Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p22250 Brassica napus
A07p42760 Brassica napus
A10p30350 Brassica napus
Aa31LG11G7060 Aethionema arabicum
Aa31LG4G7250 Aethionema arabicum
Aa31LG4G7260 Aethionema arabicum
Aa31LG5G19890 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4931 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_368.173 Anthoceros agrestis
Actinidia02919 Actinidia chinensis
Actinidia21270 Actinidia chinensis
Actinidia33957 Actinidia chinensis
Actinidia33958 Actinidia chinensis
Ah.05g169040 Amaranthus hybridus
Ah.10g037060 Amaranthus hybridus
Ah.16g102650 Amaranthus hybridus
AL2G37440 Arabidopsis lyrata
AL4G37220 Arabidopsis lyrata
AL6G15980 Arabidopsis lyrata
Aqoxy2G02340 Aquilegia oxysepala
Aqoxy6G00292 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2WDM3Q Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.7SU9VE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8JC9PH Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CJT9N9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E72KC6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MIET7U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YE7TPW Arachis hypogaea
AT1G77260 Arabidopsis thaliana
AT2G39750 Arabidopsis thaliana
AT5G06050 Arabidopsis thaliana
ATR0049G056 Amborella trichopoda
ATR0559G309 Amborella trichopoda
Atru.chr12.361 Acer truncatum
Atru.chr12.378 Acer truncatum
Atru.chr13.1593 Acer truncatum
AUR62007698 Chenopodium quinoa
AUR62012138 Chenopodium quinoa
AUR62013444 Chenopodium quinoa
AUR62040697 Chenopodium quinoa
BcaB02g09092 Brassica carinata
BcaC01g05473 Brassica carinata
BcaC02g12107 Brassica carinata
BcaC06g32311 Brassica carinata
BcaC06g32316 Brassica carinata
BcaNung04999 Brassica carinata
BolC3t15019H Brassica oleracea
BolC4t22396H Brassica oleracea
BolC6t40161H Brassica oleracea
BolC9t59837H Brassica oleracea
BraA03t11456Z Brassica rapa
BraA05t19633Z Brassica rapa
BraA07t31802Z Brassica rapa
BraA10t45074Z Brassica rapa
C03p26340 Brassica napus
C04p07790 Brassica napus
C06p51430 Brassica napus
C09p70780 Brassica napus
CAN.G1184.8 Capsicum annuum
CAN.G46.45 Capsicum annuum
CANSAT56G2358 Cannabis sativa
CANSAT80G1084 Cannabis sativa
CARHR070730 Cardamine hirsuta
CARHR134600 Cardamine hirsuta
CARHR207180 Cardamine hirsuta
Carub.0002s2414 Capsella rubella
Carub.0004s2181 Capsella rubella
Carub.0006s0491 Capsella rubella
Ca_05901_v3 Cicer arietinum L.
Ca_08190_v3 Cicer arietinum L.
Ca_12641_v3 Cicer arietinum L.
Cc02_g07410 Coffea canephora
CDE02G2533 Ceratophyllum demersum
CDE03G0298 Ceratophyllum demersum
CDE09G1241 Ceratophyllum demersum
Cfa001424 Carpinus fangiana
Cfa018417 Carpinus fangiana
Ciclev10030904m.g Citrus clementina
CiPaw.01G291500 Carya illinoinensis
CiPaw.16G022300 Carya illinoinensis
ClCG07G003600 Citrullus lanatus
ClCG11G006660 Citrullus lanatus
COL.COLO4_25493 Corchorus olitorius
COL.COLO4_36872 Corchorus olitorius
Cpa.g.sc19.270 Carica papaya
Cpa.g.sc64.154 Carica papaya
CsaV3_5G008400 Cucumis sativus L.
CsaV3_6G001350 Cucumis sativus L.
