Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p23320 Brassica napus
A09p66790 Brassica napus
A10p05370 Brassica napus
Actinidia09088 Actinidia chinensis
Actinidia19984 Actinidia chinensis
Ah.02g111440 Amaranthus hybridus
Ah.11g049940 Amaranthus hybridus
AL1G16790 Arabidopsis lyrata
AL4G25460 Arabidopsis lyrata
Aqoxy5G00341 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.8S3F40 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K5JQSH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L27P26 Arachis hypogaea
AT1G06780 Arabidopsis thaliana
AT2G30575 Arabidopsis thaliana
ATR0665G395 Amborella trichopoda
Atru.chr5.1587 Acer truncatum
AUR62011935 Chenopodium quinoa
AUR62032251 Chenopodium quinoa
BcaB02g06757 Brassica carinata
BcaC02g07996 Brassica carinata
BcaC05g24650 Brassica carinata
BcaC07g42049 Brassica carinata
BcaC07g42537 Brassica carinata
BolC4t27470H Brassica oleracea
BolC5t29267H Brassica oleracea
BraA04t17860Z Brassica rapa
BraA09t42017Z Brassica rapa
BraA10t42801Z Brassica rapa
C04p59620 Brassica napus
C08p51010 Brassica napus
CAN.G1116.10 Capsicum annuum
CAN.G551.32 Capsicum annuum
CANSAT35G1302 Cannabis sativa
CARHR006470 Cardamine hirsuta
CARHR124040 Cardamine hirsuta
Carub.0001s0610 Capsella rubella
Carub.0004s1173 Capsella rubella
Ca_08648_v3 Cicer arietinum L.
Ca_09711_v3 Cicer arietinum L.
Cc01_g18780 Coffea canephora
CDE07G1311 Ceratophyllum demersum
Cfa002335 Carpinus fangiana
Ciclev10019396m.g Citrus clementina
CiPaw.03G258200 Carya illinoinensis
CiPaw.04G182500 Carya illinoinensis
ClCG09G007610 Citrullus lanatus
COL.COLO4_05099 Corchorus olitorius
Cpa.g.sc52.137 Carica papaya
CsaV3_7G027500 Cucumis sativus L.
CSS0011315 Camellia sinensis var. sinensis
DCAR_005873 Daucus carota
Dinv22473 Davidia involucrata
Dinv34575 Davidia involucrata
Duzib133G0757 Durio zibethinus
Duzib138G1195 Durio zibethinus
ECA247G1644 Erigeron canadensis
EL10Ac5g10459 Beta vulgaris
Eucgr.B01494 Eucalyptus grandis
FAN15G2099 Fragaria x ananassa
FAN24G3094 Fragaria x ananassa
FAN27G0932 Fragaria x ananassa
FvH4_2g22460 Fragaria vesca
Glyma.02G141600 Glycine max
Glyma.03G159200 Glycine max
Glyma.10G032400 Glycine max
Glyma.19G161500 Glycine max
Gohir.A07G209500 Gossypium hirsutum
Gohir.A08G061801 Gossypium hirsutum
Gohir.A08G188500 Gossypium hirsutum
Gohir.A11G127800 Gossypium hirsutum
Gohir.D07G215600 Gossypium hirsutum
Gohir.D08G070800 Gossypium hirsutum
Gohir.D08G206900 Gossypium hirsutum
Gohir.D11G133200 Gossypium hirsutum
Gohir.D11G133250 Gossypium hirsutum
Gorai.001G243400 Gossypium raimondii
Gorai.004G074600 Gossypium raimondii
Gorai.004G219100 Gossypium raimondii
Gorai.007G142400 Gossypium raimondii
GSVIVG01000744001 Vitis vinifera
HanXRQChr00c0494g0575111 Helianthus annuus
HanXRQChr04g0109921 Helianthus annuus
