Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p23260 Brassica napus
A03p22600 Brassica napus
A04p29980 Brassica napus
A05p06260 Brassica napus
Aa31LG10G9100 Aethionema arabicum
Aa31LG5G19410 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3726 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.224 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.3626 Anthoceros agrestis
Actinidia20748 Actinidia chinensis
Actinidia29707 Actinidia chinensis
Actinidia33918 Actinidia chinensis
Ah.07g199960 Amaranthus hybridus
Ah.16g103650 Amaranthus hybridus
AL4G37890 Arabidopsis lyrata
AL5G32270 Arabidopsis lyrata
Aqoxy2G00846 Aquilegia oxysepala
Aqoxy4G02497 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1Z4Q40 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.32NLQV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.42U138 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.74MQIJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D0LYHK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DKZE4I Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G6C2VL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J970EA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T081CJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UNQ88F Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XH9UDA Arachis hypogaea
AT2G40170 Arabidopsis thaliana
AT3G51810 Arabidopsis thaliana
ATR0681G119 Amborella trichopoda
Atru.chr12.68 Acer truncatum
Atru.chr8.2270 Acer truncatum
Atru.chr8.2271 Acer truncatum
AUR62007217 Chenopodium quinoa
AUR62018784 Chenopodium quinoa
AUR62030479 Chenopodium quinoa
AUR62030818 Chenopodium quinoa
BcaB01g03562 Brassica carinata
BcaB01g03564 Brassica carinata
BcaB02g09044 Brassica carinata
BcaB06g29135 Brassica carinata
BcaC01g05423 Brassica carinata
BcaC02g12131 Brassica carinata
BcaC06g33009 Brassica carinata
BcaC09g50105 Brassica carinata
BcaNung00369 Brassica carinata
BolC1t02822H Brassica oleracea
BolC3t15064H Brassica oleracea
BolC4t22347H Brassica oleracea
BraA01t02236Z Brassica rapa
BraA03t11486Z Brassica rapa
BraA04t18510Z Brassica rapa
BraA05t19594Z Brassica rapa
C01p28900 Brassica napus
C03p26790 Brassica napus
C04p07220 Brassica napus
CAN.G349.5 Capsicum annuum
CAN.G350.50 Capsicum annuum
CAN.G479.55 Capsicum annuum
CANSAT35G1254 Cannabis sativa
CANSAT35G2001 Cannabis sativa
CARHR112240 Cardamine hirsuta
CARHR135200 Cardamine hirsuta
CARHR161440 Cardamine hirsuta
Carub.0004s2238 Capsella rubella
Carub.0005s1816 Capsella rubella
Carub.0033s0007 Capsella rubella
Ca_07010_v3 Cicer arietinum L.
Ca_07661_v3 Cicer arietinum L.
Ca_20215_v3 Cicer arietinum L.
CBR_g12204 Chara braunii
Cc02_g06270 Coffea canephora
Cc05_g00080 Coffea canephora
Cc06_g01110 Coffea canephora
CDE07G1692 Ceratophyllum demersum
CDE07G1963 Ceratophyllum demersum
CDE12G0135 Ceratophyllum demersum
Cfa001304 Carpinus fangiana
Cfa017178 Carpinus fangiana
Ciclev10013203m.g Citrus clementina
Ciclev10013756m.g Citrus clementina
Ciclev10033050m.g Citrus clementina
CiPaw.02G193500 Carya illinoinensis
CiPaw.10G157800 Carya illinoinensis
ClCG04G006910 Citrullus lanatus
COL.COLO4_03384 Corchorus olitorius
COL.COLO4_25755 Corchorus olitorius
COL.COLO4_25757 Corchorus olitorius
COL.COLO4_25759 Corchorus olitorius
COL.COLO4_25761 Corchorus olitorius
Cpa.g.sc19.160 Carica papaya
Cpa.g.sc2485.2 Carica papaya
CsaV3_4G026350 Cucumis sativus L.
CsaV3_4G026360 Cucumis sativus L.
