Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p25120 Brassica napus
A08p09310 Brassica napus
A09p33990 Brassica napus
Aa31LG2G13800 Aethionema arabicum
Actinidia14779 Actinidia chinensis
Actinidia18135 Actinidia chinensis
AL1G46340 Arabidopsis lyrata
AL4G31570 Arabidopsis lyrata
Aqoxy7G03666 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.KG0UNZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z3U2VZ Arachis hypogaea
AT1G32210 Arabidopsis thaliana
AT2G35520 Arabidopsis thaliana
ATR0626G058 Amborella trichopoda
Atru.chr6.1524 Acer truncatum
AUR62036328 Chenopodium quinoa
BcaB03g13752 Brassica carinata
BcaB04g17995 Brassica carinata
BcaB07g32895 Brassica carinata
BcaC05g27252 Brassica carinata
BolC3t13671H Brassica oleracea
BolC5t31884H Brassica oleracea
BolC5t32648H Brassica oleracea
BolC8t47998H Brassica oleracea
BraA05t21392Z Brassica rapa
BraA08t32929Z Brassica rapa
BraA09t38945Z Brassica rapa
C05p31610 Brassica napus
C05p39130 Brassica napus
CAN.G1987.1 Capsicum annuum
CAN.G726.24 Capsicum annuum
CARHR031580 Cardamine hirsuta
CARHR129690 Cardamine hirsuta
Carub.0001s3054 Capsella rubella
Carub.0004s1721 Capsella rubella
Ca_25178_v3 Cicer arietinum L.
Ca_27048_v3 Cicer arietinum L.
CBR_g15971 Chara braunii
Cc08_g03470 Coffea canephora
CDE08G0196 Ceratophyllum demersum
Cfa012506 Carpinus fangiana
Ciclev10002883m.g Citrus clementina
Ciclev10013120m.g Citrus clementina
CiPaw.11G098400 Carya illinoinensis
CiPaw.12G068300 Carya illinoinensis
ClCG10G001270 Citrullus lanatus
COL.COLO4_16940 Corchorus olitorius
Cpa.g.sc42.149 Carica papaya
Cre02.g108400 Chlamydomonas reinhardtii
CsaV3_3G001340 Cucumis sativus L.
CSS0013599 Camellia sinensis var. sinensis
CSS0033679 Camellia sinensis var. sinensis
CSS0046263 Camellia sinensis var. sinensis
DCAR_008222 Daucus carota
Dinv25260 Davidia involucrata
Dinv29003 Davidia involucrata
Duzib084G0048 Durio zibethinus
Duzib205G0471 Durio zibethinus
ECA240G0094 Erigeron canadensis
EL10Ac5g11811 Beta vulgaris
Eucgr.H00688 Eucalyptus grandis
FAN15G2154 Fragaria x ananassa
FAN20G1930 Fragaria x ananassa
FAN24G1987 Fragaria x ananassa
FAN27G1914 Fragaria x ananassa
FvH4_2g00930 Fragaria vesca
Glyma.09G207800 Glycine max
Glyma.14G201900 Glycine max
Gohir.A03G000033 Gossypium hirsutum
Gohir.A12G206100 Gossypium hirsutum
Gohir.D03G176200 Gossypium hirsutum
Gohir.D12G208400 Gossypium hirsutum
Gorai.003G185400 Gossypium raimondii
Gorai.008G224000 Gossypium raimondii
GSVIVG01013064001 Vitis vinifera
HanXRQChr06g0172781 Helianthus annuus
HanXRQChr13g0414241 Helianthus annuus
Haze_08163 Corylus avellana
Hma1.2p1_0870F.1_g230890 Hydrangea macrophylla
Hma1.2p1_0890F.1_g233090 Hydrangea macrophylla
HPP92_025445 Vanilla planifolia