CSS0026147 Camellia sinensis var. sinensis
CSS0039011 Camellia sinensis var. sinensis
CSS0041977 Camellia sinensis var. sinensis
DCAR_011732 Daucus carota
DCAR_027595 Daucus carota
Dinv16253 Davidia involucrata
Dinv26047 Davidia involucrata
Dinv26048 Davidia involucrata
Dinv27261 Davidia involucrata
Duzib106G0748 Durio zibethinus
Duzib114G0831 Durio zibethinus
ECA233G6005 Erigeron canadensis
ECA238G1379 Erigeron canadensis
ECA246G4487 Erigeron canadensis
EL10Ac1g01368 Beta vulgaris
EL10Ac2g04699 Beta vulgaris
Eucgr.G02963 Eucalyptus grandis
FAN01G0588 Fragaria x ananassa
FAN01G2898 Fragaria x ananassa
FAN03G2796 Fragaria x ananassa
FAN06G0725 Fragaria x ananassa
FAN06G3915 Fragaria x ananassa
FAN10G1173 Fragaria x ananassa
FAN10G3561 Fragaria x ananassa
FAN15G0981 Fragaria x ananassa
FAN20G0537 Fragaria x ananassa
FAN24G2876 Fragaria x ananassa
FAN27G2932 Fragaria x ananassa
FvH4_2g28020 Fragaria vesca
FvH4_7g23080 Fragaria vesca
Glyma.02G250400 Glycine max
Glyma.11G222800 Glycine max
Glyma.13G035300 Glycine max
Glyma.14G066200 Glycine max
Glyma.14G156500 Glycine max
Glyma.18G034800 Glycine max
Gohir.A02G070400 Gossypium hirsutum
Gohir.A05G238500 Gossypium hirsutum
Gohir.A05G347800 Gossypium hirsutum
Gohir.A10G222500 Gossypium hirsutum
Gohir.D02G077500 Gossypium hirsutum
Gohir.D04G064500 Gossypium hirsutum
Gohir.D05G240400 Gossypium hirsutum
Gohir.D10G234800 Gossypium hirsutum
Gorai.005G087000 Gossypium raimondii
Gorai.009G249300 Gossypium raimondii
Gorai.011G268400 Gossypium raimondii
Gorai.012G072300 Gossypium raimondii
GSVIVG01008797001 Vitis vinifera
GSVIVG01016479001 Vitis vinifera
HanXRQChr05g0149721 Helianthus annuus
HanXRQChr08g0221171 Helianthus annuus
HanXRQChr10g0312731 Helianthus annuus
HanXRQChr12g0369541 Helianthus annuus
Haze_17119 Corylus avellana
Haze_17644 Corylus avellana
Hma1.2p1_0039F.1_g024520 Hydrangea macrophylla
Hma1.2p1_1732F.1_g299780 Hydrangea macrophylla
HPP92_014292 Vanilla planifolia
HPP92_019845 Vanilla planifolia
Hund13796 Selenicereus undatus
Lalb_Chr04g0251021 Lupinus albus
Lalb_Chr10g0101481 Lupinus albus
Lalb_Chr10g0104741 Lupinus albus
Lalb_Chr15g0084541 Lupinus albus
Lalb_Chr18g0053051 Lupinus albus
Lj1C943G10 Lonicera japonica
Lj1g0012668 Lotus japonicus
Lj4C674G9 Lonicera japonica
Lj6g0009259 Lotus japonicus
Lj8C79T5 Lonicera japonica
LjContig00141g0015060 Lotus japonicus
Lsat_1_v5_gn_2_118160 Lactuca sativa
Lsat_1_v5_gn_6_110501 Lactuca sativa
Lsat_1_v5_gn_8_14860 Lactuca sativa
Manes.02G169500 Manihot esculenta
Manes.07G119500 Manihot esculenta
Manes.10G026200 Manihot esculenta
Mapoly0001s0032 Marchantia polymorpha
MBI05_g35177_MAGBIO Magnolia biondii
MBI14_g32123_MAGBIO Magnolia biondii
MD01G1139400 Malus domestica
MD07G1203800 Malus domestica
MD15G1132900 Malus domestica
Medtr1g029730 Medicago truncatula
Medtr3g068990 Medicago truncatula
Medtr5g080720 Medicago truncatula
MELO3C008236.2 Cucumis melo
MELO3C023888.2 Cucumis melo
Migut.C01076 Erythranthe guttata
Migut.F00747 Erythranthe guttata
Migut.F01275 Erythranthe guttata
MSTRG.25353 Avicennia marina
MSTRG.265 Avicennia marina
MSTRG.27365 Avicennia marina
MSTRG.8275 Avicennia marina
