Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p02160 Brassica napus
A07p24680 Brassica napus
A08p10900 Brassica napus
A09p51780 Brassica napus
Aa31LG10G13820 Aethionema arabicum
Aa31LG6G12310 Aethionema arabicum
Aa31LG9G16290 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.2646 Anthoceros agrestis
Actinidia09560 Actinidia chinensis
Actinidia21199 Actinidia chinensis
Actinidia23555 Actinidia chinensis
Actinidia24626 Actinidia chinensis
Ah.02g125480 Amaranthus hybridus
Ah.09g235960 Amaranthus hybridus
AL1G45180 Arabidopsis lyrata
AL5G41410 Arabidopsis lyrata
Aqoxy4G00284 Aquilegia oxysepala
Aqoxy4G00860 Aquilegia oxysepala
Aqoxy7G02299 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AIM0M3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BNKV9R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EJKV9U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I3B116 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RKEW7U Arachis hypogaea
AT1G30890 Arabidopsis thaliana
AT3G59500 Arabidopsis thaliana
ATR0751G046 Amborella trichopoda
Atru.chr3.498 Acer truncatum
Atru.chr6.3524 Acer truncatum
AUR62003993 Chenopodium quinoa
AUR62014741 Chenopodium quinoa
AUR62016921 Chenopodium quinoa
AUR62040253 Chenopodium quinoa
BcaB02g07122 Brassica carinata
BcaB02g07460 Brassica carinata
BcaB02g08220 Brassica carinata
BcaB04g18199 Brassica carinata
BcaC02g08073 Brassica carinata
BcaC02g10056 Brassica carinata
BcaC04g18610 Brassica carinata
BcaC06g30918 Brassica carinata
BcaC07g37795 Brassica carinata
BcaC07g40480 Brassica carinata
BcaC08g44992 Brassica carinata
BcaNung05941 Brassica carinata
BolC1t05173H Brassica oleracea
BolC3t15329H Brassica oleracea
BolC4t24902H Brassica oleracea
BolC6t37785H Brassica oleracea
BolC8t48186H Brassica oleracea
BolC8t51052H Brassica oleracea
BraA04t15943Z Brassica rapa
BraA07t30113Z Brassica rapa
BraA08t33087Z Brassica rapa
BraA09t40613Z Brassica rapa
C01p30880 Brassica napus
C03p29830 Brassica napus
C03p39310 Brassica napus
C04p33410 Brassica napus
C04p58720 Brassica napus
C06p26220 Brassica napus
C08p34510 Brassica napus
C09p57290 Brassica napus
CAN.G160.54 Capsicum annuum
CAN.G771.52 Capsicum annuum
CANSAT78G2385 Cannabis sativa
CARHR030380 Cardamine hirsuta
CARHR169880 Cardamine hirsuta
Carub.0001s2923 Capsella rubella
Carub.0005s2623 Capsella rubella
Ca_20734_v3 Cicer arietinum L.
CBR_g12765 Chara braunii
Cc00_g26680 Coffea canephora
Cc06_g14850 Coffea canephora
Cc08_g10010 Coffea canephora
Cc08_g12630 Coffea canephora
CDE04G1101 Ceratophyllum demersum
CDE04G3217 Ceratophyllum demersum
CDE06G0568 Ceratophyllum demersum
Cfa015065 Carpinus fangiana
Cfa015179 Carpinus fangiana
Cfa015180 Carpinus fangiana
Ciclev10010648m.g Citrus clementina
Ciclev10021639m.g Citrus clementina
CiPaw.01G098200 Carya illinoinensis
CiPaw.02G053400 Carya illinoinensis
ClCG09G013960 Citrullus lanatus
COL.COLO4_06905 Corchorus olitorius
COL.COLO4_12976 Corchorus olitorius
Cpa.g.sc46.165 Carica papaya
Cpa.g.sc8.48 Carica papaya
Cpa.g.sc9.299 Carica papaya
Cre17.g704550 Chlamydomonas reinhardtii
CsaV3_4G003750 Cucumis sativus L.
