Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p44020 Brassica napus
A06p32480 Brassica napus
A10p27010 Brassica napus
Aa31LG1G16420 Aethionema arabicum
Actinidia10262 Actinidia chinensis
Actinidia11926 Actinidia chinensis
Actinidia19259 Actinidia chinensis
Actinidia19604 Actinidia chinensis
Actinidia29648 Actinidia chinensis
Ah.11g039540 Amaranthus hybridus
AL6G21100 Arabidopsis lyrata
AL8G43230 Arabidopsis lyrata
Aqoxy6G00626 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.7G8F9G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D11Z9R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EG7BHI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GL41VM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H3ZHUW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I192KR Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NX4WQG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PC0G1F Arachis hypogaea
AT5G10570 Arabidopsis thaliana
AT5G65640 Arabidopsis thaliana
ATR0144G004 Amborella trichopoda
Atru.chr13.940 Acer truncatum
Atru.chr3.1146 Acer truncatum
Atru.chr3.1165 Acer truncatum
AUR62035415 Chenopodium quinoa
AUR62035700 Chenopodium quinoa
BcaB08g37092 Brassica carinata
BcaC01g02802 Brassica carinata
BcaC01g02849 Brassica carinata
BcaC03g18345 Brassica carinata
BolC2t12489H Brassica oleracea
BolC3t18274H Brassica oleracea
BolC9t59451H Brassica oleracea
BraA02t09325Z Brassica rapa
BraA06t26172Z Brassica rapa
BraA10t44752Z Brassica rapa
C02p64240 Brassica napus
C03p60110 Brassica napus
C09p66700 Brassica napus
CAN.G1061.22 Capsicum annuum
CAN.G1541.1 Capsicum annuum
CAN.G215.5 Capsicum annuum
CAN.G723.26 Capsicum annuum
CANSAT01G0705 Cannabis sativa
CARHR202720 Cardamine hirsuta
CARHR202730 Cardamine hirsuta
CARHR279610 Cardamine hirsuta
Carub.0006s0905 Capsella rubella
Carub.0008s2652 Capsella rubella
Ca_15545_v3 Cicer arietinum L.
Ca_25208_v3 Cicer arietinum L.
Ca_29993_v3 Cicer arietinum L.
Cc07_g07810 Coffea canephora
Cc10_g08200 Coffea canephora
CDE01G0042 Ceratophyllum demersum
CDE02G0492 Ceratophyllum demersum
CDE04G2215 Ceratophyllum demersum
CDE07G2019 Ceratophyllum demersum
Cfa013835 Carpinus fangiana
Ciclev10001683m.g Citrus clementina
Ciclev10025967m.g Citrus clementina
CiPaw.07G042100 Carya illinoinensis
CiPaw.07G161300 Carya illinoinensis
CiPaw.08G058100 Carya illinoinensis
CiPaw.08G146600 Carya illinoinensis
ClCG01G018160 Citrullus lanatus
ClCG08G011880 Citrullus lanatus
ClCG11G014830 Citrullus lanatus
COL.COLO4_11675 Corchorus olitorius
COL.COLO4_35326 Corchorus olitorius
Cpa.g.sc129.19 Carica papaya
Cpa.g.sc177.1 Carica papaya
CsaV3_2G030500 Cucumis sativus L.
CsaV3_3G048260 Cucumis sativus L.
CsaV3_6G044730 Cucumis sativus L.
