Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p69360 Brassica napus
A10p00100 Brassica napus
Aa31LG1G11540 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2698 Anthoceros agrestis
Actinidia01038 Actinidia chinensis
Actinidia13618 Actinidia chinensis
Actinidia31661 Actinidia chinensis
Ah.01g017970 Amaranthus hybridus
AL1G10090 Arabidopsis lyrata
Aqoxy109s003 Aquilegia oxysepala
Aqoxy3G01907 Aquilegia oxysepala
Aqoxy3G01908 Aquilegia oxysepala
Aqoxy3G01910 Aquilegia oxysepala
Aqoxy91s002 Aquilegia oxysepala
Aqoxy91s003 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.CPA9TZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RC63K2 Arachis hypogaea
AT1G02140 Arabidopsis thaliana
ATR0090G010 Amborella trichopoda
Atru.chr2.217 Acer truncatum
Atru.chr5.117 Acer truncatum
AUR62014174 Chenopodium quinoa
AUR62039531 Chenopodium quinoa
BcaB03g13634 Brassica carinata
BcaC07g42337 Brassica carinata
BcaC07g42439 Brassica carinata
BolC5t28794H Brassica oleracea
BolC8t52927H Brassica oleracea
BraA09t42281Z Brassica rapa
BraA10t42288Z Brassica rapa
C05p00070 Brassica napus
C08p54180 Brassica napus
CAN.G460.2 Capsicum annuum
CANSAT25G0195 Cannabis sativa
CARHR000190 Cardamine hirsuta
Carub.0001s0001 Capsella rubella
Ca_15636_v3 Cicer arietinum L.
CBR_g19771 Chara braunii
Cc02_g04830 Coffea canephora
CDE06G1723 Ceratophyllum demersum
CDE06G1820 Ceratophyllum demersum
CDE06G1835 Ceratophyllum demersum
Cfa009863 Carpinus fangiana
Ciclev10022690m.g Citrus clementina
CiPaw.13G025400 Carya illinoinensis
CiPaw.14G019900 Carya illinoinensis
ClCG05G000140 Citrullus lanatus
COL.COLO4_12397 Corchorus olitorius
COL.COLO4_14773 Corchorus olitorius
Cpa.g.sc22.26 Carica papaya
Cre09.g392692 Chlamydomonas reinhardtii
CsaV3_3G007250 Cucumis sativus L.
CSS0010737 Camellia sinensis var. sinensis
Dinv43609 Davidia involucrata
Dinv44054 Davidia involucrata
Duzib133G0083 Durio zibethinus
Duzib138G0704 Durio zibethinus
ECA232G0872 Erigeron canadensis
EL10Ac6g14165 Beta vulgaris
Eucgr.D01223 Eucalyptus grandis
FAN01G2506 Fragaria x ananassa
FAN03G2167 Fragaria x ananassa
FAN06G2246 Fragaria x ananassa
FAN06G3355 Fragaria x ananassa
FAN10G0507 Fragaria x ananassa
FAN10G0749 Fragaria x ananassa
FvH4_7g10360 Fragaria vesca
Glyma.03G109200 Glycine max
Glyma.07G115700 Glycine max
Glyma.15G097500 Glycine max
Gohir.A08G057900 Gossypium hirsutum
Gohir.A11G075100 Gossypium hirsutum
Gohir.D08G067200 Gossypium hirsutum
Gohir.D11G079800 Gossypium hirsutum
Gorai.004G069800 Gossypium raimondii
Gorai.007G085400 Gossypium raimondii
GSVIVG01013876001 Vitis vinifera
HanXRQChr09g0252831 Helianthus annuus
HanXRQChr15g0493591 Helianthus annuus
Haze_23235 Corylus avellana
Haze_27249 Corylus avellana
Hma1.2p1_1508F.1_g287710 Hydrangea macrophylla
HPP92_014889 Vanilla planifolia