CSS0017907 Camellia sinensis var. sinensis
DCAR_011825 Daucus carota
DCAR_024009 Daucus carota
DCAR_024819 Daucus carota
Dinv10610 Davidia involucrata
Dinv13158 Davidia involucrata
Duzib106G1163 Durio zibethinus
Duzib114G0873 Durio zibethinus
Duzib128G1868 Durio zibethinus
ECA238G2208 Erigeron canadensis
EL10Ac2g04851 Beta vulgaris
EL10Ac5g12539 Beta vulgaris
EL10As14g24073 Beta vulgaris
Eucgr.G03071 Eucalyptus grandis
Eucgr.J00194 Eucalyptus grandis
Eucgr.J00195 Eucalyptus grandis
FAN01G0906 Fragaria x ananassa
FAN06G1923 Fragaria x ananassa
FAN06G4496 Fragaria x ananassa
FAN06G4559 Fragaria x ananassa
FAN09G2291 Fragaria x ananassa
FAN09G3157 Fragaria x ananassa
FAN09G4186 Fragaria x ananassa
FAN10G3490 Fragaria x ananassa
FAN14G1198 Fragaria x ananassa
FAN14G3539 Fragaria x ananassa
FAN14G3614 Fragaria x ananassa
FAN14G5453 Fragaria x ananassa
FvH4_6g11140 Fragaria vesca
FvH4_6g11160 Fragaria vesca
FvH4_6g11170 Fragaria vesca
FvH4_6g11180 Fragaria vesca
FvH4_7g24640 Fragaria vesca
Glyma.01G119600 Glycine max
Glyma.03G056000 Glycine max
Glyma.07G152400 Glycine max
Glyma.18G203500 Glycine max
Gohir.A06G162700 Gossypium hirsutum
Gohir.A09G166300 Gossypium hirsutum
Gohir.A10G240000 Gossypium hirsutum
Gohir.D06G168200 Gossypium hirsutum
Gohir.D09G161900 Gossypium hirsutum
Gohir.D10G251900 Gossypium hirsutum
Gorai.006G183600 Gossypium raimondii
Gorai.010G196300 Gossypium raimondii
Gorai.011G292400 Gossypium raimondii
GSVIVG01011188001 Vitis vinifera
GSVIVG01032795001 Vitis vinifera
GSVIVG01032796001 Vitis vinifera
HanXRQChr07g0203211 Helianthus annuus
HanXRQChr07g0203301 Helianthus annuus
HanXRQChr13g0406571 Helianthus annuus
HanXRQChr13g0406581 Helianthus annuus
HanXRQChr17g0552411 Helianthus annuus
Haze_17241 Corylus avellana
Haze_21026 Corylus avellana
HPP92_012035 Vanilla planifolia
Hund14875 Selenicereus undatus
Lalb_Chr07g0192351 Lupinus albus
Lalb_Chr19g0124411 Lupinus albus
Lj1g0003767 Lotus japonicus
Lj3A949T21 Lonicera japonica
Lj3g0009747 Lotus japonicus
Lj8A64T52 Lonicera japonica
Lsat_1_v5_gn_2_124221 Lactuca sativa
Lsat_1_v5_gn_5_150761 Lactuca sativa
Manes.09G106800 Manihot esculenta
Manes.10G010700 Manihot esculenta
Mapoly0009s0218 Marchantia polymorpha
Mapoly0105s0030 Marchantia polymorpha
Mapoly0105s0031 Marchantia polymorpha
Mapoly0105s0032 Marchantia polymorpha
MBI03_g05517_MAGBIO Magnolia biondii
MD00G1061900 Malus domestica
MD00G1062000 Malus domestica
MD04G1121100 Malus domestica
MD12G1172000 Malus domestica
Medtr4g016960 Medicago truncatula
Medtr7g069250 Medicago truncatula
MELO3C026001.2 Cucumis melo
MELO3C026002.2 Cucumis melo
Migut.F01409 Erythranthe guttata
Migut.L02028 Erythranthe guttata
Nitab4.5_0000261g0150 Nicotiana tabacum