CSS0005561 Camellia sinensis var. sinensis
CSS0014682 Camellia sinensis var. sinensis
CSS0040712 Camellia sinensis var. sinensis
CSS0048904 Camellia sinensis var. sinensis
DCAR_005702 Daucus carota
DCAR_012534 Daucus carota
DCAR_018471 Daucus carota
DCAR_019400 Daucus carota
Dinv22749 Davidia involucrata
Dinv41369 Davidia involucrata
Duzib151G0267 Durio zibethinus
Duzib175G0009 Durio zibethinus
Duzib211G0242 Durio zibethinus
Duzib212G0805 Durio zibethinus
Duzib268G0260 Durio zibethinus
ECA236G4547 Erigeron canadensis
EL10Ac3g05982 Beta vulgaris
EL10Ac6g15634 Beta vulgaris
Eucgr.A00096 Eucalyptus grandis
Eucgr.H00367 Eucalyptus grandis
FAN07G0742 Fragaria x ananassa
FAN12G3655 Fragaria x ananassa
FAN15G3633 Fragaria x ananassa
FAN17G0114 Fragaria x ananassa
FAN24G0348 Fragaria x ananassa
FAN27G2488 Fragaria x ananassa
FAN27G3001 Fragaria x ananassa
FvH4_2g17570 Fragaria vesca
FvH4_4g10910 Fragaria vesca
Glyma.08G256100 Glycine max
Glyma.13G049600 Glycine max
Glyma.18G279000 Glycine max
Glyma.19G042700 Glycine max
Gohir.A02G012200 Gossypium hirsutum
Gohir.A05G322500 Gossypium hirsutum
Gohir.D02G012900 Gossypium hirsutum
Gohir.D05G325000 Gossypium hirsutum
Gohir.D08G273650 Gossypium hirsutum
Gorai.004G292100 Gossypium raimondii
Gorai.005G016400 Gossypium raimondii
Gorai.009G349200 Gossypium raimondii
GSVIVG01010792001 Vitis vinifera
GSVIVG01023621001 Vitis vinifera
HanXRQChr01g0017251 Helianthus annuus
HanXRQChr01g0020721 Helianthus annuus
HanXRQChr04g0113441 Helianthus annuus
Haze_01482 Corylus avellana
Haze_13432 Corylus avellana
Hma1.2p1_0273F.1_g109870 Hydrangea macrophylla
Hma1.2p1_2680F.1_g326840 Hydrangea macrophylla
Hma1.2p1_2941F.1_g330620 Hydrangea macrophylla
HPP92_014285 Vanilla planifolia
HPP92_017791 Vanilla planifolia
HPP92_024496 Vanilla planifolia
Hund21269 Selenicereus undatus
Hund23636 Selenicereus undatus
Lalb_Chr02g0158471 Lupinus albus
Lalb_Chr04g0258201 Lupinus albus
Lalb_Chr17g0336651 Lupinus albus
Lj1A65G52 Lonicera japonica
Lj1g0020770 Lotus japonicus
Lj2A1154T62 Lonicera japonica
Lj2g0016991 Lotus japonicus
Lj3A24T17 Lonicera japonica
Lj9A717G71 Lonicera japonica
Lsat_1_v5_gn_8_91160 Lactuca sativa
Manes.04G043900 Manihot esculenta
Manes.11G121900 Manihot esculenta
Manes.14G144500 Manihot esculenta
Mapoly0029s0036 Marchantia polymorpha
Mapoly0058s0027 Marchantia polymorpha
MBI17_g34954_MAGBIO Magnolia biondii
MBI18_g30442_MAGBIO Magnolia biondii
MBI18_g38394_MAGBIO Magnolia biondii
MBI19_g39051_MAGBIO Magnolia biondii
MCO10G387 Micromonas commoda
MD09G1251200 Malus domestica
MD10G1149100 Malus domestica
MD17G1243500 Malus domestica
Medtr6g016655 Medicago truncatula
Medtr7g020800 Medicago truncatula
MELO3C017680.2 Cucumis melo
Migut.K00319 Erythranthe guttata
Migut.N03274 Erythranthe guttata
MSTRG.1433 Avicennia marina
MSTRG.25374 Avicennia marina
Nitab4.5_0000813g0090 Nicotiana tabacum
Nitab4.5_0001511g0010 Nicotiana tabacum
Nitab4.5_0001571g0090 Nicotiana tabacum
Nitab4.5_0002085g0170 Nicotiana tabacum
Nitab4.5_0005869g0070 Nicotiana tabacum
Nitab4.5_0006211g0020 Nicotiana tabacum
