Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p01720 Brassica napus
A01p04220 Brassica napus
A04p17780 Brassica napus
A07p16680 Brassica napus
A09p10700 Brassica napus
Aa31LG1G15810 Aethionema arabicum
Aa31LG2G16730 Aethionema arabicum
Aa31LG6G14120 Aethionema arabicum
Aa31LG7G13680 Aethionema arabicum
Actinidia00413 Actinidia chinensis
Actinidia12020 Actinidia chinensis
Actinidia36464 Actinidia chinensis
Ah.01g018210 Amaranthus hybridus
Ah.03g146010 Amaranthus hybridus
AL3G47050 Arabidopsis lyrata
AL4G13190 Arabidopsis lyrata
AL7G13590 Arabidopsis lyrata
AL7G17090 Arabidopsis lyrata
AL8G44050 Arabidopsis lyrata
Aqoxy5G01147 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.36NELZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.40ERU4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HLYC1U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LZF6S4 Arachis hypogaea
AT2G15300 Arabidopsis thaliana
AT2G23300 Arabidopsis thaliana
AT4G34220 Arabidopsis thaliana
AT4G37250 Arabidopsis thaliana
AT5G67280 Arabidopsis thaliana
ATR0691G307 Amborella trichopoda
Atru.chr3.252 Acer truncatum
Atru.chr3.253 Acer truncatum
Atru.chr5.2586 Acer truncatum
AUR62003935 Chenopodium quinoa
AUR62010301 Chenopodium quinoa
AUR62038253 Chenopodium quinoa
AUR62039085 Chenopodium quinoa
BcaB02g09951 Brassica carinata
BcaB06g27888 Brassica carinata
BcaB07g31792 Brassica carinata
BcaB07g31793 Brassica carinata
BcaC02g08557 Brassica carinata
BcaC04g23050 Brassica carinata
BcaC06g34811 Brassica carinata
BcaNung02531 Brassica carinata
BcaNung03805 Brassica carinata
BolC1t00181H Brassica oleracea
BolC1t00444H Brassica oleracea
BolC4t26827H Brassica oleracea
BolC7t42961H Brassica oleracea
BolC9t54159H Brassica oleracea
BraA01t00163Z Brassica rapa
BraA01t00411Z Brassica rapa
BraA04t17398Z Brassica rapa
BraA07t29392Z Brassica rapa
BraA09t36715Z Brassica rapa
C01p01890 Brassica napus
C01p04600 Brassica napus
C04p52610 Brassica napus
C07p24400 Brassica napus
C09p12700 Brassica napus
CAN.G1231.11 Capsicum annuum
CAN.G370.11 Capsicum annuum
CAN.G47.11 Capsicum annuum
CAN.G571.8 Capsicum annuum
CANSAT25G0826 Cannabis sativa
CANSAT25G2131 Cannabis sativa
CANSAT25G3117 Cannabis sativa
CANSAT25G3152 Cannabis sativa
CARHR105670 Cardamine hirsuta
CARHR242570 Cardamine hirsuta
CARHR245640 Cardamine hirsuta
CARHR280340 Cardamine hirsuta
CARHR292940 Cardamine hirsuta
Carub.0003s2913 Capsella rubella
Carub.0004s0251 Capsella rubella
Carub.0007s0304 Capsella rubella
Carub.0007s0616 Capsella rubella
Carub.0008s2722 Capsella rubella
Ca_11079_v3 Cicer arietinum L.
Ca_22125_v3 Cicer arietinum L.
Cc02_g19220 Coffea canephora
Cc07_g06440 Coffea canephora
CDE04G3198 Ceratophyllum demersum
CDE07G1074 Ceratophyllum demersum
Cfa004060 Carpinus fangiana
Cfa004573 Carpinus fangiana
Ciclev10024962m.g Citrus clementina
Ciclev10027853m.g Citrus clementina
CiPaw.01G013000 Carya illinoinensis
CiPaw.02G006100 Carya illinoinensis
CiPaw.05G011100 Carya illinoinensis
CiPaw.06G169700 Carya illinoinensis
ClCG02G008070 Citrullus lanatus
ClCG05G010260 Citrullus lanatus
COL.COLO4_11481 Corchorus olitorius
COL.COLO4_32600 Corchorus olitorius
Cpa.g.sc106.88 Carica papaya
Cpa.g.sc6.100 Carica papaya
CsaV3_2G035560 Cucumis sativus L.
CsaV3_3G018230 Cucumis sativus L.
