Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p36920 Brassica napus
A05p32350 Brassica napus
A06p04620 Brassica napus
A08p05000 Brassica napus
A08p05030 Brassica napus
Aa31LG10G5530 Aethionema arabicum
Aa31LG8G4380 Aethionema arabicum
Actinidia01059 Actinidia chinensis
Actinidia01060 Actinidia chinensis
Actinidia06398 Actinidia chinensis
Actinidia18504 Actinidia chinensis
Ah.05g168870 Amaranthus hybridus
AL1G54820 Arabidopsis lyrata
AL3G30510 Arabidopsis lyrata
Aqoxy2G00409 Aquilegia oxysepala
Aqoxy5G00334 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.63YDIT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B6KC6C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EDF5ZB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EP1R10 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G9V4C0 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NDVY4V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XT3RX0 Arachis hypogaea
AT1G48230 Arabidopsis thaliana
AT3G17430 Arabidopsis thaliana
ATR1136G027 Amborella trichopoda
Atru.chr4.3141 Acer truncatum
Atru.chr5.893 Acer truncatum
AUR62022452 Chenopodium quinoa
AUR62039325 Chenopodium quinoa
BcaB04g17456 Brassica carinata
BcaB04g20843 Brassica carinata
BcaB07g33781 Brassica carinata
BcaC05g28791 Brassica carinata
BcaC07g37162 Brassica carinata
BcaC08g43015 Brassica carinata
BcaC08g43017 Brassica carinata
BcaC09g48700 Brassica carinata
BolC1t04654H Brassica oleracea
BolC5t33640H Brassica oleracea
BolC6t35396H Brassica oleracea
BolC8t47347H Brassica oleracea
BraA01t03751Z Brassica rapa
BraA06t23666Z Brassica rapa
BraA08t32522Z Brassica rapa
C01p46810 Brassica napus
C05p49000 Brassica napus
C06p02700 Brassica napus
C08p05330 Brassica napus
CAN.G398.22 Capsicum annuum
CAN.G497.100 Capsicum annuum
CANSAT25G1945 Cannabis sativa
CANSAT78G2121 Cannabis sativa
CARHR037860 Cardamine hirsuta
CARHR092750 Cardamine hirsuta
Carub.0001s3737 Capsella rubella
Carub.0003s1715 Capsella rubella
Ca_09239_v3 Cicer arietinum L.
Ca_21380_v3 Cicer arietinum L.
Ca_26461_v3 Cicer arietinum L.
Ca_30148_v3 Cicer arietinum L.
Cc01_g17330 Coffea canephora
CDE04G3027 Ceratophyllum demersum
CDE07G1952 Ceratophyllum demersum
Cfa015724 Carpinus fangiana
Ciclev10005167m.g Citrus clementina
CiPaw.01G129900 Carya illinoinensis
CiPaw.02G069700 Carya illinoinensis
CiPaw.02G069800 Carya illinoinensis
CiPaw.07G124100 Carya illinoinensis
CiPaw.08G084100 Carya illinoinensis
ClCG04G007460 Citrullus lanatus
ClCG05G006840 Citrullus lanatus
Cpa.g.sc146.29 Carica papaya
CsaV3_3G015490 Cucumis sativus L.
CsaV3_4G025800 Cucumis sativus L.
CsaV3_6G000210 Cucumis sativus L.
CSS0017685 Camellia sinensis var. sinensis
CSS0036063 Camellia sinensis var. sinensis
CSS0038867 Camellia sinensis var. sinensis
CSS0042988 Camellia sinensis var. sinensis
DCAR_002549 Daucus carota
DCAR_012306 Daucus carota
DCAR_023400 Daucus carota
DCAR_026950 Daucus carota
DCAR_030422 Daucus carota
Dinv12092 Davidia involucrata
Dinv18026 Davidia involucrata
Dinv29515 Davidia involucrata
Dinv33163 Davidia involucrata
Duzib151G0280 Durio zibethinus
Duzib212G0655 Durio zibethinus
ECA246G1535 Erigeron canadensis
EL10Ac1g01769 Beta vulgaris
Eucgr.B03955 Eucalyptus grandis
Eucgr.H04120 Eucalyptus grandis
FAN07G0388 Fragaria x ananassa
FAN12G3361 Fragaria x ananassa
FAN17G2049 Fragaria x ananassa
FvH4_4g21460 Fragaria vesca
Glyma.03G223200 Glycine max
Glyma.09G078700 Glycine max
Glyma.13G120000 Glycine max
Glyma.15G188900 Glycine max
Glyma.17G040300 Glycine max
Glyma.19G220400 Glycine max
Gohir.A01G036200 Gossypium hirsutum
