Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p20700 Brassica napus
A09p13640 Brassica napus
Aa31LG2G750 Aethionema arabicum
Actinidia02017 Actinidia chinensis
Actinidia14551 Actinidia chinensis
Ah.02g116520 Amaranthus hybridus
Ah.12g057200 Amaranthus hybridus
AL2G11800 Arabidopsis lyrata
AL7G48250 Arabidopsis lyrata
Aqoxy5G04001 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1V1HM6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3R34Z6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BJVD1V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I232SR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LSX38T Arachis hypogaea
AT1G63430 Arabidopsis thaliana
AT5G41180 Arabidopsis thaliana
ATR1126G019 Amborella trichopoda
ATR1126G072 Amborella trichopoda
Atru.chr9.2219 Acer truncatum
AUR62010613 Chenopodium quinoa
AUR62017258 Chenopodium quinoa
AUR62017261 Chenopodium quinoa
BcaB02g07905 Brassica carinata
BcaB03g16881 Brassica carinata
BcaB04g17139 Brassica carinata
BcaC02g10393 Brassica carinata
BcaC06g31944 Brassica carinata
BcaC08g44512 Brassica carinata
BolC4t24477H Brassica oleracea
BolC6t37156H Brassica oleracea
BolC9t54541H Brassica oleracea
BraA07t29761Z Brassica rapa
BraA09t37017Z Brassica rapa
C04p29430 Brassica napus
C06p19640 Brassica napus
C09p16300 Brassica napus
CAN.G1548.1 Capsicum annuum
CAN.G26.11 Capsicum annuum
CANSAT21G0025 Cannabis sativa
CARHR047920 Cardamine hirsuta
CARHR213200 Cardamine hirsuta
Carub.0002s0145 Capsella rubella
Carub.0007s3430 Capsella rubella
Ca_17545_v3 Cicer arietinum L.
Ca_24559_v3 Cicer arietinum L.
Cc08_g14480 Coffea canephora
CDE04G2733 Ceratophyllum demersum
CDE06G0330 Ceratophyllum demersum
Cfa012155 Carpinus fangiana
Ciclev10019211m.g Citrus clementina
CiPaw.11G137500 Carya illinoinensis
CiPaw.12G094700 Carya illinoinensis
ClCG01G002870 Citrullus lanatus
ClCG07G008030 Citrullus lanatus
COL.COLO4_34437 Corchorus olitorius
Cpa.g.sc202.8 Carica papaya
CsaV3_4G006010 Cucumis sativus L.
CsaV3_5G002960 Cucumis sativus L.
CSS0001390 Camellia sinensis var. sinensis
CSS0003082 Camellia sinensis var. sinensis
CSS0034934 Camellia sinensis var. sinensis
CSS0035741 Camellia sinensis var. sinensis
DCAR_000602 Daucus carota
DCAR_008405 Daucus carota
Dinv37659 Davidia involucrata
Dinv38956 Davidia involucrata
Duzib084G0230 Durio zibethinus
Duzib205G1385 Durio zibethinus
ECA233G4867 Erigeron canadensis
ECA240G1996 Erigeron canadensis
ECA246G1783 Erigeron canadensis
EL10Ac5g12780 Beta vulgaris
Eucgr.D01865 Eucalyptus grandis
FAN04G1116 Fragaria x ananassa
FAN08G2026 Fragaria x ananassa
FAN13G0187 Fragaria x ananassa
FAN18G4383 Fragaria x ananassa
FvH4_5g02060 Fragaria vesca
Glyma.01G218800 Glycine max
Glyma.05G206300 Glycine max
Glyma.08G013200 Glycine max
Glyma.11G024700 Glycine max
Glyma.12G167901 Glycine max
Gohir.A03G015700 Gossypium hirsutum
Gohir.A08G180700 Gossypium hirsutum
Gohir.A09G192800 Gossypium hirsutum
Gohir.D03G152200 Gossypium hirsutum
Gohir.D08G199400 Gossypium hirsutum
Gohir.D09G187000 Gossypium hirsutum
Gorai.003G159600 Gossypium raimondii
Gorai.004G210200 Gossypium raimondii
Gorai.006G209800 Gossypium raimondii
GSVIVG01019778001 Vitis vinifera
HanXRQChr06g0165661 Helianthus annuus
HanXRQChr07g0187851 Helianthus annuus
HanXRQChr12g0384511 Helianthus annuus
HanXRQChr13g0416191 Helianthus annuus
Haze_08873 Corylus avellana
Hma1.2p1_0377F.1_g139250 Hydrangea macrophylla
Hma1.2p1_1922F.1_g307590 Hydrangea macrophylla