CSS0014087 Camellia sinensis var. sinensis
CSS0017024 Camellia sinensis var. sinensis
CSS0029548 Camellia sinensis var. sinensis
CSS0036285 Camellia sinensis var. sinensis
CSS0044169 Camellia sinensis var. sinensis
CSS0046778 Camellia sinensis var. sinensis
DCAR_009550 Daucus carota
DCAR_010759 Daucus carota
DCAR_019332 Daucus carota
DCAR_025855 Daucus carota
Dinv22015 Davidia involucrata
Dinv26999 Davidia involucrata
Dinv36980 Davidia involucrata
Dinv44888 Davidia involucrata
Duzib041G0569 Durio zibethinus
Duzib093G0803 Durio zibethinus
Duzib116G0307 Durio zibethinus
Duzib147G0608 Durio zibethinus
Duzib187G1511 Durio zibethinus
ECA232G1802 Erigeron canadensis
ECA246G3381 Erigeron canadensis
EL10Ac1g02240 Beta vulgaris
Eucgr.F00459 Eucalyptus grandis
Eucgr.F02171 Eucalyptus grandis
Eucgr.I00608 Eucalyptus grandis
FAN04G2295 Fragaria x ananassa
FAN08G2586 Fragaria x ananassa
FAN18G1668 Fragaria x ananassa
FAN19G0859 Fragaria x ananassa
FAN23G3023 Fragaria x ananassa
FAN26G1577 Fragaria x ananassa
FAN28G1317 Fragaria x ananassa
FvH4_1g18930 Fragaria vesca
FvH4_5g33810 Fragaria vesca
Glyma.01G019700 Glycine max
Glyma.02G217800 Glycine max
Glyma.02G252400 Glycine max
Glyma.04G090100 Glycine max
Glyma.06G092000 Glycine max
Glyma.08G274200 Glycine max
Glyma.09G203000 Glycine max
Glyma.14G185100 Glycine max
Gohir.A01G125500 Gossypium hirsutum
Gohir.A02G146300 Gossypium hirsutum
Gohir.A05G216100 Gossypium hirsutum
Gohir.A06G029800 Gossypium hirsutum
Gohir.A11G209200 Gossypium hirsutum
Gohir.D01G113100 Gossypium hirsutum
Gohir.D03G034200 Gossypium hirsutum
Gohir.D05G219200 Gossypium hirsutum
Gohir.D06G028900 Gossypium hirsutum
Gohir.D11G214200 Gossypium hirsutum
Gorai.002G137900 Gossypium raimondii
Gorai.003G035900 Gossypium raimondii
Gorai.007G229900 Gossypium raimondii
Gorai.009G226200 Gossypium raimondii
Gorai.010G031800 Gossypium raimondii
GSVIVG01004405001 Vitis vinifera
GSVIVG01006519001 Vitis vinifera
GSVIVG01008305001 Vitis vinifera
GSVIVG01009234001 Vitis vinifera
GSVIVG01023755001 Vitis vinifera
HanXRQChr09g0262941 Helianthus annuus
HanXRQChr10g0277701 Helianthus annuus
HanXRQChr15g0474041 Helianthus annuus
Haze_03936 Corylus avellana
Haze_22507 Corylus avellana
Hma1.2p1_0125F.1_g058520 Hydrangea macrophylla
HPP92_014388 Vanilla planifolia
HPP92_025433 Vanilla planifolia
Hund05224 Selenicereus undatus
Lalb_Chr05g0216191 Lupinus albus
Lalb_Chr08g0242661 Lupinus albus
Lalb_Chr09g0325741 Lupinus albus
Lalb_Chr11g0064771 Lupinus albus
Lalb_Chr11g0070021 Lupinus albus
Lalb_Chr16g0381461 Lupinus albus
Lalb_Chr23g0269881 Lupinus albus
Lj1g0007435 Lotus japonicus
Lj1g0016448 Lotus japonicus
Lj2C429T14 Lonicera japonica
Lj2g0016079 Lotus japonicus
Lj4A83G69 Lonicera japonica
LjContig00408g0019640 Lotus japonicus
Lsat_1_v5_gn_3_83561 Lactuca sativa
Lsat_1_v5_gn_4_157941 Lactuca sativa
Lsat_1_v5_gn_6_107660 Lactuca sativa
Manes.05G187300 Manihot esculenta
Manes.12G121100 Manihot esculenta
Manes.13G104400 Manihot esculenta
Manes.18G054675 Manihot esculenta
MBI16_g24166_MAGBIO Magnolia biondii
MBI16_g26240_MAGBIO Magnolia biondii
MBI16_g31388_MAGBIO Magnolia biondii
MBI16_g31812_MAGBIO Magnolia biondii
MD01G1045500 Malus domestica
MD08G1207700 Malus domestica
MD15G1306400 Malus domestica
MD15G1392100 Malus domestica
Medtr3g111290 Medicago truncatula
Medtr5g030770 Medicago truncatula
Medtr7g065690 Medicago truncatula
Medtr7g076840 Medicago truncatula
MELO3C003492.2 Cucumis melo
MELO3C007694.2 Cucumis melo
MELO3C011110.2 Cucumis melo
Migut.H00297 Erythranthe guttata
Migut.N02832 Erythranthe guttata