HPP92_014893 Vanilla planifolia
HPP92_020677 Vanilla planifolia
Hund24961 Selenicereus undatus
Lalb_Chr01g0012541 Lupinus albus
Lalb_Chr06g0171081 Lupinus albus
Lj3g0003497 Lotus japonicus
Lj3g0012613 Lotus japonicus
Lj7A548G44 Lonicera japonica
Lj9A555T36 Lonicera japonica
Lsat_1_v5_gn_0_10121 Lactuca sativa
Lsat_1_v5_gn_2_127120 Lactuca sativa
Manes.05G055700 Manihot esculenta
Mapoly0032s0045 Marchantia polymorpha
MBI19_g27175_MAGBIO Magnolia biondii
MCO04G284 Micromonas commoda
MD00G1129300 Malus domestica
MD07G1109700 Malus domestica
Medtr3g109260 Medicago truncatula
Medtr3g118110 Medicago truncatula
MELO3C005946.2 Cucumis melo
Migut.F00534 Erythranthe guttata
MSTRG.27225 Avicennia marina
Nitab4.5_0002153g0060 Nicotiana tabacum
Nitab4.5_0002359g0040 Nicotiana tabacum
Nitab4.5_0003321g0070 Nicotiana tabacum
Nitab4.5_0004457g0020 Nicotiana tabacum
Nn1g00815 Nelumbo nucifera
Oeu030870.1 Olea europaea
Oeu046442.1 Olea europaea
Os08g0107900 Oryza sativa ssp. japonica
Os12g0287200 Oryza sativa ssp. japonica
Peaxi162Scf00304g01023 Petunia axillaris
Peaxi162Scf01305g00032 Petunia axillaris
PGR004G2111 Punica granatum
PGR004G2481 Punica granatum
PGSC0003DMG400021002 Solanum tuberosum
Phvul.006G161800 Phaseolus vulgaris
Phvul.010G046900 Phaseolus vulgaris
Potri.002G138500 Populus trichocarpa
Potri.014G049700 Populus trichocarpa
Pp3c1_16390 Physcomitrium patens
Pp3c1_16440 Physcomitrium patens
Pp3c2_21720 Physcomitrium patens
Prupe.2G133100 Prunus persica
Psat5g001800 Pisum sativum
PSO063G7112 Papaver somniferum
PSO782G5116 Papaver somniferum
QL04p029953 Quercus lobata
QL07p006029 Quercus lobata
RcHm_v2.0_Chr1g0348061 Rosa chinensis
Rhsim03G0159900 Rhododendron simsii
Rhsim13G0168500 Rhododendron simsii
Rhsim13G0168700 Rhododendron simsii
Sabra02G0107500 Salix brachista
SalBow3G0312 Salvia bowleyana
SalBow3G4020 Salvia bowleyana
Sc24g0004090 Simmondsia chinensis
Sed0011885 Sechium edule
SEGI_06195 Sequoiadendron giganteum
SEGI_27062 Sequoiadendron giganteum
SGA_v2.0_scaffold44G16581 Striga asiatica
SGA_v2.0_scaffold60G20835 Striga asiatica
SHI13620 Sapria himalayana
Solyc03g093680.4 Solanum lycopersicum
Sopen03g024580 Solanum pennellii
Sp1g00120 Schrenkiella parvula
TAR629G1537 Trochodendron aralioides
TAR636G2330 Trochodendron aralioides
THA.LOC104801496 Tarenaya hassleriana
THA.LOC104816996 Tarenaya hassleriana
Thecc.01G396100 Theobroma cacao
Thhalv10009013m.g Eutrema salsugineum
TPR.G38529 Trifolium pratense
TWI23G1276 Tripterygium wilfordii
TWI59G0764 Tripterygium wilfordii
unitig_37.g12485 Utricularia gibba
unitig_46.g18760 Utricularia gibba
vmacro05443 Vaccinium macrocarpon
VMungo0331G1366 Vigna mungo
VMungo0540G1169 Vigna mungo
Zm00001eb174310 Zea mays
Zm00001eb260270 Zea mays

User provided reference genes

Program Settings