Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p12470 Brassica napus
A03p52640 Brassica napus
A08p15260 Brassica napus
Aa31LG6G3140 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.625 Anthoceros agrestis
Actinidia08425 Actinidia chinensis
Ah.11g049410 Amaranthus hybridus
AL7G33010 Arabidopsis lyrata
Aqoxy2G04091 Aquilegia oxysepala
Aqoxy4G02846 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.C0PQLN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FWV4H3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H3D12P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XVD0AF Arachis hypogaea
AT4G21110 Arabidopsis thaliana
ATR0705G200 Amborella trichopoda
ATR0796G338 Amborella trichopoda
Atru.chr3.3355 Acer truncatum
Atru.chr8.1602 Acer truncatum
AUR62033071 Chenopodium quinoa
AUR62034339 Chenopodium quinoa
AUR62042925 Chenopodium quinoa
BcaC01g00711 Brassica carinata
BcaC01g00714 Brassica carinata
BcaC09g51259 Brassica carinata
BcaNung03842 Brassica carinata
BcaNung03844 Brassica carinata
BcaNung06969 Brassica carinata
BolC1t01454H Brassica oleracea
BolC3t20631H Brassica oleracea
BolC7t45608H Brassica oleracea
BraA01t01193Z Brassica rapa
BraA08t33504Z Brassica rapa
C01p15050 Brassica napus
C03p83500 Brassica napus
C07p51080 Brassica napus
CAN.G644.17 Capsicum annuum
CAN.G824.8 Capsicum annuum
CANSAT64G0589 Cannabis sativa
CANSAT80G1600 Cannabis sativa
CANSAT80G1837 Cannabis sativa
CARHR227700 Cardamine hirsuta
Carub.0007s2031 Capsella rubella
Ca_17996_v3 Cicer arietinum L.
Ca_21584_v3 Cicer arietinum L.
CBR_g8275 Chara braunii
Cc06_g20940 Coffea canephora
Cc11_g05680 Coffea canephora
CDE02G4062 Ceratophyllum demersum
Cfa010070 Carpinus fangiana
Cfa016565 Carpinus fangiana
Ciclev10003137m.g Citrus clementina
Ciclev10010633m.g Citrus clementina
Ciclev10013306m.g Citrus clementina
Ciclev10029519m.g Citrus clementina
CiPaw.09G010100 Carya illinoinensis
CiPaw.10G006900 Carya illinoinensis
ClCG01G012550 Citrullus lanatus
ClCG04G009850 Citrullus lanatus
COL.COLO4_07507 Corchorus olitorius
COL.COLO4_19950 Corchorus olitorius
Cre10.g442400 Chlamydomonas reinhardtii
CsaV3_1G014600 Cucumis sativus L.
CsaV3_6G040490 Cucumis sativus L.
CSS0015211 Camellia sinensis var. sinensis
CSS0020416 Camellia sinensis var. sinensis
DCAR_009145 Daucus carota
DCAR_020772 Daucus carota
Dinv31656 Davidia involucrata
Duzib068G0395 Durio zibethinus
Duzib084G0743 Durio zibethinus
Duzib205G0671 Durio zibethinus
ECA246G5125 Erigeron canadensis
ECA248G1032 Erigeron canadensis
EL10Ac5g10554 Beta vulgaris
EL10Ac7g16182 Beta vulgaris
Eucgr.A01529 Eucalyptus grandis
FAN02G0859 Fragaria x ananassa
FAN05G0605 Fragaria x ananassa
FAN05G4476 Fragaria x ananassa
FAN09G0305 Fragaria x ananassa
FAN09G3635 Fragaria x ananassa
FAN14G0984 Fragaria x ananassa
FAN15G2446 Fragaria x ananassa
FAN18G1123 Fragaria x ananassa
FvH4_5g19590 Fragaria vesca
FvH4_6g18160 Fragaria vesca
Glyma.05G151700 Glycine max
Glyma.07G130900 Glycine max
Glyma.08G108500 Glycine max
Gohir.A08G165300 Gossypium hirsutum
Gohir.D08G184000 Gossypium hirsutum
Gorai.004G193300 Gossypium raimondii
GSVIVG01017759001 Vitis vinifera
HanXRQChr11g0351191 Helianthus annuus
HanXRQChr13g0404851 Helianthus annuus
Haze_19564 Corylus avellana
Haze_23435 Corylus avellana
Hma1.2p1_0324F.1_g125440 Hydrangea macrophylla
HPP92_011515 Vanilla planifolia
Hund19971 Selenicereus undatus
Hund20862 Selenicereus undatus
Lalb_Chr06g0163851 Lupinus albus
Lj4g0008043 Lotus japonicus
Lj5g0008246 Lotus japonicus
