Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A08p13970 Brassica napus
A09p43700 Brassica napus
Aa31LG6G1470 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis
Actinidia35595 Actinidia chinensis
Ah.02g117850 Amaranthus hybridus
Ah.09g233350 Amaranthus hybridus
Ah.14g087050 Amaranthus hybridus
AL2G35820 Arabidopsis lyrata
AL6G39660 Arabidopsis lyrata
AL7G35490 Arabidopsis lyrata
AL8G12840 Arabidopsis lyrata
Aqoxy1G02001 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea
AT4G18760 Arabidopsis thaliana
AT5G45770 Arabidopsis thaliana
ATR0012G050 Amborella trichopoda
ATR0705G001 Amborella trichopoda
Atru.chr10.1586 Acer truncatum
AUR62027707 Chenopodium quinoa
AUR62039461 Chenopodium quinoa
BcaB04g18496 Brassica carinata
BcaC01g00565 Brassica carinata
BcaC09g51473 Brassica carinata
BcaNung05916 Brassica carinata
BolC1t01251H Brassica oleracea
BolC3t20416H Brassica oleracea
BraA01t01950Z Brassica rapa
BraA07t30082Z Brassica rapa
BraA08t33388Z Brassica rapa
BraA09t39829Z Brassica rapa
C01p12740 Brassica napus
C03p81450 Brassica napus
CAN.G411.59 Capsicum annuum
CAN.G866.27 Capsicum annuum
CANSAT21G2377 Cannabis sativa
CARHR176210 Cardamine hirsuta
CARHR225610 Cardamine hirsuta
Carub.0008s0222 Capsella rubella
Ca_00456_v3 Cicer arietinum L.
Ca_17907_v3 Cicer arietinum L.
Cc02_g15470 Coffea canephora
CDE02G0812 Ceratophyllum demersum
Cfa000640 Carpinus fangiana
Cfa019730 Carpinus fangiana
Ciclev10015277m.g Citrus clementina
CiPaw.09G072000 Carya illinoinensis
ClCG01G023850 Citrullus lanatus
ClCG03G007510 Citrullus lanatus
COL.COLO4_31255 Corchorus olitorius
Cpa.g.sc7.100 Carica papaya
CsaV3_1G033160 Cucumis sativus L.
CsaV3_6G051010 Cucumis sativus L.
CSS0049237 Camellia sinensis var. sinensis
DCAR_003990 Daucus carota
DCAR_027987 Daucus carota
Dinv12762 Davidia involucrata
Dinv32348 Davidia involucrata
Duzib160G0263 Durio zibethinus
Duzib192G1038 Durio zibethinus
Duzib235G0429 Durio zibethinus
ECA236G4320 Erigeron canadensis
Eucgr.E02765 Eucalyptus grandis
FAN11G0786 Fragaria x ananassa
FAN16G2064 Fragaria x ananassa
FAN21G2979 Fragaria x ananassa
FAN25G3279 Fragaria x ananassa
FvH4_3g07430 Fragaria vesca
Glyma.05G159900 Glycine max
Glyma.13G227700 Glycine max
Glyma.15G084800 Glycine max
Gohir.A05G154000 Gossypium hirsutum
Gohir.A06G132500 Gossypium hirsutum
Gohir.A10G035400 Gossypium hirsutum
Gohir.D05G156801 Gossypium hirsutum
Gohir.D06G138100 Gossypium hirsutum
Gohir.D10G036100 Gossypium hirsutum
Gorai.010G160400 Gossypium raimondii
Gorai.011G038000 Gossypium raimondii
HanXRQChr04g0116951 Helianthus annuus
HanXRQChr09g0243731 Helianthus annuus
HanXRQChr09g0245841 Helianthus annuus
HanXRQChr10g0316731 Helianthus annuus
HanXRQChr15g0480781 Helianthus annuus