Nitab4.5_0000647g0210 Nicotiana tabacum
Nitab4.5_0002625g0030 Nicotiana tabacum
Nitab4.5_0003635g0030 Nicotiana tabacum
Nitab4.5_0004074g0020 Nicotiana tabacum
Nitab4.5_0005829g0040 Nicotiana tabacum
Nitab4.5_0008967g0010 Nicotiana tabacum
Nn1g08942 Nelumbo nucifera
Nn2g11234 Nelumbo nucifera
Nn5g28455 Nelumbo nucifera
Oeu011129.1 Olea europaea
Oeu017563.1 Olea europaea
Oeu047170.1 Olea europaea
Oeu059737.1 Olea europaea
Os01g0846600 Oryza sativa ssp. japonica
Peaxi162Scf00066g00613 Petunia axillaris
Peaxi162Scf00164g01311 Petunia axillaris
PGR042G0149 Punica granatum
PGR142G3596 Punica granatum
PGSC0003DMG400023033 Solanum tuberosum
PGSC0003DMG400027137 Solanum tuberosum
Phvul.001G067200 Phaseolus vulgaris
Phvul.001G236300 Phaseolus vulgaris
Phvul.008G231000 Phaseolus vulgaris
Potri.002G077100 Populus trichocarpa
Potri.008G059500 Populus trichocarpa
Potri.010G199300 Populus trichocarpa
Pp3c24_13610 Physcomitrium patens
Pp3c5_20380 Physcomitrium patens
Pp3c7_9190 Physcomitrium patens
Prupe.1G488500 Prunus persica
Prupe.2G239900 Prunus persica
Psat5g124280 Pisum sativum
Psat6g040800 Pisum sativum
PSO339G2585 Papaver somniferum
PSO339G3648 Papaver somniferum
PSO384G3510 Papaver somniferum
PSO513G0085 Papaver somniferum
QL08p061339 Quercus lobata
QL09p031600 Quercus lobata
QL09p032134 Quercus lobata
QL09p032144 Quercus lobata
RcHm_v2.0_Chr1g0368331 Rosa chinensis
RcHm_v2.0_Chr6g0296881 Rosa chinensis
Rhsim04G0099900 Rhododendron simsii
Sabra02G0060600 Salix brachista
Sabra08G0043700 Salix brachista
Sabra10G0153500 Salix brachista
SalBow6G2666 Salvia bowleyana
SalBow6G3650 Salvia bowleyana
SalBow6G6355 Salvia bowleyana
SalBow7G0049 Salvia bowleyana
SalBow7G1653 Salvia bowleyana
Sc11g0007700 Simmondsia chinensis
Sc15g0007500 Simmondsia chinensis
Sed0000585 Sechium edule
Sed0009848 Sechium edule
Sed0027798 Sechium edule
SEGI_08470 Sequoiadendron giganteum
SEGI_30668 Sequoiadendron giganteum
SGA_v2.0_scaffold52G18910 Striga asiatica
SGA_v2.0_scaffold76G25144 Striga asiatica
SMO143G0149 Selaginella moellendorffii
SMO228G0098 Selaginella moellendorffii
Solyc04g058180.4 Solanum lycopersicum
Solyc05g052970.4 Solanum lycopersicum
Sopen04g026080 Solanum pennellii
Sopen05g031490 Solanum pennellii
Sp4g22020 Schrenkiella parvula
Sp5g32430 Schrenkiella parvula
Sp6g36860 Schrenkiella parvula
TAR369G0098 Trochodendron aralioides
TAR376G0139 Trochodendron aralioides
TAR623G1462 Trochodendron aralioides
THA.LOC104808601 Tarenaya hassleriana
THA.LOC104810045 Tarenaya hassleriana
THA.LOC104813685 Tarenaya hassleriana
THA.LOC104823130 Tarenaya hassleriana
Thecc.08G134200 Theobroma cacao
Thecc.10G039400 Theobroma cacao
Thhalv10012860m.g Eutrema salsugineum
Thhalv10016330m.g Eutrema salsugineum
Thhalv10018241m.g Eutrema salsugineum
TPR.G10329 Trifolium pratense
TPR.G25825 Trifolium pratense
TWI15G0400 Tripterygium wilfordii
TWI32G1201 Tripterygium wilfordii
TWI38G2263 Tripterygium wilfordii
unitig_61.g26161 Utricularia gibba
VMungo0647G1621 Vigna mungo
VMungo0647G2432 Vigna mungo
VMungo1383G2154 Vigna mungo
Zm00001eb148100 Zea mays
Zm00001eb367830 Zea mays

User provided reference genes

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