Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p06410 Brassica napus
A03p10190 Brassica napus
A10p19370 Brassica napus
Aa31LG1G14040 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.672 Anthoceros agrestis
Actinidia39652 Actinidia chinensis
AL6G32200 Arabidopsis lyrata
Aqoxy7G04097 Aquilegia oxysepala
AT5G20650 Arabidopsis thaliana
ATR0598G332 Amborella trichopoda
Atru.chr7.1719 Acer truncatum
Atru.chr7.1831 Acer truncatum
AUR62025257 Chenopodium quinoa
AUR62028262 Chenopodium quinoa
BcaB05g22823 Brassica carinata
BcaB05g22824 Brassica carinata
BcaB08g36516 Brassica carinata
BcaC03g13784 Brassica carinata
BcaC04g19455 Brassica carinata
BolC3t13642H Brassica oleracea
BolC9t58421H Brassica oleracea
BraA02t05586Z Brassica rapa
BraA03t10329Z Brassica rapa
BraA10t44014Z Brassica rapa
C03p11710 Brassica napus
C09p55580 Brassica napus
CAN.G65.51 Capsicum annuum
CANSAT25G0735 Cannabis sativa
CANSAT56G3391 Cannabis sativa
CARHR192160 Cardamine hirsuta
Carub.0006s1899 Capsella rubella
Ca_13094_v3 Cicer arietinum L.
Ca_15825_v3 Cicer arietinum L.
Ca_28263_v3 Cicer arietinum L.
CBR_g10988 Chara braunii
Cc08_g01000 Coffea canephora
Cfa002978 Carpinus fangiana
Cfa015757 Carpinus fangiana
Ciclev10009830m.g Citrus clementina
CiPaw.03G205100 Carya illinoinensis
CiPaw.05G156700 Carya illinoinensis
CiPaw.05G157200 Carya illinoinensis
CiPaw.15G090800 Carya illinoinensis
CiPaw.16G067200 Carya illinoinensis
ClCG08G009750 Citrullus lanatus
COL.COLO4_18085 Corchorus olitorius
COL.COLO4_21157 Corchorus olitorius
CsaV3_6G031870 Cucumis sativus L.
CSS0013785 Camellia sinensis var. sinensis
DCAR_001242 Daucus carota
Dinv42402 Davidia involucrata
Duzib150G0920 Durio zibethinus
Duzib150G1216 Durio zibethinus
Duzib187G0159 Durio zibethinus
Duzib187G1941 Durio zibethinus
ECA236G3206 Erigeron canadensis
EL10Ac8g19048 Beta vulgaris
Eucgr.B00068 Eucalyptus grandis
Eucgr.C03322 Eucalyptus grandis
Eucgr.J01772 Eucalyptus grandis
Eucgr.K01930 Eucalyptus grandis
Eucgr.L03350 Eucalyptus grandis
FAN15G2682 Fragaria x ananassa
FAN20G3158 Fragaria x ananassa
FAN24G1040 Fragaria x ananassa
FAN27G1345 Fragaria x ananassa
FvH4_2g30830 Fragaria vesca
Glyma.04G057000 Glycine max
Glyma.06G057400 Glycine max
Glyma.14G107100 Glycine max
Glyma.17G219400 Glycine max
Gohir.A06G077200 Gossypium hirsutum
Gohir.A07G018900 Gossypium hirsutum
Gohir.A13G188100 Gossypium hirsutum
Gohir.A13G190100 Gossypium hirsutum
Gohir.D06G076200 Gossypium hirsutum
Gohir.D07G018700 Gossypium hirsutum
Gohir.D13G195000 Gossypium hirsutum
Gohir.D13G196345 Gossypium hirsutum
Gorai.001G019400 Gossypium raimondii
Gorai.010G089200 Gossypium raimondii
Gorai.013G221100 Gossypium raimondii
Gorai.013G223700 Gossypium raimondii
GSVIVG01015065001 Vitis vinifera
HanXRQChr03g0067151 Helianthus annuus
HanXRQChr05g0136461 Helianthus annuus
HanXRQChr06g0171901 Helianthus annuus
HanXRQChr13g0407981 Helianthus annuus
Haze_18322 Corylus avellana
Hma1.2p1_0179F.1_g079470 Hydrangea macrophylla
Hma1.2p1_0278F.1_g111800 Hydrangea macrophylla
HPP92_016210 Vanilla planifolia
