Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p02100 Brassica napus
A03p64620 Brassica napus
A08p22410 Brassica napus
A09p12000 Brassica napus
Aa31LG6G13610 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4559 Anthoceros agrestis
Actinidia12107 Actinidia chinensis
Actinidia17826 Actinidia chinensis
Actinidia29838 Actinidia chinensis
Actinidia38022 Actinidia chinensis
Ah.01g019610 Amaranthus hybridus
AL3G51960 Arabidopsis lyrata
AL7G14200 Arabidopsis lyrata
Aqoxy3G00860 Aquilegia oxysepala
Aqoxy5G01695 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.G3NDLZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.L08NWK Arachis hypogaea
AT2G18600 Arabidopsis thaliana
AT4G36800 Arabidopsis thaliana
ATR0733G092 Amborella trichopoda
Atru.chr3.514 Acer truncatum
Atru.chr5.2950 Acer truncatum
AUR62033637 Chenopodium quinoa
AUR62034705 Chenopodium quinoa
AUR62034706 Chenopodium quinoa
AUR62043544 Chenopodium quinoa
AUR62043550 Chenopodium quinoa
BcaB03g12370 Brassica carinata
BcaC01g00439 Brassica carinata
BcaC04g22895 Brassica carinata
BcaNung03530 Brassica carinata
BcaNung03935 Brassica carinata
BcaNung04282 Brassica carinata
BolC3t20237H Brassica oleracea
BolC9t54310H Brassica oleracea
BraA01t00199Z Brassica rapa
BraA08t34198Z Brassica rapa
BraA09t36843Z Brassica rapa
C01p02280 Brassica napus
C03p79850 Brassica napus
C07p61970 Brassica napus
C09p14130 Brassica napus
CAN.G1002.17 Capsicum annuum
CAN.G1126.21 Capsicum annuum
CAN.G181.16 Capsicum annuum
CAN.G181.21 Capsicum annuum
CAN.G358.131 Capsicum annuum
CANSAT01G1733 Cannabis sativa
CARHR109200 Cardamine hirsuta
CARHR245160 Cardamine hirsuta
Carub.0003s3287 Capsella rubella
Carub.0007s0352 Capsella rubella
Ca_24833_v3 Cicer arietinum L.
CBR_g38273 Chara braunii
Cc06_g19960 Coffea canephora
Cc10_g03300 Coffea canephora
CDE04G3632 Ceratophyllum demersum
Cfa004268 Carpinus fangiana
Cfa004977 Carpinus fangiana
Cfa025638 Carpinus fangiana
Ciclev10002620m.g Citrus clementina
Ciclev10003929m.g Citrus clementina
Ciclev10027386m.g Citrus clementina
Ciclev10029365m.g Citrus clementina
CiPaw.01G033700 Carya illinoinensis
CiPaw.05G061400 Carya illinoinensis
CiPaw.06G137700 Carya illinoinensis
ClCG01G016190 Citrullus lanatus
ClCG02G005260 Citrullus lanatus
COL.COLO4_22138 Corchorus olitorius
COL.COLO4_32454 Corchorus olitorius
Cpa.g.sc158.15 Carica papaya
Cpa.g.sc62.113 Carica papaya
Cre08.g370850 Chlamydomonas reinhardtii
CsaV3_6G042460 Cucumis sativus L.
CsaV3_7G023260 Cucumis sativus L.