CSS0008473 Camellia sinensis var. sinensis
CSS0047658 Camellia sinensis var. sinensis
DCAR_010854 Daucus carota
DCAR_021475 Daucus carota
DCAR_021991 Daucus carota
DCAR_025758 Daucus carota
Dinv15760 Davidia involucrata
Dinv26865 Davidia involucrata
Dinv30032 Davidia involucrata
Dinv42189 Davidia involucrata
Duzib052G1210 Durio zibethinus
Duzib132G0155 Durio zibethinus
Duzib147G1429 Durio zibethinus
Duzib187G1354 Durio zibethinus
Duzib264G0105 Durio zibethinus
ECA232G0848 Erigeron canadensis
ECA234G2933 Erigeron canadensis
ECA236G1319 Erigeron canadensis
EL10Ac6g15691 Beta vulgaris
EL10Ac9g22282 Beta vulgaris
Eucgr.G01353 Eucalyptus grandis
Eucgr.H03210 Eucalyptus grandis
Eucgr.I00762 Eucalyptus grandis
Eucgr.I00788 Eucalyptus grandis
FAN15G3642 Fragaria x ananassa
FAN19G0067 Fragaria x ananassa
FAN20G2369 Fragaria x ananassa
FAN23G2099 Fragaria x ananassa
FAN24G3420 Fragaria x ananassa
FAN26G3354 Fragaria x ananassa
FAN27G0772 Fragaria x ananassa
FAN28G0809 Fragaria x ananassa
FAN28G1016 Fragaria x ananassa
FvH4_1g16750 Fragaria vesca
FvH4_2g05270 Fragaria vesca
Glyma.05G097400 Glycine max
Glyma.10G110100 Glycine max
Glyma.10G261600 Glycine max
Glyma.17G167600 Glycine max
Glyma.20G129200 Glycine max
Gohir.A02G155000 Gossypium hirsutum
Gohir.A12G022300 Gossypium hirsutum
Gohir.A12G075100 Gossypium hirsutum
Gohir.A13G043600 Gossypium hirsutum
Gohir.D03G025700 Gossypium hirsutum
Gohir.D12G022700 Gossypium hirsutum
Gohir.D12G071800 Gossypium hirsutum
Gohir.D13G042100 Gossypium hirsutum
Gorai.003G027300 Gossypium raimondii
Gorai.008G023200 Gossypium raimondii
Gorai.008G078600 Gossypium raimondii
Gorai.013G047000 Gossypium raimondii
GSVIVG01000222001 Vitis vinifera
GSVIVG01003162001 Vitis vinifera
HanXRQChr10g0301621 Helianthus annuus
HanXRQChr12g0381791 Helianthus annuus
HanXRQChr15g0491721 Helianthus annuus
HanXRQChr16g0510121 Helianthus annuus
HanXRQChr16g0510131 Helianthus annuus
HanXRQChr16g0530011 Helianthus annuus
Haze_10165 Corylus avellana
Haze_15352 Corylus avellana
Hma1.2p1_0239F.1_g100060 Hydrangea macrophylla
HPP92_004766 Vanilla planifolia
Hund00147 Selenicereus undatus
Hund06321 Selenicereus undatus
Hund16365 Selenicereus undatus
Lalb_Chr05g0226331 Lupinus albus
Lalb_Chr21g0308371 Lupinus albus
Lj4A156G47 Lonicera japonica
Lj4A156T48 Lonicera japonica
Lj4g0007656 Lotus japonicus
Lj5A213T91 Lonicera japonica
Lj5g0005352 Lotus japonicus
Lj7A76T81 Lonicera japonica
Lsat_1_v5_gn_3_88541 Lactuca sativa
Lsat_1_v5_gn_4_163920 Lactuca sativa
Lsat_1_v5_gn_5_114821 Lactuca sativa
Lsat_1_v5_gn_7_86401 Lactuca sativa
Manes.07G072100 Manihot esculenta
Manes.07G072338 Manihot esculenta
Manes.10G073600 Manihot esculenta
Manes.12G108300 Manihot esculenta
Manes.13G118500 Manihot esculenta
MD02G1178600 Malus domestica
MD05G1088500 Malus domestica
MD10G1096400 Malus domestica
MD15G1288500 Malus domestica
Medtr1g107460 Medicago truncatula
Medtr4g094958 Medicago truncatula
MELO3C019544.2 Cucumis melo
MELO3C024796.2 Cucumis melo
Migut.B00384 Erythranthe guttata
Migut.H00395 Erythranthe guttata
