308 Capsella rubella
Ca_08389_v3 Cicer arietinum L.
Ca_28876_v3 Cicer arietinum L.
CBR_g48715 Chara braunii
Cc06_g19400 Coffea canephora
CDE02G1045 Ceratophyllum demersum
CDE04G2160 Ceratophyllum demersum
Cfa020002 Carpinus fangiana
Ciclev10004438m.g Citrus clementina
CiPaw.09G048200 Carya illinoinensis
ClCG04G005580 Citrullus lanatus
COL.COLO4_21471 Corchorus olitorius
COL.COLO4_37451 Corchorus olitorius
Cpa.g.sc5.163 Carica papaya
Cre10.g440750 Chlamydomonas reinhardtii
CsaV3_4G029550 Cucumis sativus L.
CSS0010587 Camellia sinensis var. sinensis
CSS0025536 Camellia sinensis var. sinensis
CSS0027330 Camellia sinensis var. sinensis
CSS0028458 Camellia sinensis var. sinensis
DCAR_020575 Daucus carota
Dinv06172 Davidia involucrata
Duzib128G0786 Durio zibethinus
ECA248G1744 Erigeron canadensis
EL10Ac3g07244 Beta vulgaris
Eucgr.A02236 Eucalyptus grandis
FAN02G4022 Fragaria x ananassa
FAN05G2619 Fragaria x ananassa
FAN09G4102 Fragaria x ananassa
FvH4_6g25390 Fragaria vesca
Glyma.03G127300 Glycine max
Glyma.19G130000 Glycine max
Gohir.A02G105903 Gossypium hirsutum
Gohir.D03G073100 Gossypium hirsutum
Gorai.003G086700 Gossypium raimondii
GSVIVG01033639001 Vitis vinifera
HanXRQChr01g0008211 Helianthus annuus
Haze_20232 Corylus avellana
HPP92_006583 Vanilla planifolia
HPP92_028465 Vanilla planifolia
Hund19091 Selenicereus undatus
Lalb_Chr14g0365791 Lupinus albus
Lj1C1090G8 Lonicera japonica
Lj1g0011822 Lotus japonicus
Lsat_1_v5_gn_5_157080 Lactuca sativa
Manes.09G004300 Manihot esculenta
Mapoly0001s0398 Marchantia polymorpha
MCO09G035 Micromonas commoda
MD12G1095800 Malus domestica
MD14G1090600 Malus domestica
Medtr7g089790 Medicago truncatula
MELO3C019090.2 Cucumis melo
Migut.J01650 Erythranthe guttata
MSTRG.19800 Avicennia marina
Nitab4.5_0004224g0030 Nicotiana tabacum
Nitab4.5_0005254g0010 Nicotiana tabacum
Nn7g36800 Nelumbo nucifera
Oeu053358.4 Olea europaea
Os01g0268300 Oryza sativa ssp. japonica
Peaxi162Scf00076g00421 Petunia axillaris
PGR031G2678 Punica granatum
Phvul.001G123100 Phaseolus vulgaris
Potri.006G039400 Populus trichocarpa
Potri.016G036200 Populus trichocarpa
Pp3c19_5200 Physcomitrium patens
Pp3c22_3710 Physcomitrium patens
PRCOL_00004441 Prasinoderma coloniale
Prupe.7G033800 Prunus persica
Psat3g079040 Pisum sativum
PSO339G2693 Papaver somniferum
PSO384G4619 Papaver somniferum
QL07p011017 Quercus lobata
RcHm_v2.0_Chr2g0125831 Rosa chinensis
Rhsim03G0038900 Rhododendron simsii
Sabra06G0026500 Salix brachista
Sabra16G0038300 Salix brachista
Sabra16G0038600 Salix brachista
SalBow1G3529 Salvia bowleyana
SalBow1G6386 Salvia bowleyana
SalBow6G5823 Salvia bowleyana
Sc13g0001110 Simmondsia chinensis
Sed0017237 Sechium edule
SEGI_00826 Sequoiadendron giganteum
SEGI_12490 Sequoiadendron giganteum
SEGI_36072 Sequoiadendron giganteum
SGA_v2.0_scaffold105G30285 Striga asiatica
SGA_v2.0_scaffold3G01719 Striga asiatica
SGA_v2.0_scaffold69G23158 Striga asiatica
SHI24526 Sapria himalayana
SMO356G0312 Selaginella moellendorffii
Solyc12g021230.2 Solanum lycopersicum
Sopen12g011160 Solanum pennellii
Sp3g08540 Schrenkiella parvula
Sp6g38620 Schrenkiella parvula
Sp6g38630 Schrenkiella parvula
TAR636G2487 Trochodendron aralioides
THA.LOC104816412 Tarenaya hassleriana
THA.LOC104826889 Tarenaya hassleriana
Thecc.05G129200 Theobroma cacao
Thhalv10012781m.g Eutrema salsugineum
Thhalv10020150m.g Eutrema salsugineum
TPR.G34631 Trifolium pratense
TWI77G0996 Tripterygium wilfordii
unitig_899.g15645 Utricularia gibba
vmacro07788 Vaccinium macrocarpon
vmacro11506 Vaccinium macrocarpon
VMungo1383G0013 Vigna mungo
Zm00001eb128720 Zea mays

User provided reference genes

Program Settings