Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p35720 Brassica napus
A05p39010 Brassica napus
Aa31LG3G2570 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3312 Anthoceros agrestis
Actinidia31298 Actinidia chinensis
Actinidia32464 Actinidia chinensis
Ah.06g193720 Amaranthus hybridus
Ah.08g211090 Amaranthus hybridus
Ah.15g091220 Amaranthus hybridus
AL3G21370 Arabidopsis lyrata
Aqoxy116s004 Aquilegia oxysepala
Aqoxy116s005 Aquilegia oxysepala
Aqoxy1G00987 Aquilegia oxysepala
Aqoxy300s001 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5MEL2D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.79UAYX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E570TZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Q5JGPT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U4C9QK Arachis hypogaea
AT3G10040 Arabidopsis thaliana
ATR0605G078 Amborella trichopoda
ATR0820G084 Amborella trichopoda
Atru.chr8.1670 Acer truncatum
AUR62019276 Chenopodium quinoa
AUR62019278 Chenopodium quinoa
AUR62037901 Chenopodium quinoa
BcaB03g11576 Brassica carinata
BcaB03g11577 Brassica carinata
BcaB07g32999 Brassica carinata
BcaC01g04257 Brassica carinata
BolC3t16610H Brassica oleracea
BolC5t34460H Brassica oleracea
BraA03t12746Z Brassica rapa
BraA05t22692Z Brassica rapa
C03p43390 Brassica napus
C05p58040 Brassica napus
CAN.G575.65 Capsicum annuum
CAN.G824.47 Capsicum annuum
CANSAT11G1593 Cannabis sativa
CANSAT80G0978 Cannabis sativa
CARHR084540 Cardamine hirsuta
Carub.0003s0914 Capsella rubella
Ca_01290_v3 Cicer arietinum L.
Ca_08954_v3 Cicer arietinum L.
Ca_11609_v3 Cicer arietinum L.
Ca_29664_v3 Cicer arietinum L.
Cc00_g09000 Coffea canephora
Cc00_g31390 Coffea canephora
CDE06G2517 Ceratophyllum demersum
CDE08G1541 Ceratophyllum demersum
CDE10G0624 Ceratophyllum demersum
Cfa009747 Carpinus fangiana
Cfa016509 Carpinus fangiana
Ciclev10013486m.g Citrus clementina
Ciclev10015189m.g Citrus clementina
CiPaw.09G007000 Carya illinoinensis
CiPaw.10G003900 Carya illinoinensis
CiPaw.13G162800 Carya illinoinensis
ClCG10G019510 Citrullus lanatus
COL.COLO4_22286 Corchorus olitorius
Cpa.g.sc5.104 Carica papaya
Cpa.g.sc84.71 Carica papaya
CsaV3_3G036680 Cucumis sativus L.
CsaV3_4G024170 Cucumis sativus L.
DCAR_002060 Daucus carota
DCAR_015025 Daucus carota
DCAR_017636 Daucus carota
Dinv35855 Davidia involucrata
Duzib093G1958 Durio zibethinus
Duzib106G0290 Durio zibethinus
Duzib128G0532 Durio zibethinus
Duzib168G2306 Durio zibethinus
Duzib170G0804 Durio zibethinus
ECA248G1669 Erigeron canadensis
ECA248G2382 Erigeron canadensis
EL10Ac7g16761 Beta vulgaris
Eucgr.A01572 Eucalyptus grandis
Eucgr.J00785 Eucalyptus grandis
FAN02G4281 Fragaria x ananassa
FAN05G1490 Fragaria x ananassa
FAN05G3564 Fragaria x ananassa
FAN09G1812 Fragaria x ananassa
FAN11G2161 Fragaria x ananassa
FAN14G3650 Fragaria x ananassa
FAN21G3319 Fragaria x ananassa
FAN25G0564 Fragaria x ananassa
FvH4_3g29090 Fragaria vesca
FvH4_6g17470 Fragaria vesca
Glyma.03G189600 Glycine max
Glyma.10G064900 Glycine max
Glyma.13G149700 Glycine max
Glyma.13G340600 Glycine max
Glyma.15G033800 Glycine max
Glyma.19G190000 Glycine max
Gohir.A01G210600 Gossypium hirsutum
Gohir.A07G124900 Gossypium hirsutum
Gohir.A09G142500 Gossypium hirsutum
Gohir.D01G199500 Gossypium hirsutum
Gohir.D07G129300 Gossypium hirsutum
Gohir.D09G138600 Gossypium hirsutum
Gorai.001G139700 Gossypium raimondii
Gorai.002G243900 Gossypium raimondii
Gorai.006G159000 Gossypium raimondii
GSVIVG01025297001 Vitis vinifera
GSVIVG01033746001 Vitis vinifera
HanXRQChr01g0028121 Helianthus annuus
HanXRQChr11g0350961 Helianthus annuus
HanXRQChr13g0405941 Helianthus annuus
Haze_19511 Corylus avellana
Haze_23106 Corylus avellana
Haze_23110 Corylus avellana
Hma1.2p1_0027F.1_g017170 Hydrangea macrophylla
Hma1.2p1_0084F.1_g043010 Hydrangea macrophylla