HPP92_001498 Vanilla planifolia
HPP92_026756 Vanilla planifolia
Hund11486 Selenicereus undatus
Hund14750 Selenicereus undatus
Lalb_Chr05g0211861 Lupinus albus
Lalb_Chr05g0224881 Lupinus albus
Lalb_Chr09g0321071 Lupinus albus
Lj1g0009374 Lotus japonicus
Lj2A188T37 Lonicera japonica
Lj4g0002308 Lotus japonicus
Lj4g0007820 Lotus japonicus
Lj8A229T68 Lonicera japonica
Lj8A232G66 Lonicera japonica
LjContig00312_ERROPOS870357g0014846 Lotus japonicus
Lsat_1_v5_gn_3_7860 Lactuca sativa
Lsat_1_v5_gn_6_6900 Lactuca sativa
Lsat_1_v5_gn_6_86861 Lactuca sativa
Manes.01G063100 Manihot esculenta
Manes.02G023500 Manihot esculenta
MBI17_g23517_MAGBIO Magnolia biondii
MBI17_g43539_MAGBIO Magnolia biondii
MD06G1079300 Malus domestica
MD14G1101900 Malus domestica
Medtr5g010440 Medicago truncatula
Medtr8g098510 Medicago truncatula
MELO3C005660.2 Cucumis melo
MELO3C016348.2 Cucumis melo
Migut.A00785 Erythranthe guttata
Migut.E01105 Erythranthe guttata
MSTRG.25593 Avicennia marina
Nitab4.5_0000360g0170 Nicotiana tabacum
Nitab4.5_0002270g0040 Nicotiana tabacum
Nitab4.5_0002270g0050 Nicotiana tabacum
Nitab4.5_0002776g0090 Nicotiana tabacum
Nitab4.5_0009194g0010 Nicotiana tabacum
Nn1g01473 Nelumbo nucifera
Nn6g33485 Nelumbo nucifera
Oeu009072.1 Olea europaea
Oeu009179.1 Olea europaea
Oeu011059.1 Olea europaea
Oeu049734.1 Olea europaea
Os04g0534166 Oryza sativa ssp. japonica
Os04g0534200 Oryza sativa ssp. japonica
Os04g0683600 Oryza sativa ssp. japonica
Peaxi162Scf00119g00412 Petunia axillaris
Peaxi162Scf01294g00332 Petunia axillaris
PGR031G3444 Punica granatum
PGSC0003DMG400004972 Solanum tuberosum
PGSC0003DMG400012218 Solanum tuberosum
Phvul.002G156600 Phaseolus vulgaris
Phvul.002G287900 Phaseolus vulgaris
Potri.001G106600 Populus trichocarpa
Potri.003G124800 Populus trichocarpa
Prupe.5G097500 Prunus persica
Psat0s748g0080 Pisum sativum
Psat7g034600 Pisum sativum
PSO063G2339 Papaver somniferum
PSO478G2420 Papaver somniferum
PSO782G2062 Papaver somniferum
QL01p003134 Quercus lobata
QL12p018315 Quercus lobata
RcHm_v2.0_Chr7g0198241 Rosa chinensis
Rhsim02G0227200 Rhododendron simsii
RhsimUnG0098700 Rhododendron simsii
Sabra01G0080600 Salix brachista
Sabra03G0088400 Salix brachista
SalBow1G4746 Salvia bowleyana
SalBow6G4208 Salvia bowleyana
Sc01g0009460 Simmondsia chinensis
Sed0019878 Sechium edule
Sed0021064 Sechium edule
SEGI_36402 Sequoiadendron giganteum
SGA_v2.0_scaffold144G35953 Striga asiatica
SGA_v2.0_scaffold253G45124 Striga asiatica
SGA_v2.0_scaffold385G50470 Striga asiatica
SHI07115 Sapria himalayana
Solyc08g080830.3 Solanum lycopersicum
Solyc12g056300.3 Solanum lycopersicum
Sopen08g029130 Solanum pennellii
Sopen12g028850 Solanum pennellii
Sp2g01180 Schrenkiella parvula
Sp7g00730 Schrenkiella parvula
SpUn0010_0210 Schrenkiella parvula
TAR374G1707 Trochodendron aralioides
TAR375G0100 Trochodendron aralioides
TAR622G0812 Trochodendron aralioides
THA.LOC104809385 Tarenaya hassleriana
THA.LOC104823581 Tarenaya hassleriana
Thecc.03G276400 Theobroma cacao
Thhalv10023393m.g Eutrema salsugineum
Thhalv10027677m.g Eutrema salsugineum
TPR.G12948 Trifolium pratense
TPR.G35737 Trifolium pratense
TPR.G6628 Trifolium pratense
TWI60G0369 Tripterygium wilfordii
TWI81G0264 Tripterygium wilfordii
vmacro11311 Vaccinium macrocarpon
VMungo0251G0318 Vigna mungo
VMungo1215G1984 Vigna mungo
Zm00001eb065760 Zea mays
Zm00001eb075560 Zea mays
Zm00001eb132630 Zea mays

User provided reference genes

Program Settings