Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p16840 Brassica napus
A07p30970 Brassica napus
A07p37140 Brassica napus
Aa31LG4G10250 Aethionema arabicum
AL2G30180 Arabidopsis lyrata
Aqoxy3G00032 Aquilegia oxysepala
AT1G70740 Arabidopsis thaliana
ATR0564G101 Amborella trichopoda
Atru.chr11.636 Acer truncatum
Atru.chr11.637 Acer truncatum
AUR62014173 Chenopodium quinoa
AUR62039532 Chenopodium quinoa
BcaB03g14841 Brassica carinata
BcaB03g15556 Brassica carinata
BcaB05g24609 Brassica carinata
BcaB07g33950 Brassica carinata
BcaC03g15227 Brassica carinata
BcaC08g45804 Brassica carinata
BcaC08g46515 Brassica carinata
BolC2t08854H Brassica oleracea
BolC6t38717H Brassica oleracea
BolC6t39540H Brassica oleracea
BraA02t06738Z Brassica rapa
BraA07t30733Z Brassica rapa
BraA07t31276Z Brassica rapa
C02p28100 Brassica napus
C06p35970 Brassica napus
C06p44810 Brassica napus
CAN.G1020.5 Capsicum annuum
CANSAT01G0124 Cannabis sativa
CARHR064000 Cardamine hirsuta
Carub.0002s1748 Capsella rubella
Ca_11589_v3 Cicer arietinum L.
Ca_12580_v3 Cicer arietinum L.
Ca_18179_v3 Cicer arietinum L.
Cc11_g08220 Coffea canephora
Cfa014985 Carpinus fangiana
Ciclev10015463m.g Citrus clementina
CiPaw.05G193500 Carya illinoinensis
CiPaw.06G048900 Carya illinoinensis
ClCG07G005960 Citrullus lanatus
COL.COLO4_02814 Corchorus olitorius
COL.COLO4_02815 Corchorus olitorius
Cpa.g.sc2.233 Carica papaya
CsaV3_5G014710 Cucumis sativus L.
CSS0027223 Camellia sinensis var. sinensis
CSS0035357 Camellia sinensis var. sinensis
CSS0039100 Camellia sinensis var. sinensis
DCAR_007315 Daucus carota
DCAR_026790 Daucus carota
DCAR_030243 Daucus carota
Dinv02664 Davidia involucrata
Dinv18619 Davidia involucrata
Dinv26235 Davidia involucrata
Dinv28050 Davidia involucrata
Duzib248G1614 Durio zibethinus
Duzib251G0629 Durio zibethinus
Duzib268G1340 Durio zibethinus
ECA233G3563 Erigeron canadensis
ECA234G4075 Erigeron canadensis
ECA236G0233 Erigeron canadensis
EL10Ac6g14166 Beta vulgaris
Eucgr.G02158 Eucalyptus grandis
FAN07G0350 Fragaria x ananassa
FAN17G1876 Fragaria x ananassa
FAN22G1050 Fragaria x ananassa
FvH4_4g34050 Fragaria vesca
Glyma.05G139500 Glycine max
Glyma.07G166700 Glycine max
Glyma.08G094800 Glycine max
Glyma.09G121700 Glycine max
Gohir.A01G145600 Gossypium hirsutum
Gohir.A05G309200 Gossypium hirsutum
Gohir.D01G143000 Gossypium hirsutum
Gohir.D05G310000 Gossypium hirsutum
Gorai.002G176300 Gossypium raimondii
Gorai.009G330600 Gossypium raimondii
GSVIVG01011702001 Vitis vinifera
HanXRQChr08g0212351 Helianthus annuus
HanXRQChr12g0363501 Helianthus annuus
HanXRQChr16g0529871 Helianthus annuus
HanXRQChr17g0567361 Helianthus annuus
Haze_10938 Corylus avellana
Hma1.2p1_0330F.1_g127470 Hydrangea macrophylla
Hma1.2p1_0346F.1_g131580 Hydrangea macrophylla
Hma1.2p1_3350F.1_g335495 Hydrangea macrophylla
HPP92_009191 Vanilla planifolia
Hund24962 Selenicereus undatus
Lalb_Chr07g0187761 Lupinus albus
Lalb_Chr12g0206751 Lupinus albus
