Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p05290 Brassica napus
A09p47510 Brassica napus
Aa31sc64G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1348 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_340.270 Anthoceros agrestis
Actinidia00148 Actinidia chinensis
Actinidia11738 Actinidia chinensis
Ah.02g119750 Amaranthus hybridus
Ah.12g056530 Amaranthus hybridus
AL396U10010 Arabidopsis lyrata
AL3G37330 Arabidopsis lyrata
AL3G43140 Arabidopsis lyrata
AL5G35610 Arabidopsis lyrata
AL5G35620 Arabidopsis lyrata
Aqoxy1G03333 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.00G2U6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3GP07U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5EKU9C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H8I0GA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J4K9CJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TJ4XJK Arachis hypogaea
AT3G54540 Arabidopsis thaliana
ATR0665G202 Amborella trichopoda
ATR0824G244 Amborella trichopoda
Atru.chr1.3219 Acer truncatum
Atru.chr11.46 Acer truncatum
AUR62005971 Chenopodium quinoa
AUR62011609 Chenopodium quinoa
AUR62016426 Chenopodium quinoa
AUR62028099 Chenopodium quinoa
BcaB01g00181 Brassica carinata
BcaB02g08446 Brassica carinata
BcaC02g09061 Brassica carinata
BcaC07g39811 Brassica carinata
BcaNung02026 Brassica carinata
BcaNung02030 Brassica carinata
BolC4t25372H Brassica oleracea
BolC8t50581H Brassica oleracea
BraA04t16232Z Brassica rapa
BraA09t40208Z Brassica rapa
C04p37980 Brassica napus
C08p29720 Brassica napus
CAN.G541.40 Capsicum annuum
CAN.G628.13 Capsicum annuum
CANSAT56G2029 Cannabis sativa
CARHR009840 Cardamine hirsuta
CARHR164450 Cardamine hirsuta
CARHR179800 Cardamine hirsuta
Carub.0005s2116 Capsella rubella
Carub.0006s3252 Capsella rubella
Ca_07071_v3 Cicer arietinum L.
CBR_g42041 Chara braunii
Cc07_g06650 Coffea canephora
CDE02G0208 Ceratophyllum demersum
CDE06G2343 Ceratophyllum demersum
Cfa000462 Carpinus fangiana
Cfa000465 Carpinus fangiana
Ciclev10025010m.g Citrus clementina
CiPaw.11G000800 Carya illinoinensis
ClCG04G005070 Citrullus lanatus
ClCG06G001150 Citrullus lanatus
COL.COLO4_10268 Corchorus olitorius
Cpa.g.sc103.76 Carica papaya
Cre01.g034950 Chlamydomonas reinhardtii
CsaV3_2G035850 Cucumis sativus L.
CsaV3_4G029060 Cucumis sativus L.
CSS0043828 Camellia sinensis var. sinensis
DCAR_021320 Daucus carota
Dinv12813 Davidia involucrata
Dinv25483 Davidia involucrata
Duzib150G0498 Durio zibethinus
Duzib168G2011 Durio zibethinus
ECA232G3747 Erigeron canadensis
ECA233G0834 Erigeron canadensis
ECA233G4280 Erigeron canadensis
ECA233G4463 Erigeron canadensis
ECA233G5022 Erigeron canadensis
EL10Ac5g10535 Beta vulgaris
Eucgr.J00857 Eucalyptus grandis
FAN02G1366 Fragaria x ananassa
FAN05G0123 Fragaria x ananassa
FAN05G3783 Fragaria x ananassa
FAN06G1871 Fragaria x ananassa
FAN09G2067 Fragaria x ananassa
FAN14G4608 Fragaria x ananassa
FAN20G0730 Fragaria x ananassa
FAN25G1281 Fragaria x ananassa
FAN27G1163 Fragaria x ananassa
FvH4_2g35540 Fragaria vesca
FvH4_6g37180 Fragaria vesca
Glyma.13G158600 Glycine max
Glyma.17G112700 Glycine max
Gohir.A07G119300 Gossypium hirsutum
Gohir.A09G110551 Gossypium hirsutum
Gohir.D07G123500 Gossypium hirsutum
Gohir.D09G107040 Gossypium hirsutum
Gorai.001G133500 Gossypium raimondii
Gorai.006G124600 Gossypium raimondii
