Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p36420 Brassica napus
A01p36450 Brassica napus
A03p40500 Brassica napus
A05p31770 Brassica napus
Aa31LG7G2850 Aethionema arabicum
Aa31LG8G4880 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.2391 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.682 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.685 Anthoceros agrestis
Actinidia08852 Actinidia chinensis
Actinidia36784 Actinidia chinensis
Ah.10g026630 Amaranthus hybridus
Ah.12g064280 Amaranthus hybridus
AL1G55260 Arabidopsis lyrata
AL3G31180 Arabidopsis lyrata
Aqoxy2G02471 Aquilegia oxysepala
Aqoxy3G03446 Aquilegia oxysepala
Aqoxy3G03447 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2J6PAY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3XG8T9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.3XM56G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.49BGXI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.67MFWE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7D414J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A9DBCF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B6R500 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EPGX33 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L5RF1Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LP7NGD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M733BB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RN9C70 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.U3PP50 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZCQ994 Arachis hypogaea
AT1G48605 Arabidopsis thaliana
AT3G18030 Arabidopsis thaliana
ATR1120G027 Amborella trichopoda
ATR1120G083 Amborella trichopoda
ATR1120G133 Amborella trichopoda
ATR1134G062 Amborella trichopoda
Atru.chr9.1000 Acer truncatum
AUR62011542 Chenopodium quinoa
AUR62016361 Chenopodium quinoa
AUR62037675 Chenopodium quinoa
BcaB04g18977 Brassica carinata
BcaB04g20800 Brassica carinata
BcaB06g25870 Brassica carinata
BcaC01g03713 Brassica carinata
BcaC01g03715 Brassica carinata
BcaC05g28724 Brassica carinata
BcaC09g48762 Brassica carinata
BolC1t04579H Brassica oleracea
BolC3t17225H Brassica oleracea
BolC5t33561H Brassica oleracea
BraA01t03707Z Brassica rapa
BraA03t13209Z Brassica rapa
BraA05t22009Z Brassica rapa
C01p46170 Brassica napus
C03p49340 Brassica napus
C05p48250 Brassica napus
CAN.G774.4 Capsicum annuum
CARHR038210 Cardamine hirsuta
CARHR093340 Cardamine hirsuta
Carub.0001s3774 Capsella rubella
Carub.0003s1774 Capsella rubella
Ca_07838_v3 Cicer arietinum L.
Ca_23821_v3 Cicer arietinum L.
Ca_23826_v3 Cicer arietinum L.
CBR_g28078 Chara braunii
Cc05_g01460 Coffea canephora
Cc06_g20670 Coffea canephora
CDE02G3380 Ceratophyllum demersum
CDE09G0352 Ceratophyllum demersum
Cfa012436 Carpinus fangiana
Cfa022019 Carpinus fangiana
Ciclev10022229m.g Citrus clementina
CiPaw.11G092900 Carya illinoinensis
CiPaw.12G063500 Carya illinoinensis
ClCG03G003440 Citrullus lanatus
ClCG06G017690 Citrullus lanatus
COL.COLO4_26320 Corchorus olitorius
Cpa.g.sc36.74 Carica papaya
Cpa.g.sc4.63 Carica papaya
Cre10.g423450 Chlamydomonas reinhardtii
CsaV3_1G000770 Cucumis sativus L.
CsaV3_1G009240 Cucumis sativus L.
CSS0017851 Camellia sinensis var. sinensis
DCAR_016748 Daucus carota
DCAR_021602 Daucus carota
Dinv11112 Davidia involucrata
Duzib041G0791 Durio zibethinus
Duzib116G0381 Durio zibethinus
ECA246G1448 Erigeron canadensis
ECA247G2468 Erigeron canadensis
EL10Ac1g00873 Beta vulgaris
Eucgr.K01291 Eucalyptus grandis
FAN04G0027 Fragaria x ananassa
FAN13G3304 Fragaria x ananassa
FAN18G1762 Fragaria x ananassa
FvH4_5g07250 Fragaria vesca
Glyma.03G020900 Glycine max
Glyma.07G082800 Glycine max
Glyma.09G167700 Glycine max
Glyma.09G266901 Glycine max
Glyma.18G223400 Glycine max
Glyma.18G223550 Glycine max
Glyma.18G223700 Glycine max
Glyma.18G223800 Glycine max
Gohir.A05G194200 Gossypium hirsutum
Gohir.A06G010300 Gossypium hirsutum
Gohir.D05G197400 Gossypium hirsutum
Gohir.D06G007700 Gossypium hirsutum
Gorai.009G202300 Gossypium raimondii
Gorai.010G010400 Gossypium raimondii