Lj2g0020552 Lotus japonicus
Lj3C866T12 Lonicera japonica
Lj4g0022956 Lotus japonicus
Lsat_1_v5_gn_3_55680 Lactuca sativa
Lsat_1_v5_gn_4_13581 Lactuca sativa
Lsat_1_v5_gn_8_44380 Lactuca sativa
Manes.15G131600 Manihot esculenta
Manes.17G080800 Manihot esculenta
MBI12_g41592_MAGBIO Magnolia biondii
MBI12_g45039_MAGBIO Magnolia biondii
MBI12_g46444_MAGBIO Magnolia biondii
MBI19_g25541_MAGBIO Magnolia biondii
MD13G1021200 Malus domestica
MD16G1022500 Malus domestica
Medtr1g031780 Medicago truncatula
MELO3C026424.2 Cucumis melo
Migut.E00450 Erythranthe guttata
Migut.L00403 Erythranthe guttata
MSTRG.13608 Avicennia marina
Nitab4.5_0000916g0130 Nicotiana tabacum
Nitab4.5_0013639g0010 Nicotiana tabacum
Nn3g18298 Nelumbo nucifera
Nn4g24261 Nelumbo nucifera
Oeu007174.1 Olea europaea
Oeu027023.1 Olea europaea
Oeu063589.1 Olea europaea
Os09g0408900 Oryza sativa ssp. japonica
Peaxi162Scf00723g00428 Petunia axillaris
PGR142G0827 Punica granatum
PGSC0003DMG400029520 Solanum tuberosum
Phvul.002G182900 Phaseolus vulgaris
Phvul.003G021700 Phaseolus vulgaris
Potri.008G132300 Populus trichocarpa
Potri.010G109700 Populus trichocarpa
Prupe.1G330500 Prunus persica
Psat5g174920 Pisum sativum
Psat6g044280 Pisum sativum
Psat7g083120 Pisum sativum
PSO017G5903 Papaver somniferum
PSO478G0428 Papaver somniferum
QL03p034003 Quercus lobata
RcHm_v2.0_Chr4g0443541 Rosa chinensis
Rhsim09G0064300 Rhododendron simsii
Rhsim09G0175600 Rhododendron simsii
Sabra08G0100900 Salix brachista
Sabra10G0080200 Salix brachista
SalBow2G3556 Salvia bowleyana
SalBow8G3754 Salvia bowleyana
Sc04g0005280 Simmondsia chinensis
Sed0013185 Sechium edule
Sed0021916 Sechium edule
SEGI_04825 Sequoiadendron giganteum
SEGI_07833 Sequoiadendron giganteum
SEGI_08792 Sequoiadendron giganteum
SEGI_09047 Sequoiadendron giganteum
SEGI_10282 Sequoiadendron giganteum
SEGI_12952 Sequoiadendron giganteum
SEGI_18674 Sequoiadendron giganteum
SEGI_20108 Sequoiadendron giganteum
SEGI_25635 Sequoiadendron giganteum
SEGI_35136 Sequoiadendron giganteum
SEGI_37157 Sequoiadendron giganteum
SEGI_39527 Sequoiadendron giganteum
SEGI_40557 Sequoiadendron giganteum
SGA_v2.0_scaffold139G35355 Striga asiatica
Solyc04g007880.4 Solanum lycopersicum
Sopen04g003020 Solanum pennellii
Sp5g25920 Schrenkiella parvula
TAR374G0870 Trochodendron aralioides
TAR622G0340 Trochodendron aralioides
TAR629G1299 Trochodendron aralioides
THA.LOC104809122 Tarenaya hassleriana
THA.LOC104822998 Tarenaya hassleriana
Thecc.02G288000 Theobroma cacao
Thhalv10018598m.g Eutrema salsugineum
TPR.G36885 Trifolium pratense
TPR.G5061 Trifolium pratense
TWI53G2004 Tripterygium wilfordii
TWI74G1048 Tripterygium wilfordii
TWI77G0465 Tripterygium wilfordii
vmacro00399 Vaccinium macrocarpon
vmacro10671 Vaccinium macrocarpon
VMungo0251G0277 Vigna mungo
VMungo1215G2508 Vigna mungo
Zm00001eb099320 Zea mays
Zm00001eb312330 Zea mays

User provided reference genes

Program Settings