Nn3g18566 Nelumbo nucifera
Nn4g25165 Nelumbo nucifera
Oeu011794.1 Olea europaea
Oeu012325.1 Olea europaea
Oeu038831.1 Olea europaea
Os04g0165400 Oryza sativa ssp. japonica
Os06g0620600 Oryza sativa ssp. japonica
Peaxi162Scf00052g01910 Petunia axillaris
Peaxi162Scf00126g00626 Petunia axillaris
Peaxi162Scf00401g00530 Petunia axillaris
Peaxi162Scf00517g00314 Petunia axillaris
PGR031G3278 Punica granatum
PGR142G3168 Punica granatum
PGSC0003DMG400018951 Solanum tuberosum
PGSC0003DMG400041014 Solanum tuberosum
PGSC0003DMG402020085 Solanum tuberosum
Phvul.004G048100 Phaseolus vulgaris
Phvul.008G021900 Phaseolus vulgaris
Potri.007G129900 Populus trichocarpa
Potri.014G175900 Populus trichocarpa
Potri.017G028425 Populus trichocarpa
Potri.017G028500 Populus trichocarpa
Pp3c23_1060 Physcomitrium patens
Pp3c2_23300 Physcomitrium patens
PRCOL_00006975 Prasinoderma coloniale
Prupe.3G156000 Prunus persica
Prupe.8G187900 Prunus persica
Psat1g063080 Pisum sativum
Psat3g191880 Pisum sativum
PSO063G6078 Papaver somniferum
PSO170G5615 Papaver somniferum
PSO407G0283 Papaver somniferum
PSO541G5366 Papaver somniferum
PSO675G5581 Papaver somniferum
QL05p011083 Quercus lobata
QL10p050280 Quercus lobata
QL10p050484 Quercus lobata
RcHm_v2.0_Chr4g0406461 Rosa chinensis
RcHm_v2.0_Chr6g0282511 Rosa chinensis
Rhsim09G0025000 Rhododendron simsii
Sabra07G0105800 Salix brachista
Sabra14G0134800 Salix brachista
Sabra17G0017300 Salix brachista
SalBow2G3414 Salvia bowleyana
SalBow7G0367 Salvia bowleyana
SalBow7G2583 Salvia bowleyana
Sc06g0002250 Simmondsia chinensis
Sc19g0002880 Simmondsia chinensis
Sed0012688 Sechium edule
Sed0020331 Sechium edule
SEGI_32861 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10451 Striga asiatica
SGA_v2.0_scaffold28G11990 Striga asiatica
SMO203G0159 Selaginella moellendorffii
Solyc06g083630.4 Solanum lycopersicum
Solyc07g005670.3 Solanum lycopersicum
Sopen06g035020 Solanum pennellii
Sopen09g025190 Solanum pennellii
Sp1g26790 Schrenkiella parvula
Sp5g03660 Schrenkiella parvula
TAR362G0642 Trochodendron aralioides
TAR365G0426 Trochodendron aralioides
TAR371G0258 Trochodendron aralioides
TAR626G1618 Trochodendron aralioides
THA.LOC104798571 Tarenaya hassleriana
THA.LOC104803767 Tarenaya hassleriana
THA.LOC104812698 Tarenaya hassleriana
Thecc.01G208600 Theobroma cacao
Thecc.04G176900 Theobroma cacao
Thecc.09G028900 Theobroma cacao
Thhalv10006169m.g Eutrema salsugineum
Thhalv10008472m.g Eutrema salsugineum
TPR.G20558 Trifolium pratense
TPR.G27152 Trifolium pratense
TWI15G1183 Tripterygium wilfordii
TWI34G0481 Tripterygium wilfordii
TWI36G0904 Tripterygium wilfordii
TWI38G1668 Tripterygium wilfordii
unitig_748.g7690 Utricularia gibba
unitig_8.g3347 Utricularia gibba
vmacro00527 Vaccinium macrocarpon
vmacro00543 Vaccinium macrocarpon
vmacro14842 Vaccinium macrocarpon
VMungo0464G1710 Vigna mungo
VMungo1383G3580 Vigna mungo
Zm00001eb134470 Zea mays
Zm00001eb206110 Zea mays
Zm00001eb367760 Zea mays

User provided reference genes

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