Gohir.A09G067300 Gossypium hirsutum
Gohir.D01G023595 Gossypium hirsutum
Gohir.D09G066900 Gossypium hirsutum
Gorai.002G032000 Gossypium raimondii
Gorai.006G081400 Gossypium raimondii
GSVIVG01017682001 Vitis vinifera
GSVIVG01028211001 Vitis vinifera
HanXRQChr09g0245821 Helianthus annuus
Haze_00774 Corylus avellana
Haze_05128 Corylus avellana
Hma1.2p1_0484F.1_g162920 Hydrangea macrophylla
Hma1.2p1_1160F.1_g262520 Hydrangea macrophylla
HPP92_003370 Vanilla planifolia
Hund17603 Selenicereus undatus
Hund26619 Selenicereus undatus
Lalb_Chr04g0260161 Lupinus albus
Lalb_Chr08g0233031 Lupinus albus
Lalb_Chr11g0073531 Lupinus albus
Lalb_Chr18g0046481 Lupinus albus
Lj1A9G43 Lonicera japonica
Lj1g0018517 Lotus japonicus
Lj6C700T8 Lonicera japonica
Lj6g0005825 Lotus japonicus
Lsat_1_v5_gn_0_45480 Lactuca sativa
Lsat_1_v5_gn_1_39900 Lactuca sativa
Manes.03G211400 Manihot esculenta
MBI06_g17220_MAGBIO Magnolia biondii
MD13G1141000 Malus domestica
MD16G1137100 Malus domestica
Medtr4g123900 Medicago truncatula
Medtr7g110380 Medicago truncatula
MELO3C003206.2 Cucumis melo
MELO3C006748.2 Cucumis melo
MELO3C033476.2 Cucumis melo
Migut.G01157 Erythranthe guttata
Migut.N00004 Erythranthe guttata
Migut.N03057 Erythranthe guttata
MSTRG.22039 Avicennia marina
MSTRG.9728 Avicennia marina
Nitab4.5_0000212g0260 Nicotiana tabacum
Nitab4.5_0002957g0030 Nicotiana tabacum
Nitab4.5_0003841g0030 Nicotiana tabacum
Nitab4.5_0007320g0030 Nicotiana tabacum
Nn6g35752 Nelumbo nucifera
Oeu016619.1 Olea europaea
Oeu018051.1 Olea europaea
Oeu037625.1 Olea europaea
Os03g0702700 Oryza sativa ssp. japonica
Peaxi162Scf00166g00427 Petunia axillaris
Peaxi162Scf00991g00219 Petunia axillaris
PGR031G1486 Punica granatum
PGSC0003DMG400001459 Solanum tuberosum
PGSC0003DMG400025156 Solanum tuberosum
Phvul.001G216900 Phaseolus vulgaris
Phvul.003G121200 Phaseolus vulgaris
Phvul.009G219500 Phaseolus vulgaris
Potri.008G214300 Populus trichocarpa
Potri.010G001700 Populus trichocarpa
Prupe.1G106200 Prunus persica
Psat0s2012g0120 Pisum sativum
Psat3g017920 Pisum sativum
PSO210G5412 Papaver somniferum
PSO832G0943 Papaver somniferum
QL06p014135 Quercus lobata
QL12p034484 Quercus lobata
RcHm_v2.0_Chr4g0427391 Rosa chinensis
RcHm_v2.0_Chr4g0427491 Rosa chinensis
Rhsim04G0247900 Rhododendron simsii
Rhsim13G0000100 Rhododendron simsii
Sabra10G0001400 Salix brachista
SalBow6G1353 Salvia bowleyana
Sc10g0008510 Simmondsia chinensis
Sed0015802 Sechium edule
Sed0025915 Sechium edule
SEGI_17772 Sequoiadendron giganteum
SEGI_24452 Sequoiadendron giganteum
SGA_v2.0_scaffold227G43199 Striga asiatica
SGA_v2.0_scaffold449G51792 Striga asiatica
SHI00060 Sapria himalayana
SMO119G0146 Selaginella moellendorffii
Solyc02g066910.3 Solanum lycopersicum
Solyc02g088900.3 Solanum lycopersicum
Sopen02g016100 Solanum pennellii
Sopen02g033590 Solanum pennellii
Sp1g35190 Schrenkiella parvula
Sp3g15600 Schrenkiella parvula
TAR365G0537 Trochodendron aralioides
TAR633G1520 Trochodendron aralioides
THA.LOC104802615 Tarenaya hassleriana
THA.LOC104821811 Tarenaya hassleriana
Thecc.04G312300 Theobroma cacao
Thhalv10011587m.g Eutrema salsugineum
Thhalv10020956m.g Eutrema salsugineum
TPR.G12557 Trifolium pratense
TPR.G4044 Trifolium pratense
TWI09G0158 Tripterygium wilfordii
unitig_26.g10602 Utricularia gibba
unitig_749.g13348 Utricularia gibba
unitig_8.g3104 Utricularia gibba
vmacro02364 Vaccinium macrocarpon
vmacro08008 Vaccinium macrocarpon
VMungo1215G1179 Vigna mungo
VMungo1309G2024 Vigna mungo
VMungo1383G1303 Vigna mungo
Zm00001eb054220 Zea mays

User provided reference genes

Program Settings