Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p12360 Brassica napus
A03p48750 Brassica napus
A04p07200 Brassica napus
Aa31LG10G7260 Aethionema arabicum
Actinidia06714 Actinidia chinensis
Actinidia34675 Actinidia chinensis
AL5G32750 Arabidopsis lyrata
AL8G34310 Arabidopsis lyrata
Aqoxy2G01557 Aquilegia oxysepala
Aqoxy3G04343 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1W7ASM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BT04C1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RQNS35 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U5ZVAW Arachis hypogaea
AT3G52170 Arabidopsis thaliana
AT5G58210 Arabidopsis thaliana
ATR1126G067 Amborella trichopoda
Atru.chr11.746 Acer truncatum
Atru.chr9.28 Acer truncatum
AUR62002709 Chenopodium quinoa
AUR62002713 Chenopodium quinoa
AUR62030168 Chenopodium quinoa
AUR62030173 Chenopodium quinoa
AUR62033080 Chenopodium quinoa
AUR62042766 Chenopodium quinoa
BcaB01g04480 Brassica carinata
BcaB01g04545 Brassica carinata
BcaB01g04549 Brassica carinata
BcaC02g09274 Brassica carinata
BolC3t13894H Brassica oleracea
BraA03t10548Z Brassica rapa
BraA03t13975Z Brassica rapa
C03p14510 Brassica napus
C07p46840 Brassica napus
CAN.G42.6 Capsicum annuum
CANSAT56G4476 Cannabis sativa
CANSAT80G0398 Cannabis sativa
CARHR161930 Cardamine hirsuta
CARHR272010 Cardamine hirsuta
Carub.0005s1853 Capsella rubella
Carub.0008s1875 Capsella rubella
Ca_25286_v3 Cicer arietinum L.
Cc00_g01550 Coffea canephora
Cc02_g10490 Coffea canephora
CDE03G0520 Ceratophyllum demersum
CDE04G2158 Ceratophyllum demersum
Cfa001770 Carpinus fangiana
Cfa017812 Carpinus fangiana
Ciclev10020800m.g Citrus clementina
Ciclev10031613m.g Citrus clementina
CiPaw.01G264600 Carya illinoinensis
CiPaw.16G075800 Carya illinoinensis
ClCG03G001720 Citrullus lanatus
ClCG08G007950 Citrullus lanatus
COL.COLO4_32868 Corchorus olitorius
Cpa.g.sc124.3 Carica papaya
Cpa.g.sc128.73 Carica papaya
CsaV3_1G033920 Cucumis sativus L.
CsaV3_2G032770 Cucumis sativus L.
CSS0004401 Camellia sinensis var. sinensis
CSS0050149 Camellia sinensis var. sinensis
DCAR_014755 Daucus carota
DCAR_019058 Daucus carota
Dinv20859 Davidia involucrata
Dinv20860 Davidia involucrata
Dinv22201 Davidia involucrata
Dinv31270 Davidia involucrata
Duzib068G0937 Durio zibethinus
Duzib084G1007 Durio zibethinus
Duzib114G0110 Durio zibethinus
Duzib128G0427 Durio zibethinus
ECA233G3433 Erigeron canadensis
ECA233G4523 Erigeron canadensis
ECA238G3554 Erigeron canadensis
EL10Ac8g19653 Beta vulgaris
EL10Ac9g22929 Beta vulgaris
Eucgr.G02731 Eucalyptus grandis
Eucgr.K02337 Eucalyptus grandis
FAN01G0293 Fragaria x ananassa
FAN03G3430 Fragaria x ananassa
FAN04G2538 Fragaria x ananassa
FAN06G1743 Fragaria x ananassa
FAN08G2522 Fragaria x ananassa
FAN10G1411 Fragaria x ananassa
FAN13G1571 Fragaria x ananassa
FAN13G2350 Fragaria x ananassa
FAN18G3766 Fragaria x ananassa
FvH4_5g27110 Fragaria vesca
FvH4_7g06800 Fragaria vesca
Glyma.09G160700 Glycine max
Glyma.10G199900 Glycine max
Glyma.16G210200 Glycine max
Glyma.20G190600 Glycine max
Gohir.A01G128900 Gossypium hirsutum
Gohir.A03G090600 Gossypium hirsutum
Gohir.D01G118500 Gossypium hirsutum
Gohir.D02G118700 Gossypium hirsutum
Gorai.002G144500 Gossypium raimondii
Gorai.005G135100 Gossypium raimondii
GSVIVG01005025001 Vitis vinifera
GSVIVG01024238001 Vitis vinifera
HanXRQChr08g0226101 Helianthus annuus
HanXRQChr12g0368421 Helianthus annuus
HanXRQChr14g0456191 Helianthus annuus
Haze_16786 Corylus avellana
Haze_18401 Corylus avellana
Hma1.2p1_0016F.1_g010880 Hydrangea macrophylla
Hma1.2p1_0454F.1_g156300 Hydrangea macrophylla
HPP92_025600 Vanilla planifolia
HPP92_025640 Vanilla planifolia
HPP92_027826 Vanilla planifolia
Hund06726 Selenicereus undatus