HPP92_016237 Vanilla planifolia
Lalb_Chr23g0268031 Lupinus albus
Lj1g0025356 Lotus japonicus
Lj5g0010758 Lotus japonicus
Lj7P209T18 Lonicera japonica
Lsat_1_v5_gn_7_58180 Lactuca sativa
Lsat_1_v5_gn_8_70441 Lactuca sativa
Manes.03G041100 Manihot esculenta
Manes.16G086700 Manihot esculenta
Mapoly0011s0109 Marchantia polymorpha
Mapoly0013s0019 Marchantia polymorpha
MBI19_g09927_MAGBIO Magnolia biondii
MCO15G252 Micromonas commoda
MD08G1044900 Malus domestica
MD08G1045600 Malus domestica
MD15G1048000 Malus domestica
Medtr1g015000 Medicago truncatula
Medtr3g105330 Medicago truncatula
MELO3C011494.2 Cucumis melo
Migut.A00060 Erythranthe guttata
MSTRG.14089 Avicennia marina
MSTRG.1711 Avicennia marina
MSTRG.25994 Avicennia marina
Nitab4.5_0003159g0080 Nicotiana tabacum
Nitab4.5_0009849g0010 Nicotiana tabacum
Nn2g15194 Nelumbo nucifera
Nn8g38616 Nelumbo nucifera
Oeu018026.1 Olea europaea
Oeu024207.1 Olea europaea
Os08g0455900 Oryza sativa ssp. japonica
Os09g0440700 Oryza sativa ssp. japonica
Peaxi162Scf00486g00012 Petunia axillaris
PGR044G2188 Punica granatum
PGR142G3331 Punica granatum
PGSC0003DMG400013653 Solanum tuberosum
Phvul.009G083400 Phaseolus vulgaris
Potri.006G140700 Populus trichocarpa
Potri.006G219200 Populus trichocarpa
Pp3c27_4780 Physcomitrium patens
Pp3c7_1360 Physcomitrium patens
Prupe.1G402400 Prunus persica
Psat5g033920 Pisum sativum
Psat6g023040 Pisum sativum
PSO104G0019 Papaver somniferum
PSO135G0474 Papaver somniferum
PSO421G0342 Papaver somniferum
PSO724G1087 Papaver somniferum
QL11p001038 Quercus lobata
RcHm_v2.0_Chr6g0312031 Rosa chinensis
Rhsim05G0006800 Rhododendron simsii
RhsimUnG0073900 Rhododendron simsii
Sabra06G0031400 Salix brachista
Sabra06G0110000 Salix brachista
Sabra06G0169100 Salix brachista
SalBow4G1627 Salvia bowleyana
Sc06g0000100 Simmondsia chinensis
Sed0008240 Sechium edule
SEGI_26542 Sequoiadendron giganteum
SEGI_35471 Sequoiadendron giganteum
SGA_v2.0_scaffold169G38715 Striga asiatica
SGA_v2.0_scaffold64G21904 Striga asiatica
SHI27998 Sapria himalayana
SMO001G0023 Selaginella moellendorffii
SMO146G0094 Selaginella moellendorffii
SMO146G0303 Selaginella moellendorffii
SMO173G0008 Selaginella moellendorffii
SMO174G0135 Selaginella moellendorffii
SMO307G0071 Selaginella moellendorffii
Solyc02g082080.1 Solanum lycopersicum
Sopen02g026730 Solanum pennellii
Sp6g23830 Schrenkiella parvula
TAR624G1083 Trochodendron aralioides
TAR667G0002 Trochodendron aralioides
THA.LOC104810995 Tarenaya hassleriana
Thecc.09G065300 Theobroma cacao
Thecc.09G075400 Theobroma cacao
Thhalv10015467m.g Eutrema salsugineum
TPR.G3570 Trifolium pratense
TPR.G38913 Trifolium pratense
TWI32G1339 Tripterygium wilfordii
TWI34G1946 Tripterygium wilfordii
TWI63G0819 Tripterygium wilfordii
unitig_32.g11516 Utricularia gibba
vmacro04769 Vaccinium macrocarpon
vmacro17132 Vaccinium macrocarpon
VMungo1309G0846 Vigna mungo
VMungo1309G2154 Vigna mungo
Zm00001eb068890 Zea mays
Zm00001eb073080 Zea mays
Zm00001eb100190 Zea mays
Zm00001eb314090 Zea mays
Zm00001eb327100 Zea mays

User provided reference genes

Program Settings