Migut.L00182 Erythranthe guttata
MSTRG.20183 Avicennia marina
MSTRG.23715 Avicennia marina
Nitab4.5_0001039g0070 Nicotiana tabacum
Nitab4.5_0001373g0040 Nicotiana tabacum
Nitab4.5_0002815g0060 Nicotiana tabacum
Nitab4.5_0005392g0060 Nicotiana tabacum
Nn5g30417 Nelumbo nucifera
Nn8g40922 Nelumbo nucifera
Nn8g41160 Nelumbo nucifera
Oeu009921.1 Olea europaea
Oeu010394.1 Olea europaea
Oeu013254.2 Olea europaea
Oeu018598.1 Olea europaea
Os06g0638500 Oryza sativa ssp. japonica
Os09g0110100 Oryza sativa ssp. japonica
Peaxi162Scf00016g02244 Petunia axillaris
Peaxi162Scf00549g00049 Petunia axillaris
PGR004G1171 Punica granatum
PGR042G2641 Punica granatum
PGSC0003DMG400024954 Solanum tuberosum
PGSC0003DMG400025771 Solanum tuberosum
PGSC0003DMG400025864 Solanum tuberosum
Phvul.003G240400 Phaseolus vulgaris
Phvul.007G040400 Phaseolus vulgaris
Potri.001G300700 Populus trichocarpa
Potri.005G142300 Populus trichocarpa
Potri.007G048800 Populus trichocarpa
Prupe.6G229200 Prunus persica
Prupe.8G134500 Prunus persica
Psat4g084280 Pisum sativum
Psat6g219320 Pisum sativum
PSO170G3631 Papaver somniferum
PSO210G5798 Papaver somniferum
QL06p040223 Quercus lobata
QL11p033928 Quercus lobata
RcHm_v2.0_Chr2g0106651 Rosa chinensis
RcHm_v2.0_Chr6g0255401 Rosa chinensis
Rhsim10G0112800 Rhododendron simsii
Rhsim11G0160400 Rhododendron simsii
Sabra05G0113500 Salix brachista
Sabra07G0043500 Salix brachista
Sabra16G0188800 Salix brachista
SalBow5G0300 Salvia bowleyana
SalBow5G0832 Salvia bowleyana
SalBow6G6634 Salvia bowleyana
Sc08g0001420 Simmondsia chinensis
Sc16g0005240 Simmondsia chinensis
Sed0025218 Sechium edule
Sed0026297 Sechium edule
Sed0027521 Sechium edule
SEGI_40505 Sequoiadendron giganteum
SGA_v2.0_scaffold15G07364 Striga asiatica
SGA_v2.0_scaffold225G43077 Striga asiatica
Solyc01g107650.3 Solanum lycopersicum
Solyc02g092940.3 Solanum lycopersicum
Sopen01g049840 Solanum pennellii
Sopen02g037500 Solanum pennellii
Sp2g29380 Schrenkiella parvula
Sp3g28580 Schrenkiella parvula
Sp4g02300 Schrenkiella parvula
Sp7g31990 Schrenkiella parvula
Sp7g34910 Schrenkiella parvula
TAR376G0852 Trochodendron aralioides
TAR628G0999 Trochodendron aralioides
THA.LOC104819245 Tarenaya hassleriana
THA.LOC104827437 Tarenaya hassleriana
Thecc.01G063200 Theobroma cacao
Thecc.02G107300 Theobroma cacao
Thhalv10000055m.g Eutrema salsugineum
Thhalv10003700m.g Eutrema salsugineum
Thhalv10022577m.g Eutrema salsugineum
Thhalv10024484m.g Eutrema salsugineum
Thhalv10024498m.g Eutrema salsugineum
TPR.G28430 Trifolium pratense
TPR.G30559 Trifolium pratense
TWI31G0157 Tripterygium wilfordii
TWI53G0154 Tripterygium wilfordii
TWI73G0569 Tripterygium wilfordii
vmacro02007 Vaccinium macrocarpon
vmacro05255 Vaccinium macrocarpon
VMungo0251G0046 Vigna mungo
VMungo0647G2233 Vigna mungo
VMungo0720G2605 Vigna mungo
Zm00001eb095660 Zea mays
Zm00001eb275460 Zea mays
Zm00001eb307320 Zea mays
Zm00001eb337960 Zea mays
Zm00001eb387310 Zea mays

User provided reference genes

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