Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p30340 Brassica napus
A08p24530 Brassica napus
A09p02870 Brassica napus
A09p36150 Brassica napus
Aa31LG6G5440 Aethionema arabicum
Aa31LG9G8880 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1912 Anthoceros agrestis
Actinidia09937 Actinidia chinensis
Actinidia13441 Actinidia chinensis
Actinidia27540 Actinidia chinensis
Ah.14g086280 Amaranthus hybridus
AL1G44250 Arabidopsis lyrata
AL6G49170 Arabidopsis lyrata
Aqoxy1G01658 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4B2CWV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GW4I6G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PSQD3A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R7LP1S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WT34VK Arachis hypogaea
AT1G30300 Arabidopsis thaliana
AT4G03610 Arabidopsis thaliana
ATR1098G096 Amborella trichopoda
Atru.chr10.1082 Acer truncatum
Atru.chr10.1083 Acer truncatum
AUR62002680 Chenopodium quinoa
AUR62030135 Chenopodium quinoa
BcaB01g01908 Brassica carinata
BcaB01g02544 Brassica carinata
BcaB03g12208 Brassica carinata
BcaB07g32640 Brassica carinata
BcaC01g00182 Brassica carinata
BcaC01g06666 Brassica carinata
BcaC04g19477 Brassica carinata
BcaC04g23959 Brassica carinata
BcaC05g27062 Brassica carinata
BolC3t15977H Brassica oleracea
BolC3t19922H Brassica oleracea
BolC5t31653H Brassica oleracea
BolC9t53222H Brassica oleracea
BraA03t12216Z Brassica rapa
BraA08t34409Z Brassica rapa
BraA09t35932Z Brassica rapa
BraA09t39142Z Brassica rapa
C03p36630 Brassica napus
C03p76660 Brassica napus
C05p29210 Brassica napus
C09p02950 Brassica napus
CAN.G103.15 Capsicum annuum
CANSAT35G0337 Cannabis sativa
CARHR029690 Cardamine hirsuta
CARHR252020 Cardamine hirsuta
Carub.0001s2853 Capsella rubella
Carub.0006s3345 Capsella rubella
Ca_00510_v3 Cicer arietinum L.
CBR_g16093 Chara braunii
CBR_g26343 Chara braunii
Cc00_g02010 Coffea canephora
CDE05G1148 Ceratophyllum demersum
CDE11G0434 Ceratophyllum demersum
Cfa000899 Carpinus fangiana
Ciclev10015916m.g Citrus clementina
CiPaw.09G119700 Carya illinoinensis
ClCG03G006500 Citrullus lanatus
COL.COLO4_31010 Corchorus olitorius
Cpa.g.sc17.50 Carica papaya
CsaV3_1G036870 Cucumis sativus L.