HPP92_025493 Vanilla planifolia
Hund10776 Selenicereus undatus
Hund15006 Selenicereus undatus
Lalb_Chr05g0215751 Lupinus albus
Lalb_Chr16g0381071 Lupinus albus
Lj2g0004535 Lotus japonicus
Lj4g0004552 Lotus japonicus
Lsat_1_v5_gn_3_19181 Lactuca sativa
Lsat_1_v5_gn_6_80060 Lactuca sativa
Manes.04G055632 Manihot esculenta
Manes.12G090054 Manihot esculenta
Mapoly0046s0003 Marchantia polymorpha
MBI02_g15155_MAGBIO Magnolia biondii
MD05G1007700 Malus domestica
MD10G1005100 Malus domestica
Medtr3g023120 Medicago truncatula
Medtr5g029240 Medicago truncatula
Migut.A01174 Erythranthe guttata
Migut.E00744 Erythranthe guttata
MSTRG.12178 Avicennia marina
Nitab4.5_0000529g0110 Nicotiana tabacum
Nitab4.5_0000556g0250 Nicotiana tabacum
Nitab4.5_0004528g0030 Nicotiana tabacum
Nn1g00212 Nelumbo nucifera
Nn3g19387 Nelumbo nucifera
Oeu027093.1 Olea europaea
Os04g0397000 Oryza sativa ssp. japonica
Peaxi162Scf00045g00321 Petunia axillaris
Peaxi162Scf00170g00812 Petunia axillaris
PGR031G0362 Punica granatum
PGR031G2119 Punica granatum
PGSC0003DMG400014795 Solanum tuberosum
PGSC0003DMG400018505 Solanum tuberosum
Phvul.002G136700 Phaseolus vulgaris
Potri.001G136800 Populus trichocarpa
Potri.003G096800 Populus trichocarpa
Pp3c1_6120 Physcomitrium patens
Pp3c2_30990 Physcomitrium patens
Prupe.4G286900 Prunus persica
Prupe.8G007900 Prunus persica
Psat2g139040 Pisum sativum
Psat5g213400 Pisum sativum
PSO339G1317 Papaver somniferum
PSO384G3027 Papaver somniferum
PSO541G6011 Papaver somniferum
PSO675G8737 Papaver somniferum
QL12p001650 Quercus lobata
RcHm_v2.0_Chr6g0251281 Rosa chinensis
RcHm_v2.0_Chr6g0251311 Rosa chinensis
RcHm_v2.0_Chr6g0251331 Rosa chinensis
Rhsim07G0132100 Rhododendron simsii
Rhsim11G0021700 Rhododendron simsii
Sabra01G0105900 Salix brachista
Sabra03G0065300 Salix brachista
SalBow1G7612 Salvia bowleyana
Sc01g0005580 Simmondsia chinensis
Sc24g0004110 Simmondsia chinensis
Sed0012676 Sechium edule
SEGI_22391 Sequoiadendron giganteum
SGA_v2.0_scaffold198G41072 Striga asiatica
SGA_v2.0_scaffold36G14295 Striga asiatica
SMO117G0136 Selaginella moellendorffii
Solyc08g076460.3 Solanum lycopersicum
Sopen08g025040 Solanum pennellii
Sp1g27890 Schrenkiella parvula
TAR375G0183 Trochodendron aralioides
THA.LOC104798491 Tarenaya hassleriana
THA.LOC104814414 Tarenaya hassleriana
Thecc.03G310300 Theobroma cacao
Thhalv10009144m.g Eutrema salsugineum
Thhalv10017441m.g Eutrema salsugineum
TPR.G19425 Trifolium pratense
TPR.G31993 Trifolium pratense
TPR.G36203 Trifolium pratense
TWI60G0023 Tripterygium wilfordii
TWI81G0111 Tripterygium wilfordii
unitig_899.g15442 Utricularia gibba
vmacro00278 Vaccinium macrocarpon
VMungo1215G3227 Vigna mungo
Zm00001eb379050 Zea mays

User provided reference genes

Program Settings