Lalb_Chr02g0151171 Lupinus albus
Lalb_Chr14g0370111 Lupinus albus
Lalb_Chr21g0313091 Lupinus albus
Lj2g0026608 Lotus japonicus
Lj5g0011528 Lotus japonicus
Lsat_1_v5_gn_2_103100 Lactuca sativa
Lsat_1_v5_gn_8_22741 Lactuca sativa
Lsat_1_v5_gn_8_540 Lactuca sativa
Manes.07G093300 Manihot esculenta
Manes.10G053400 Manihot esculenta
MBI03_g11904_MAGBIO Magnolia biondii
MBI17_g07069_MAGBIO Magnolia biondii
MD02G1237300 Malus domestica
MD02G1241700 Malus domestica
MD07G1075000 Malus domestica
MD10G1047400 Malus domestica
Medtr1g090853 Medicago truncatula
Medtr6g069010 Medicago truncatula
MELO3C019853.2 Cucumis melo
MELO3C020667.2 Cucumis melo
Migut.F01893 Erythranthe guttata
Migut.N02713 Erythranthe guttata
MSTRG.22259 Avicennia marina
MSTRG.27506 Avicennia marina
MSTRG.404 Avicennia marina
Nitab4.5_0000593g0350 Nicotiana tabacum
Nitab4.5_0006383g0010 Nicotiana tabacum
Nitab4.5_0008182g0020 Nicotiana tabacum
Nitab4.5_0009307g0060 Nicotiana tabacum
Nn2g13905 Nelumbo nucifera
Nn3g18533 Nelumbo nucifera
Nn6g35167 Nelumbo nucifera
Oeu046660.1 Olea europaea
Oeu050291.1 Olea europaea
Oeu060293.1 Olea europaea
Os02g0638000 Oryza sativa ssp. japonica
Os12g0528000 Oryza sativa ssp. japonica
Peaxi162Scf00171g00028 Petunia axillaris
Peaxi162Scf00321g00037 Petunia axillaris
PGR044G1600 Punica granatum
PGR142G3005 Punica granatum
PGSC0003DMG400027329 Solanum tuberosum
PGSC0003DMG401015209 Solanum tuberosum
Phvul.004G136200 Phaseolus vulgaris
Phvul.007G141300 Phaseolus vulgaris
Potri.008G029500 Populus trichocarpa
Potri.010G231900 Populus trichocarpa
Potri.018G151900 Populus trichocarpa
Prupe.2G095200 Prunus persica
Prupe.8G056400 Prunus persica
Psat1g117960 Pisum sativum
Psat3g181880 Pisum sativum
Psat3g181920 Pisum sativum
Psat5g043880 Pisum sativum
Psat6g174040 Pisum sativum
Psat6g205960 Pisum sativum
PSO063G6649 Papaver somniferum
PSO339G4934 Papaver somniferum
PSO782G0732 Papaver somniferum
PSO801G0244 Papaver somniferum
QL08p052921 Quercus lobata
QL10p035701 Quercus lobata
RcHm_v2.0_Chr1g0336511 Rosa chinensis
RcHm_v2.0_Chr7g0218101 Rosa chinensis
Rhsim03G0110800 Rhododendron simsii
Rhsim10G0138900 Rhododendron simsii
Sabra08G0019600 Salix brachista
Sabra10G0179700 Salix brachista
Sabra18G0127300 Salix brachista
SalBow4G0791 Salvia bowleyana
Sc12g0007990 Simmondsia chinensis
Sc20g0001440 Simmondsia chinensis
Sed0002498 Sechium edule
Sed0004109 Sechium edule
Sed0009649 Sechium edule
Sed0017585 Sechium edule
SEGI_29881 Sequoiadendron giganteum
SGA_v2.0_scaffold14G06996 Striga asiatica
SGA_v2.0_scaffold28G11776 Striga asiatica
SGA_v2.0_scaffold62G21362 Striga asiatica
Solyc03g019840.4 Solanum lycopersicum
Solyc11g007850.2 Solanum lycopersicum
Sopen03g029780 Solanum pennellii
Sopen11g003710 Solanum pennellii
Sp5g10100 Schrenkiella parvula
Sp6g19870 Schrenkiella parvula
TAR311G0002 Trochodendron aralioides
TAR476G0002 Trochodendron aralioides
TAR629G2050 Trochodendron aralioides
TAR636G1084 Trochodendron aralioides
THA.LOC104805620 Tarenaya hassleriana
THA.LOC104824314 Tarenaya hassleriana
Thecc.10G090800 Theobroma cacao
Thecc.10G147400 Theobroma cacao
Thhalv10010306m.g Eutrema salsugineum
Thhalv10014108m.g Eutrema salsugineum
TPR.G31356 Trifolium pratense
TPR.G37771 Trifolium pratense
TWI38G2135 Tripterygium wilfordii
TWI81G0899 Tripterygium wilfordii
unitig_746.g26880 Utricularia gibba
unitig_899.g14485 Utricularia gibba
vmacro12841 Vaccinium macrocarpon
vmacro12842 Vaccinium macrocarpon
VMungo0464G0225 Vigna mungo
VMungo0720G1705 Vigna mungo
Zm00001eb137780 Zea mays
Zm00001eb185650 Zea mays
Zm00001eb248340 Zea mays
Zm00001eb410830 Zea mays

User provided reference genes

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