GSVIVG01001694001 Vitis vinifera
GSVIVG01034906001 Vitis vinifera
HanXRQChr08g0214551 Helianthus annuus
HanXRQChr08g0225471 Helianthus annuus
Haze_06454 Corylus avellana
Haze_06455 Corylus avellana
Hma1.2p1_0660F.1_g197670 Hydrangea macrophylla
HPP92_016893 Vanilla planifolia
HPP92_016895 Vanilla planifolia
Lalb_Chr18g0061111 Lupinus albus
Lj3g0001657 Lotus japonicus
Lj3g0001760 Lotus japonicus
Lj5C63T16 Lonicera japonica
Lj6g0016763 Lotus japonicus
LjContig00201_ERROPOS200000g0027847 Lotus japonicus
Lsat_1_v5_gn_0_441 Lactuca sativa
Lsat_1_v5_gn_3_33421 Lactuca sativa
Lsat_1_v5_gn_7_114741 Lactuca sativa
Manes.04G121000 Manihot esculenta
Manes.11G051400 Manihot esculenta
Mapoly0122s0045 Marchantia polymorpha
MBI19_g09305_MAGBIO Magnolia biondii
MCO03G023 Micromonas commoda
MD00G1070400 Malus domestica
MD05G1058200 Malus domestica
MD05G1058300 Malus domestica
MD17G1277800 Malus domestica
Medtr1g066620 Medicago truncatula
Medtr7g018380 Medicago truncatula
Medtr8g075040 Medicago truncatula
MELO3C024756.2 Cucumis melo
Migut.L00191 Erythranthe guttata
MSTRG.3455 Avicennia marina
Nitab4.5_0000164g0210 Nicotiana tabacum
Nitab4.5_0000617g0230 Nicotiana tabacum
Nitab4.5_0012588g0010 Nicotiana tabacum
Nn1g01896 Nelumbo nucifera
Nn4g26615 Nelumbo nucifera
Oeu052098.1 Olea europaea
Os03g0441500 Oryza sativa ssp. japonica
Os04g0658400 Oryza sativa ssp. japonica
Peaxi162Scf01038g00013 Petunia axillaris
PGR004G2448 Punica granatum
PGSC0003DMG400019392 Solanum tuberosum
PGSC0003DMG400022987 Solanum tuberosum
Phvul.006G220700 Phaseolus vulgaris
Potri.008G003300 Populus trichocarpa
Potri.010G254400 Populus trichocarpa
Pp3c1_13030 Physcomitrium patens
Pp3c2_24670 Physcomitrium patens
PRCOL_00001734 Prasinoderma coloniale
Prupe.1G200300 Prunus persica
Psat3g190440 Pisum sativum
Psat4g094360 Pisum sativum
PSO170G2892 Papaver somniferum
PSO170G5940 Papaver somniferum
PSO302G0112 Papaver somniferum
PSO384G4224 Papaver somniferum
PSO782G5048 Papaver somniferum
QL04p038254 Quercus lobata
QL04p038483 Quercus lobata
QL06p040389 Quercus lobata
QL06p040433 Quercus lobata
RcHm_v2.0_Chr2g0149831 Rosa chinensis
RcHm_v2.0_Chr6g0306241 Rosa chinensis
Rhsim11G0117700 Rhododendron simsii
Sabra10G0197800 Salix brachista
SalBow4G1633 Salvia bowleyana
Sc12g0009030 Simmondsia chinensis
Sc12g0009140 Simmondsia chinensis
Sed0003208 Sechium edule
Sed0014486 Sechium edule
SEGI_23091 Sequoiadendron giganteum
SGA_v2.0_scaffold144G35994 Striga asiatica
SHI21176 Sapria himalayana
SMO171G0073 Selaginella moellendorffii
Solyc07g008610.3 Solanum lycopersicum
Solyc10g012190.3 Solanum lycopersicum
Sopen07g004550 Solanum pennellii
Sopen10g005950 Solanum pennellii
Sp5g07890 Schrenkiella parvula
TAR626G1049 Trochodendron aralioides
TAR626G1629 Trochodendron aralioides
TAR628G1397 Trochodendron aralioides
THA.LOC104799268 Tarenaya hassleriana
Thecc.09G247600 Theobroma cacao
Thhalv10000736m.g Eutrema salsugineum
Thhalv10010156m.g Eutrema salsugineum
Thhalv10011003m.g Eutrema salsugineum
TPR.G2271 Trifolium pratense
TPR.G4545 Trifolium pratense
TWI15G0954 Tripterygium wilfordii
unitig_32.g10772 Utricularia gibba
vmacro01678 Vaccinium macrocarpon
vmacro08459 Vaccinium macrocarpon
VMungo0540G2156 Vigna mungo
Zm00001eb116920 Zea mays
Zm00001eb301430 Zea mays

User provided reference genes

Program Settings