GSVIVG01007555001 Vitis vinifera
HanXRQChr02g0035121 Helianthus annuus
HanXRQChr04g0100751 Helianthus annuus
Haze_08235 Corylus avellana
Haze_08237 Corylus avellana
Haze_26416 Corylus avellana
Haze_27179 Corylus avellana
Hma1.2p1_0046F.1_g027650 Hydrangea macrophylla
Hund00541 Selenicereus undatus
Hund06571 Selenicereus undatus
Lalb_Chr01g0021271 Lupinus albus
Lalb_Chr13g0291641 Lupinus albus
Lj1g0011280 Lotus japonicus
Lj1g0020531 Lotus japonicus
Lj5A100T67 Lonicera japonica
Lsat_1_v5_gn_1_28461 Lactuca sativa
Lsat_1_v5_gn_5_13160 Lactuca sativa
Manes.06G064700 Manihot esculenta
Manes.06G064800 Manihot esculenta
Manes.14G106900 Manihot esculenta
Mapoly0035s0118 Marchantia polymorpha
MBI14_g19141_MAGBIO Magnolia biondii
MBI14_g44928_MAGBIO Magnolia biondii
MBI14_g48210_MAGBIO Magnolia biondii
MBI18_g34563_MAGBIO Magnolia biondii
MCO07G669 Micromonas commoda
MD06G1157900 Malus domestica
MD14G1015700 Malus domestica
MD14G1164500 Malus domestica
Medtr7g074480 Medicago truncatula
Medtr7g075710 Medicago truncatula
Medtr7g075750 Medicago truncatula
Medtr7g075760 Medicago truncatula
Medtr7g076045 Medicago truncatula
Medtr7g076050 Medicago truncatula
Medtr7g076070 Medicago truncatula
Medtr8g035610 Medicago truncatula
MELO3C002329.2 Cucumis melo
MELO3C026216.2 Cucumis melo
Migut.C00391 Erythranthe guttata
Migut.C01237 Erythranthe guttata
Migut.N00872 Erythranthe guttata
Migut.O00902 Erythranthe guttata
MSTRG.1508 Avicennia marina
MSTRG.1512 Avicennia marina
Nitab4.5_0000360g0150 Nicotiana tabacum
Nitab4.5_0000580g0010 Nicotiana tabacum
Nitab4.5_0002776g0070 Nicotiana tabacum
Nitab4.5_0015143g0010 Nicotiana tabacum
Nn3g17545 Nelumbo nucifera
Oeu030585.1 Olea europaea
Os06g0199500 Oryza sativa ssp. japonica
Peaxi162Scf00119g00619 Petunia axillaris
Peaxi162Scf01294g00318 Petunia axillaris
Peaxi162Scf01294g00319 Petunia axillaris
PGR031G0115 Punica granatum
PGSC0003DMG400004975 Solanum tuberosum
Phvul.008G074300 Phaseolus vulgaris
Phvul.008G074500 Phaseolus vulgaris
Phvul.010G086000 Phaseolus vulgaris
Potri.015G089600 Populus trichocarpa
Pp3c13_11510 Physcomitrium patens
Pp3c4_31830 Physcomitrium patens
PRCOL_00001775 Prasinoderma coloniale
Prupe.5G158000 Prunus persica
Prupe.7G044900 Prunus persica
Prupe.7G117800 Prunus persica
Prupe.7G117900 Prunus persica
Psat4g196200 Pisum sativum
Psat4g223920 Pisum sativum
PSO063G0222 Papaver somniferum
PSO339G3213 Papaver somniferum
PSO782G5438 Papaver somniferum
PSO801G0687 Papaver somniferum
QL10p005413 Quercus lobata
QL12p005529 Quercus lobata
RcHm_v2.0_Chr3g0460241 Rosa chinensis
RcHm_v2.0_Chr4g0419061 Rosa chinensis
RcHm_v2.0_Chr7g0191381 Rosa chinensis
Rhsim04G0164200 Rhododendron simsii
Rhsim12G0171600 Rhododendron simsii
Sabra15G0112000 Salix brachista
SalBow6G3718 Salvia bowleyana
Sc04g0001010 Simmondsia chinensis
Sed0000365 Sechium edule
Sed0003126 Sechium edule
Sed0022612 Sechium edule
SEGI_07670 Sequoiadendron giganteum
SEGI_21906 Sequoiadendron giganteum
SEGI_32468 Sequoiadendron giganteum
SGA_v2.0_scaffold118G32461 Striga asiatica
SHI04274 Sapria himalayana
SMO134G0228 Selaginella moellendorffii
Solyc08g080920.3 Solanum lycopersicum
Solyc12g056270.2 Solanum lycopersicum
Sopen08g029230 Solanum pennellii
Sopen12g028790 Solanum pennellii
Sp1g35570 Schrenkiella parvula
Sp3g16140 Schrenkiella parvula
TAR374G1192 Trochodendron aralioides
TAR622G0791 Trochodendron aralioides
THA.LOC104812168 Tarenaya hassleriana
THA.LOC104820352 Tarenaya hassleriana
Thecc.08G026400 Theobroma cacao
Thhalv10012360m.g Eutrema salsugineum
Thhalv10021520m.g Eutrema salsugineum
TPR.G19629 Trifolium pratense
TWI39G0772 Tripterygium wilfordii
TWI63G1061 Tripterygium wilfordii
unitig_46.g18023 Utricularia gibba
unitig_748.g7744 Utricularia gibba
unitig_82.g27137 Utricularia gibba
vmacro16704 Vaccinium macrocarpon
vmacro22315 Vaccinium macrocarpon
VMungo0331G1155 Vigna mungo
VMungo1383G0995 Vigna mungo
VMungo1383G2094 Vigna mungo
VMungo1383G2734 Vigna mungo
Zm00001eb005060 Zea mays
Zm00001eb120850 Zea mays
Zm00001eb373930 Zea mays

User provided reference genes

Program Settings