CSS0050225 Camellia sinensis var. sinensis
DCAR_027888 Daucus carota
Dinv21519 Davidia involucrata
Dinv32214 Davidia involucrata
Duzib192G0694 Durio zibethinus
Duzib235G1243 Durio zibethinus
ECA234G0538 Erigeron canadensis
EL10Ac8g19627 Beta vulgaris
EL10As2g23264 Beta vulgaris
Eucgr.D00270 Eucalyptus grandis
FAN11G0257 Fragaria x ananassa
FAN16G1117 Fragaria x ananassa
FAN21G0057 Fragaria x ananassa
FAN25G1086 Fragaria x ananassa
FvH4_3g05040 Fragaria vesca
Glyma.05G143300 Glycine max
Glyma.08G099700 Glycine max
Glyma.08G231600 Glycine max
Glyma.13G221800 Glycine max
Glyma.15G090400 Glycine max
Gohir.A06G139900 Gossypium hirsutum
Gohir.A06G196100 Gossypium hirsutum
Gohir.D06G144600 Gossypium hirsutum
Gohir.D06G203600 Gossypium hirsutum
Gohir.D11G230780 Gossypium hirsutum
Gorai.007G245400 Gossypium raimondii
Gorai.010G168300 Gossypium raimondii
Gorai.010G237500 Gossypium raimondii
GSVIVG01021548001 Vitis vinifera
HanXRQChr17g0564031 Helianthus annuus
Haze_05676 Corylus avellana
Hma1.2p1_0318F.1_g123750 Hydrangea macrophylla
HPP92_018655 Vanilla planifolia
HPP92_018659 Vanilla planifolia
Hund17750 Selenicereus undatus
Lalb_Chr15g0086621 Lupinus albus
Lj1C1169G11 Lonicera japonica
Lj4g0000856 Lotus japonicus
Lj6g0014068 Lotus japonicus
Lsat_1_v5_gn_4_29840 Lactuca sativa
Manes.01G173000 Manihot esculenta
Manes.01G173100 Manihot esculenta
Manes.17G074200 Manihot esculenta
Mapoly0054s0026 Marchantia polymorpha
MBI18_g11219_MAGBIO Magnolia biondii
MD05G1279500 Malus domestica
MD10G1258200 Malus domestica
Medtr2g018660 Medicago truncatula
MELO3C002770.2 Cucumis melo
Migut.K01167 Erythranthe guttata
Migut.M00880 Erythranthe guttata
MSTRG.7513 Avicennia marina
Nitab4.5_0000315g0040 Nicotiana tabacum
Nitab4.5_0002071g0030 Nicotiana tabacum
Nn3g20332 Nelumbo nucifera
Oeu015213.1 Olea europaea
Os03g0642900 Oryza sativa ssp. japonica
Os03g0643250 Oryza sativa ssp. japonica
Os12g0615500 Oryza sativa ssp. japonica
Peaxi162Scf00045g02427 Petunia axillaris
PGR083G2813 Punica granatum
PGSC0003DMG400002293 Solanum tuberosum
Phvul.002G178000 Phaseolus vulgaris
Phvul.006G168145 Phaseolus vulgaris
Potri.011G081600 Populus trichocarpa
Pp3c3_9110 Physcomitrium patens
PRCOL_00004844 Prasinoderma coloniale
Prupe.4G085600 Prunus persica
Psat1g192120 Pisum sativum
PSO541G1418 Papaver somniferum
QL05p055095 Quercus lobata
RcHm_v2.0_Chr5g0014931 Rosa chinensis
Rhsim09G0051000 Rhododendron simsii
Rhsim13G0117500 Rhododendron simsii
Rhsim13G0117600 Rhododendron simsii
Sabra11G0065700 Salix brachista
Sc05g0005980 Simmondsia chinensis
Sed0018506 Sechium edule
Sed0018770 Sechium edule
SEGI_24320 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32940 Striga asiatica
SHI10512 Sapria himalayana
SHI10514 Sapria himalayana
SMO118G0510 Selaginella moellendorffii
Solyc08g023500.4 Solanum lycopersicum
Sopen08g008680 Solanum pennellii
Sp1g26160 Schrenkiella parvula
Sp6g03600 Schrenkiella parvula
TAR627G0288 Trochodendron aralioides
THA.LOC104812309 Tarenaya hassleriana
Thecc.06G144400 Theobroma cacao
Thhalv10008197m.g Eutrema salsugineum
Thhalv10028809m.g Eutrema salsugineum
TPR.G26265 Trifolium pratense
TWI09G0418 Tripterygium wilfordii
TWI73G0911 Tripterygium wilfordii
unitig_37.g12087 Utricularia gibba
vmacro03432 Vaccinium macrocarpon
VMungo0251G0380 Vigna mungo
VMungo0251G1393 Vigna mungo
VMungo0540G1690 Vigna mungo
Zm00001eb031800 Zea mays
Zm00001eb050530 Zea mays
Zm00001eb083760 Zea mays

User provided reference genes

Program Settings