Haze_06190 Corylus avellana
HPP92_011510 Vanilla planifolia
Lalb_Chr13g0295201 Lupinus albus
Lalb_Chr15g0086241 Lupinus albus
Lalb_Chr18g0054701 Lupinus albus
Lj1A1174T75 Lonicera japonica
Lj4g0003170 Lotus japonicus
Lj6g0022713 Lotus japonicus
Lsat_1_v5_gn_1_108121 Lactuca sativa
Lsat_1_v5_gn_7_24240 Lactuca sativa
Manes.16G042000 Manihot esculenta
Manes.17G058300 Manihot esculenta
MBI07_g09546_MAGBIO Magnolia biondii
MD10G1276600 Malus domestica
MD15G1359100 Malus domestica
Medtr2g016620 Medicago truncatula
Medtr8g086590 Medicago truncatula
MELO3C002671.2 Cucumis melo
MELO3C007203.2 Cucumis melo
Migut.M01015 Erythranthe guttata
MSTRG.16163 Avicennia marina
MSTRG.7422 Avicennia marina
Nitab4.5_0000437g0190 Nicotiana tabacum
Nitab4.5_0000462g0040 Nicotiana tabacum
Nitab4.5_0002458g0090 Nicotiana tabacum
Nitab4.5_0008526g0040 Nicotiana tabacum
Nn1g04504 Nelumbo nucifera
Nn3g21120 Nelumbo nucifera
Oeu039891.1 Olea europaea
Oeu041745.1 Olea europaea
Os01g0750400 Oryza sativa ssp. japonica
Peaxi162Scf00371g00032 Petunia axillaris
Peaxi162Scf00734g00053 Petunia axillaris
PGR042G3004 Punica granatum
PGSC0003DMG400026750 Solanum tuberosum
PGSC0003DMG401028427 Solanum tuberosum
Phvul.002G240100 Phaseolus vulgaris
Phvul.006G174100 Phaseolus vulgaris
Potri.004G059500 Populus trichocarpa
Potri.011G069500 Populus trichocarpa
Pp3c14_13680 Physcomitrium patens
Prupe.4G065600 Prunus persica
Psat1g195760 Pisum sativum
Psat6g025000 Pisum sativum
Psat7g069000 Pisum sativum
PSO541G1278 Papaver somniferum
PSO675G2498 Papaver somniferum
QL05p048361 Quercus lobata
RcHm_v2.0_Chr5g0011431 Rosa chinensis
Rhsim13G0188600 Rhododendron simsii
Sabra04G0038500 Salix brachista
Sabra11G0053600 Salix brachista
Sabra11G0057200 Salix brachista
SalBow8G4302 Salvia bowleyana
Sc05g0007000 Simmondsia chinensis
Sed0000562 Sechium edule
Sed0009063 Sechium edule
Sed0018737 Sechium edule
SEGI_04477 Sequoiadendron giganteum
SEGI_20269 Sequoiadendron giganteum
SGA_v2.0_scaffold1G00068 Striga asiatica
SMO198G0035 Selaginella moellendorffii
SMO198G0069 Selaginella moellendorffii
Solyc02g072250.1 Solanum lycopersicum
Solyc03g006050.4 Solanum lycopersicum
Sopen02g021230 Solanum pennellii
Sopen03g002060 Solanum pennellii
Sp2g10680 Schrenkiella parvula
Sp7g17460 Schrenkiella parvula
TAR626G1977 Trochodendron aralioides
THA.LOC104798441 Tarenaya hassleriana
Thecc.06G167100 Theobroma cacao
Thhalv10025247m.g Eutrema salsugineum
TPR.G4517 Trifolium pratense
TPR.G6739 Trifolium pratense
TWI09G0810 Tripterygium wilfordii
unitig_8.g4592 Utricularia gibba
unitig_8.g4593 Utricularia gibba
VMungo0540G1249 Vigna mungo
VMungo1185G0001 Vigna mungo
Zm00001eb153350 Zea mays

User provided reference genes

Program Settings