Nitab4.5_0000797g0130 Nicotiana tabacum
Nitab4.5_0003391g0040 Nicotiana tabacum
Nitab4.5_0006808g0010 Nicotiana tabacum
Nitab4.5_0015439g0010 Nicotiana tabacum
Nn2g10893 Nelumbo nucifera
Nn2g13170 Nelumbo nucifera
Oeu048272.1 Olea europaea
Oeu054383.2 Olea europaea
Oeu059464.1 Olea europaea
Os01g0159600 Oryza sativa ssp. japonica
Os05g0349800 Oryza sativa ssp. japonica
Peaxi162Scf00045g02527 Petunia axillaris
Peaxi162Scf00284g00813 Petunia axillaris
PGR142G0314 Punica granatum
PGSC0003DMG400006648 Solanum tuberosum
PGSC0003DMG400008497 Solanum tuberosum
Phvul.008G096400 Phaseolus vulgaris
Phvul.010G075000 Phaseolus vulgaris
Potri.010G187100 Populus trichocarpa
Pp3c16_20740 Physcomitrium patens
Pp3c22_8970 Physcomitrium patens
Prupe.2G252100 Prunus persica
Prupe.6G280200 Prunus persica
Prupe.6G280300 Prunus persica
Psat0s2780g0040 Pisum sativum
Psat7g244720 Pisum sativum
Psat7g244760 Pisum sativum
PSO339G1057 Papaver somniferum
PSO339G2037 Papaver somniferum
PSO339G4395 Papaver somniferum
PSO339G5526 Papaver somniferum
PSO384G0535 Papaver somniferum
PSO384G4361 Papaver somniferum
PSO384G5020 Papaver somniferum
QL07p035070 Quercus lobata
QL07p035075 Quercus lobata
QL08p063283 Quercus lobata
QL08p063365 Quercus lobata
RcHm_v2.0_Chr3g0462601 Rosa chinensis
RcHm_v2.0_Chr3g0462611 Rosa chinensis
RcHm_v2.0_Chr3g0462621 Rosa chinensis
Rhsim03G0144900 Rhododendron simsii
Sabra10G0144300 Salix brachista
Sc01g0007780 Simmondsia chinensis
Sc07g0006710 Simmondsia chinensis
Sc07g0006720 Simmondsia chinensis
Sc10g0002450 Simmondsia chinensis
Sc22g0001340 Simmondsia chinensis
Sed0016912 Sechium edule
SEGI_05780 Sequoiadendron giganteum
SEGI_12433 Sequoiadendron giganteum
SGA_v2.0_scaffold110G31206 Striga asiatica
SHI18080 Sapria himalayana
SMO358G0198 Selaginella moellendorffii
SMO358G0372 Selaginella moellendorffii
SMO358G0661 Selaginella moellendorffii
Solyc06g048840.3 Solanum lycopersicum
Solyc09g014750.1 Solanum lycopersicum
Sopen06g015130 Solanum pennellii
Sopen09g007600 Solanum pennellii
Sp4g22520 Schrenkiella parvula
Sp5g10460 Schrenkiella parvula
TAR629G3231 Trochodendron aralioides
TAR636G2478 Trochodendron aralioides
THA.LOC104810109 Tarenaya hassleriana
THA.LOC104824322 Tarenaya hassleriana
Thecc.05G012500 Theobroma cacao
Thecc.10G014300 Theobroma cacao
Thecc.10G014400 Theobroma cacao
Thhalv10010923m.g Eutrema salsugineum
Thhalv10017713m.g Eutrema salsugineum
TPR.G14315 Trifolium pratense
TPR.G35444 Trifolium pratense
TWI73G1082 Tripterygium wilfordii
TWI74G0213 Tripterygium wilfordii
VMungo0331G0699 Vigna mungo
VMungo1383G0374 Vigna mungo
Zm00001eb286150 Zea mays
Zm00001eb286170 Zea mays

User provided reference genes

Program Settings