HanXRQChr10g0281441 Helianthus annuus
Haze_24539 Corylus avellana
Hma1.2p1_0172F.1_g076250 Hydrangea macrophylla
HPP92_021294 Vanilla planifolia
Hund02885 Selenicereus undatus
Hund02886 Selenicereus undatus
Hund09574 Selenicereus undatus
Lalb_Chr01g0019871 Lupinus albus
Lj1C59T11 Lonicera japonica
Lj1g0001856 Lotus japonicus
Lj2C1158G6 Lonicera japonica
Lj5g0002763 Lotus japonicus
Lsat_1_v5_gn_9_9781 Lactuca sativa
Manes.05G084900 Manihot esculenta
MBI04_g06859_MAGBIO Magnolia biondii
MBI11_g02056_MAGBIO Magnolia biondii
MD05G1204900 Malus domestica
MD10G1192000 Malus domestica
Medtr1g070490 Medicago truncatula
Medtr7g096160 Medicago truncatula
MELO3C015774.2 Cucumis melo
Migut.D00379 Erythranthe guttata
MSTRG.18292 Avicennia marina
MSTRG.21510 Avicennia marina
Nitab4.5_0001201g0050 Nicotiana tabacum
Nitab4.5_0001478g0070 Nicotiana tabacum
Nitab4.5_0002315g0070 Nicotiana tabacum
Nitab4.5_0008157g0030 Nicotiana tabacum
Nn1g02578 Nelumbo nucifera
Nn3g19518 Nelumbo nucifera
Oeu025796.4 Olea europaea
Oeu058805.1 Olea europaea
Os11g0592300 Oryza sativa ssp. japonica
Peaxi162Scf00062g00420 Petunia axillaris
Peaxi162Scf00347g00089 Petunia axillaris
PGR119G1824 Punica granatum
PGSC0003DMG400007896 Solanum tuberosum
PGSC0003DMG402003179 Solanum tuberosum
Phvul.001G157200 Phaseolus vulgaris
Phvul.007G177400 Phaseolus vulgaris
Potri.005G218900 Populus trichocarpa
Prupe.8G231500 Prunus persica
Psat3g060120 Pisum sativum
Psat3g060520 Pisum sativum
Psat6g057560 Pisum sativum
PSO210G2660 Papaver somniferum
PSO210G5533 Papaver somniferum
PSO238G0045 Papaver somniferum
PSO832G0818 Papaver somniferum
QL12p042788 Quercus lobata
RcHm_v2.0_Chr6g0289401 Rosa chinensis
Rhsim13G0031200 Rhododendron simsii
Rhsim13G0061800 Rhododendron simsii
Sabra05G0167900 Salix brachista
SalBow4G2578 Salvia bowleyana
Sc17g0000950 Simmondsia chinensis
Sc24g0004330 Simmondsia chinensis
Sed0011195 Sechium edule
SGA_v2.0_scaffold138G35270 Striga asiatica
SGA_v2.0_scaffold1G00562 Striga asiatica
Solyc07g005360.3 Solanum lycopersicum
Solyc12g010200.2 Solanum lycopersicum
Sopen07g001420 Solanum pennellii
Sopen12g005060 Solanum pennellii
Sp1g05510 Schrenkiella parvula
Sp4g13120 Schrenkiella parvula
TAR365G0332 Trochodendron aralioides
TAR636G0227 Trochodendron aralioides
THA.LOC104815829 Tarenaya hassleriana
THA.LOC104826256 Tarenaya hassleriana
Thecc.01G266700 Theobroma cacao
Thhalv10007109m.g Eutrema salsugineum
Thhalv10016398m.g Eutrema salsugineum
TPR.G35726 Trifolium pratense
TPR.G5751 Trifolium pratense
TWI12G0140 Tripterygium wilfordii
TWI18G1297 Tripterygium wilfordii
unitig_22.g5283 Utricularia gibba
vmacro02629 Vaccinium macrocarpon
VMungo0720G1123 Vigna mungo
VMungo1383G2268 Vigna mungo

User provided reference genes

Program Settings