MSTRG.15330 Avicennia marina
MSTRG.22186 Avicennia marina
MSTRG.23627 Avicennia marina
MSTRG.24419 Avicennia marina
MSTRG.2789 Avicennia marina
Nitab4.5_0000036g0390 Nicotiana tabacum
Nitab4.5_0000291g0020 Nicotiana tabacum
Nitab4.5_0000354g0040 Nicotiana tabacum
Nitab4.5_0000377g0210 Nicotiana tabacum
Nitab4.5_0000576g0010 Nicotiana tabacum
Nitab4.5_0000885g0150 Nicotiana tabacum
Nitab4.5_0002135g0080 Nicotiana tabacum
Nitab4.5_0003464g0030 Nicotiana tabacum
Nn1g05765 Nelumbo nucifera
Nn5g29764 Nelumbo nucifera
Oeu007432.1 Olea europaea
Oeu030823.1 Olea europaea
Oeu035371.1 Olea europaea
Oeu059818.1 Olea europaea
Os03g0135700 Oryza sativa ssp. japonica
Os10g0544200 Oryza sativa ssp. japonica
Peaxi162Scf00160g00836 Petunia axillaris
Peaxi162Scf00943g00310 Petunia axillaris
Peaxi162Scf01190g00006 Petunia axillaris
Peaxi162Scf01209g00011 Petunia axillaris
PGR031G0281 Punica granatum
PGR031G2195 Punica granatum
PGR083G2755 Punica granatum
PGSC0003DMG400002056 Solanum tuberosum
PGSC0003DMG400006394 Solanum tuberosum
PGSC0003DMG400010388 Solanum tuberosum
PGSC0003DMG400030616 Solanum tuberosum
Phvul.002G142800 Phaseolus vulgaris
Phvul.003G286400 Phaseolus vulgaris
Phvul.008G184800 Phaseolus vulgaris
Phvul.009G145800 Phaseolus vulgaris
Potri.002G108400 Populus trichocarpa
Prupe.1G540400 Prunus persica
Prupe.6G210200 Prunus persica
Psat2g134920 Pisum sativum
Psat5g018480 Pisum sativum
PSO210G6751 Papaver somniferum
PSO675G5216 Papaver somniferum
PSO675G5238 Papaver somniferum
PSO675G7453 Papaver somniferum
PSO761G0651 Papaver somniferum
QL06p037492 Quercus lobata
QL12p040065 Quercus lobata
RcHm_v2.0_Chr2g0109941 Rosa chinensis
RcHm_v2.0_Chr7g0233161 Rosa chinensis
Rhsim06G0069000 Rhododendron simsii
Rhsim10G0081300 Rhododendron simsii
SalBow2G1932 Salvia bowleyana
SalBow2G2913 Salvia bowleyana
SalBow3G1622 Salvia bowleyana
SalBow3G4563 Salvia bowleyana
SalBow7G3337 Salvia bowleyana
Sc15g0005140 Simmondsia chinensis
Sed0009400 Sechium edule
Sed0013534 Sechium edule
Sed0017550 Sechium edule
Sed0024299 Sechium edule
Sed0025453 Sechium edule
SEGI_13926 Sequoiadendron giganteum
SGA_v2.0_scaffold149G36520 Striga asiatica
SGA_v2.0_scaffold241G44202 Striga asiatica
SGA_v2.0_scaffold28G11877 Striga asiatica
Solyc02g063430.4 Solanum lycopersicum
Solyc02g091690.3 Solanum lycopersicum
Solyc04g076845.1 Solanum lycopersicum
Solyc12g088130.3 Solanum lycopersicum
Sopen02g014520 Solanum pennellii
Sopen02g036300 Solanum pennellii
Sopen04g030550 Solanum pennellii
Sp2g28730 Schrenkiella parvula
Sp6g32860 Schrenkiella parvula
TAR381G1250 Trochodendron aralioides
TAR381G1428 Trochodendron aralioides
TAR625G0878 Trochodendron aralioides
TAR625G1261 Trochodendron aralioides
TAR628G1091 Trochodendron aralioides
THA.LOC104798493 Tarenaya hassleriana
THA.LOC104798695 Tarenaya hassleriana
THA.LOC104800382 Tarenaya hassleriana
THA.LOC104803160 Tarenaya hassleriana
THA.LOC104807656 Tarenaya hassleriana
Thecc.01G083300 Theobroma cacao
Thecc.08G077000 Theobroma cacao
Thhalv10004732m.g Eutrema salsugineum
Thhalv10016038m.g Eutrema salsugineum
TPR.G12412 Trifolium pratense
TPR.G37072 Trifolium pratense
TWI12G1120 Tripterygium wilfordii
TWI77G0046 Tripterygium wilfordii
unitig_736.g22620 Utricularia gibba
vmacro05481 Vaccinium macrocarpon
vmacro21368 Vaccinium macrocarpon
VMungo0251G2057 Vigna mungo
VMungo0430G0001 Vigna mungo
VMungo0647G2200 Vigna mungo
VMungo1309G1125 Vigna mungo
Zm00001eb002830 Zea mays
Zm00001eb228320 Zea mays
Zm00001eb272150 Zea mays

User provided reference genes

Program Settings