HPP92_009751 Vanilla planifolia
HPP92_009764 Vanilla planifolia
HPP92_019686 Vanilla planifolia
Lalb_Chr01g0018431 Lupinus albus
Lalb_Chr06g0172121 Lupinus albus
Lalb_Chr21g0315361 Lupinus albus
Lalb_Chr22g0352361 Lupinus albus
Lj1g0015637 Lotus japonicus
Lj2C635G6 Lonicera japonica
Lj2P126T14 Lonicera japonica
Lj2P645T9 Lonicera japonica
Lj3g0019147 Lotus japonicus
Lj5g0014548 Lotus japonicus
Lsat_1_v5_gn_1_50761 Lactuca sativa
Lsat_1_v5_gn_1_66180 Lactuca sativa
Manes.06G166200 Manihot esculenta
Manes.08G018600 Manihot esculenta
Manes.09G061200 Manihot esculenta
Manes.14G001700 Manihot esculenta
MBI04_g13628_MAGBIO Magnolia biondii
MBI04_g28759_MAGBIO Magnolia biondii
MBI17_g12065_MAGBIO Magnolia biondii
MD03G1179000 Malus domestica
MD11G1198200 Malus domestica
MD12G1096800 Malus domestica
MD14G1094300 Malus domestica
Medtr1g061640 Medicago truncatula
Medtr2g098080 Medicago truncatula
Medtr7g103390 Medicago truncatula
MELO3C009422.2 Cucumis melo
MELO3C014604.2 Cucumis melo
Migut.J00492 Erythranthe guttata
MSTRG.19216 Avicennia marina
MSTRG.26659 Avicennia marina
MSTRG.5796 Avicennia marina
Nitab4.5_0000680g0050 Nicotiana tabacum
Nitab4.5_0001925g0150 Nicotiana tabacum
Nitab4.5_0006164g0030 Nicotiana tabacum
Nitab4.5_0010330g0020 Nicotiana tabacum
Nn1g01809 Nelumbo nucifera
Nn2g13956 Nelumbo nucifera
Nn2g15453 Nelumbo nucifera
Nn8g40997 Nelumbo nucifera
Oeu023842.1 Olea europaea
Oeu038884.1 Olea europaea
Os01g0318400 Oryza sativa ssp. japonica
Peaxi162Scf00062g00102 Petunia axillaris
Peaxi162Scf00795g00028 Petunia axillaris
PGR004G1417 Punica granatum
PGSC0003DMG400002728 Solanum tuberosum
PGSC0003DMG400023839 Solanum tuberosum
Phvul.001G185100 Phaseolus vulgaris
Phvul.007G224600 Phaseolus vulgaris
Phvul.L009943 Phaseolus vulgaris
Potri.001G019200 Populus trichocarpa
Potri.003G204700 Populus trichocarpa
Potri.006G117500 Populus trichocarpa
Potri.016G096300 Populus trichocarpa
Prupe.4G244300 Prunus persica
Prupe.7G120800 Prunus persica
Psat3g036560 Pisum sativum
Psat5g284880 Pisum sativum
Psat6g077000 Pisum sativum
PSO017G2244 Papaver somniferum
PSO017G3570 Papaver somniferum
PSO017G6175 Papaver somniferum
PSO339G2417 Papaver somniferum
PSO801G0203 Papaver somniferum
QL01p005164 Quercus lobata
QL07p040934 Quercus lobata
RcHm_v2.0_Chr3g0471711 Rosa chinensis
RcHm_v2.0_Chr5g0051441 Rosa chinensis
Rhsim04G0136700 Rhododendron simsii
Rhsim13G0223100 Rhododendron simsii
Sabra01G0013600 Salix brachista
Sabra03G0151400 Salix brachista
Sabra06G0092400 Salix brachista
Sabra16G0100700 Salix brachista
SalBow3G3162 Salvia bowleyana
Sc02g0001260 Simmondsia chinensis
Sed0024657 Sechium edule
Sed0028092 Sechium edule
SEGI_08744 Sequoiadendron giganteum
SEGI_15953 Sequoiadendron giganteum
SGA_v2.0_scaffold40G15434 Striga asiatica
SHI27820 Sapria himalayana
Solyc09g008830.3 Solanum lycopersicum
Solyc12g100040.2 Solanum lycopersicum
Sopen09g003620 Solanum pennellii
Sopen12g034660 Solanum pennellii
Sp3g08350 Schrenkiella parvula
TAR623G1422 Trochodendron aralioides
TAR633G2175 Trochodendron aralioides
THA.LOC104811130 Tarenaya hassleriana
THA.LOC104816381 Tarenaya hassleriana
THA.LOC104824502 Tarenaya hassleriana
Thecc.05G078500 Theobroma cacao
Thecc.09G229100 Theobroma cacao
Thhalv10020795m.g Eutrema salsugineum
TPR.G31010 Trifolium pratense
TPR.G5693 Trifolium pratense
TPR.G6872 Trifolium pratense
TWI13G0014 Tripterygium wilfordii
TWI53G0068 Tripterygium wilfordii
TWI74G0398 Tripterygium wilfordii
unitig_27.g25393 Utricularia gibba
unitig_578.g15774 Utricularia gibba
unitig_744.g24687 Utricularia gibba
vmacro08811 Vaccinium macrocarpon
VMungo0720G0516 Vigna mungo
VMungo1080G0418 Vigna mungo
VMungo1383G2420 Vigna mungo
Zm00001eb130740 Zea mays
Zm00001eb340550 Zea mays

User provided reference genes

Program Settings