CSS0010786 Camellia sinensis var. sinensis
CSS0026151 Camellia sinensis var. sinensis
CSS0045129 Camellia sinensis var. sinensis
DCAR_012750 Daucus carota
DCAR_019508 Daucus carota
DCAR_020959 Daucus carota
DCAR_020960 Daucus carota
Dinv23552 Davidia involucrata
Dinv39386 Davidia involucrata
Dinv39948 Davidia involucrata
Dinv42089 Davidia involucrata
Duzib052G1031 Durio zibethinus
Duzib132G0916 Durio zibethinus
Duzib147G0867 Durio zibethinus
Duzib248G1374 Durio zibethinus
Duzib264G0069 Durio zibethinus
ECA232G2410 Erigeron canadensis
ECA238G4497 Erigeron canadensis
EL10Ac9g21753 Beta vulgaris
Eucgr.H01237 Eucalyptus grandis
Eucgr.I01247 Eucalyptus grandis
FAN15G1384 Fragaria x ananassa
FAN15G3072 Fragaria x ananassa
FAN19G0268 Fragaria x ananassa
FAN20G1282 Fragaria x ananassa
FAN20G3086 Fragaria x ananassa
FAN23G2132 Fragaria x ananassa
FAN24G1970 Fragaria x ananassa
FAN26G1211 Fragaria x ananassa
FAN27G1451 Fragaria x ananassa
FAN28G1351 Fragaria x ananassa
FAN28G1531 Fragaria x ananassa
FvH4_1g14060 Fragaria vesca
FvH4_2g08220 Fragaria vesca
FvH4_2g40180 Fragaria vesca
FvH4_2g40311 Fragaria vesca
Glyma.01G178200 Glycine max
Glyma.02G058950 Glycine max
Glyma.11G064000 Glycine max
Gohir.A02G163566 Gossypium hirsutum
Gohir.A11G044200 Gossypium hirsutum
Gohir.A11G186700 Gossypium hirsutum
Gohir.A12G066000 Gossypium hirsutum
Gohir.D11G047700 Gossypium hirsutum
Gohir.D11G193200 Gossypium hirsutum
Gohir.D12G066400 Gossypium hirsutum
Gorai.007G051200 Gossypium raimondii
Gorai.007G206300 Gossypium raimondii
Gorai.008G069700 Gossypium raimondii
GSVIVG01009655001 Vitis vinifera
GSVIVG01019018001 Vitis vinifera
GSVIVG01031919001 Vitis vinifera
HanXRQChr02g0038771 Helianthus annuus
HanXRQChr09g0268491 Helianthus annuus
HanXRQChr14g0440941 Helianthus annuus
HanXRQChr16g0508541 Helianthus annuus
Haze_02414 Corylus avellana
Haze_15133 Corylus avellana
Haze_26147 Corylus avellana
Hma1.2p1_0066F.1_g036700 Hydrangea macrophylla
Hund29070 Selenicereus undatus
Hund29073 Selenicereus undatus
Lalb_Chr05g0212991 Lupinus albus
Lalb_Chr05g0227681 Lupinus albus
Lalb_Chr09g0333621 Lupinus albus
Lj2g0017765 Lotus japonicus
Lj4A195T61 Lonicera japonica
Lj4C783T6 Lonicera japonica
Lj5A200T62 Lonicera japonica
Lsat_1_v5_gn_2_79740 Lactuca sativa
Lsat_1_v5_gn_4_122061 Lactuca sativa
Manes.12G098200 Manihot esculenta
Manes.13G136300 Manihot esculenta
Mapoly0122s0005 Marchantia polymorpha
MBI16_g28234_MAGBIO Magnolia biondii
MCO15G509 Micromonas commoda
MD00G1139500 Malus domestica
MD00G1139700 Malus domestica
MD00G1184500 Malus domestica
MD00G1192300 Malus domestica
MD00G1203300 Malus domestica
MD00G1205100 Malus domestica
MD00G1205500 Malus domestica
MD01G1124700 Malus domestica
MD02G1154200 Malus domestica
MD02G1154300 Malus domestica
MD08G1035500 Malus domestica
MD15G1268600 Malus domestica
MD15G1268700 Malus domestica
Medtr5g019480 Medicago truncatula
MELO3C007489.2 Cucumis melo
MELO3C012564.2 Cucumis melo
Migut.C00689 Erythranthe guttata
MSTRG.1297 Avicennia marina
MSTRG.25146 Avicennia marina
Nitab4.5_0000110g0290 Nicotiana tabacum
Nitab4.5_0000453g0040 Nicotiana tabacum
Nitab4.5_0002940g0010 Nicotiana tabacum
Nitab4.5_0003194g0070 Nicotiana tabacum
Nitab4.5_0003941g0020 Nicotiana tabacum
Nitab4.5_0004118g0060 Nicotiana tabacum
Nitab4.5_0005314g0030 Nicotiana tabacum
Nitab4.5_0007287g0080 Nicotiana tabacum
Nn1g05089 Nelumbo nucifera
Nn5g29509 Nelumbo nucifera
Oeu005370.1 Olea europaea