Lsat_1_v5_gn_1_48520 Lactuca sativa
Lsat_1_v5_gn_2_22600 Lactuca sativa
Manes.08G022800 Manihot esculenta
Manes.11G159100 Manihot esculenta
Mapoly0001s0351 Marchantia polymorpha
MBI15_g37107_MAGBIO Magnolia biondii
MBI15_g43462_MAGBIO Magnolia biondii
MCO10G339 Micromonas commoda
MD00G1001900 Malus domestica
MD06G1015500 Malus domestica
MD12G1021200 Malus domestica
MD14G1018400 Malus domestica
Medtr4g117260 Medicago truncatula
Medtr8g083120 Medicago truncatula
MELO3C004759.2 Cucumis melo
MELO3C024524.2 Cucumis melo
Migut.L01767 Erythranthe guttata
MSTRG.10357 Avicennia marina
MSTRG.26646 Avicennia marina
Nitab4.5_0000245g0050 Nicotiana tabacum
Nitab4.5_0000658g0040 Nicotiana tabacum
Nitab4.5_0001903g0080 Nicotiana tabacum
Nitab4.5_0001969g0070 Nicotiana tabacum
Nitab4.5_0002446g0160 Nicotiana tabacum
Nitab4.5_0004070g0020 Nicotiana tabacum
Nitab4.5_0004567g0070 Nicotiana tabacum
Nitab4.5_0006089g0020 Nicotiana tabacum
Nn1g06159 Nelumbo nucifera
Oeu009903.1 Olea europaea
Oeu018728.1 Olea europaea
Oeu056905.1 Olea europaea
Os01g0857700 Oryza sativa ssp. japonica
Os04g0646100 Oryza sativa ssp. japonica
Os05g0446300 Oryza sativa ssp. japonica
Os12g0149800 Oryza sativa ssp. japonica
Peaxi162Scf00002g00549 Petunia axillaris
Peaxi162Scf00290g00013 Petunia axillaris
PGR004G1144 Punica granatum
PGR042G2923 Punica granatum
PGSC0003DMG400002671 Solanum tuberosum
PGSC0003DMG400026544 Solanum tuberosum
Phvul.001G030700 Phaseolus vulgaris
Phvul.011G135400 Phaseolus vulgaris
Potri.004G186600 Populus trichocarpa
Potri.009G147000 Populus trichocarpa
Pp3c1_11070 Physcomitrium patens
Pp3c2_27530 Physcomitrium patens
PRCOL_00006389 Prasinoderma coloniale
Prupe.7G115100 Prunus persica
Psat4g031600 Pisum sativum
Psat7g075360 Pisum sativum
PSO250G0025 Papaver somniferum
PSO250G0039 Papaver somniferum
PSO339G4247 Papaver somniferum
PSO384G1983 Papaver somniferum
PSO384G4502 Papaver somniferum
PSO541G4575 Papaver somniferum
PSO675G1480 Papaver somniferum
QL01p013392 Quercus lobata
QL07p039876 Quercus lobata
RcHm_v2.0_Chr3g0472461 Rosa chinensis
RcHm_v2.0_Chr6g0267281 Rosa chinensis
Rhsim03G0078600 Rhododendron simsii
Rhsim09G0145100 Rhododendron simsii
Sabra04G0125800 Salix brachista
Sabra09G0113500 Salix brachista
Sabra09G0116000 Salix brachista
SalBow5G0056 Salvia bowleyana
Sc07g0005410 Simmondsia chinensis
Sc19g0000380 Simmondsia chinensis
Sed0009117 Sechium edule
SEGI_35347 Sequoiadendron giganteum
SGA_v2.0_scaffold172G39065 Striga asiatica
SGA_v2.0_scaffold36G14359 Striga asiatica
SHI13554 Sapria himalayana
SMO356G0371 Selaginella moellendorffii
SMO358G0120 Selaginella moellendorffii
Solyc09g009300.4 Solanum lycopersicum
Solyc11g067010.2 Solanum lycopersicum
Sopen09g004040 Solanum pennellii
Sopen11g026720 Solanum pennellii
Sp7g19200 Schrenkiella parvula
TAR633G0358 Trochodendron aralioides
TAR636G2590 Trochodendron aralioides
THA.LOC104800547 Tarenaya hassleriana
THA.LOC104826409 Tarenaya hassleriana
Thecc.03G242600 Theobroma cacao
Thecc.09G289500 Theobroma cacao
Thhalv10026504m.g Eutrema salsugineum
Thhalv10028987m.g Eutrema salsugineum
TPR.G11828 Trifolium pratense
TPR.G20125 Trifolium pratense
TPR.G6889 Trifolium pratense
TWI74G1100 Tripterygium wilfordii
unitig_8.g4963 Utricularia gibba
vmacro07387 Vaccinium macrocarpon
vmacro18023 Vaccinium macrocarpon
VMungo1127G1081 Vigna mungo
Zm00001eb147370 Zea mays
Zm00001eb147380 Zea mays
Zm00001eb366930 Zea mays
Zm00001eb366990 Zea mays

User provided reference genes

Program Settings