Oeu019078.1 Olea europaea
Oeu035113.1 Olea europaea
Oeu036770.1 Olea europaea
Os08g0374100 Oryza sativa ssp. japonica
Os09g0321900 Oryza sativa ssp. japonica
Os10g0190000 Oryza sativa ssp. japonica
Peaxi162Scf00057g00072 Petunia axillaris
Peaxi162Scf00064g00328 Petunia axillaris
Peaxi162Scf01327g00022 Petunia axillaris
Peaxi162Scf02108g00011 Petunia axillaris
PGR042G3529 Punica granatum
PGSC0003DMG400012657 Solanum tuberosum
PGSC0003DMG400015423 Solanum tuberosum
PGSC0003DMG400020568 Solanum tuberosum
PGSC0003DMG400027848 Solanum tuberosum
Phvul.002G026500 Phaseolus vulgaris
Phvul.003G251600 Phaseolus vulgaris
Potri.005G126500 Populus trichocarpa
Potri.007G030900 Populus trichocarpa
Potri.009G113045 Populus trichocarpa
Potri.014G041532 Populus trichocarpa
Potri.T125904 Populus trichocarpa
Pp3c11_9670 Physcomitrium patens
Pp3c13_8210 Physcomitrium patens
Pp3c1_4140 Physcomitrium patens
Pp3c26_11990 Physcomitrium patens
Pp3c4_29910 Physcomitrium patens
PRCOL_00003297 Prasinoderma coloniale
Prupe.1G383000 Prunus persica
Prupe.7G148800 Prunus persica
Prupe.8G102500 Prunus persica
Psat2g162160 Pisum sativum
PSO170G0529 Papaver somniferum
PSO357G0350 Papaver somniferum
PSO541G1037 Papaver somniferum
PSO675G5328 Papaver somniferum
PSO700G0310 Papaver somniferum
PSO832G0760 Papaver somniferum
QL06p045000 Quercus lobata
QL11p042576 Quercus lobata
QL11p042742 Quercus lobata
RcHm_v2.0_Chr2g0102661 Rosa chinensis
RcHm_v2.0_Chr6g0263031 Rosa chinensis
RcHm_v2.0_Chr6g0300421 Rosa chinensis
RcHm_v2.0_Chr6g0300551 Rosa chinensis
Rhsim07G0216000 Rhododendron simsii
Rhsim07G0236200 Rhododendron simsii
Rhsim11G0173600 Rhododendron simsii
Sabra05G0104000 Salix brachista
Sabra07G0026700 Salix brachista
Sabra09G0086300 Salix brachista
SalBow7G2137 Salvia bowleyana
Sc08g0000350 Simmondsia chinensis
Sc18g0004650 Simmondsia chinensis
Sed0001581 Sechium edule
Sed0005151 Sechium edule
Sed0021226 Sechium edule
SEGI_15652 Sequoiadendron giganteum
SEGI_16467 Sequoiadendron giganteum
SGA_v2.0_scaffold24G10263 Striga asiatica
SGA_v2.0_scaffold24G10265 Striga asiatica
SGA_v2.0_scaffold48G18051 Striga asiatica
SMO169G0237 Selaginella moellendorffii
SMO270G0061 Selaginella moellendorffii
Solyc02g085690.4 Solanum lycopersicum
Solyc04g079970.3 Solanum lycopersicum
Solyc06g007493.1 Solanum lycopersicum
Solyc06g007497.1 Solanum lycopersicum
Solyc12g089030.2 Solanum lycopersicum
Sopen02g030380 Solanum pennellii
Sopen04g033550 Solanum pennellii
Sopen12g030930 Solanum pennellii
Sp3g32100 Schrenkiella parvula
Sp7g34460 Schrenkiella parvula
TAR381G1641 Trochodendron aralioides
TAR625G1322 Trochodendron aralioides
TAR628G0354 Trochodendron aralioides
THA.LOC104804226 Tarenaya hassleriana
THA.LOC104807554 Tarenaya hassleriana
THA.LOC104819806 Tarenaya hassleriana
THA.LOC104824939 Tarenaya hassleriana
Thecc.01G041500 Theobroma cacao
Thecc.02G122400 Theobroma cacao
Thhalv10022872m.g Eutrema salsugineum
Thhalv10027340m.g Eutrema salsugineum
TPR.G23218 Trifolium pratense
TWI09G1187 Tripterygium wilfordii
TWI53G1001 Tripterygium wilfordii
TWI75G1567 Tripterygium wilfordii
TWI79G0912 Tripterygium wilfordii
unitig_578.g16721 Utricularia gibba
unitig_85.g27234 Utricularia gibba
vmacro02135 Vaccinium macrocarpon
vmacro04508 Vaccinium macrocarpon
VMungo0251G1967 Vigna mungo
VMungo1215G0037 Vigna mungo
Zm00001eb226900 Zea mays
Zm00001eb272930 Zea mays

User provided reference genes

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