Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p23290 Brassica napus
A04p19590 Brassica napus
A07p45060 Brassica napus
A10p26660 Brassica napus
Aa31LG3G16110 Aethionema arabicum
Aa31LG4G920 Aethionema arabicum
Aa31sc188G30 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1853 Anthoceros agrestis
Actinidia13207 Actinidia chinensis
Actinidia14106 Actinidia chinensis
Actinidia18231 Actinidia chinensis
Actinidia22312 Actinidia chinensis
Actinidia23088 Actinidia chinensis
Ah.01g006790 Amaranthus hybridus
AL2G40800 Arabidopsis lyrata
AL4G16490 Arabidopsis lyrata
AL6G21630 Arabidopsis lyrata
AL7G19890 Arabidopsis lyrata
Aqoxy7G01882 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.2WEY8Z Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A9DQ77 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AEJS5W Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DXLT9X Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PT3XPU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TTC3KU Arachis hypogaea
AT1G80640 Arabidopsis thaliana
AT2G25220 Arabidopsis thaliana
AT4G32000 Arabidopsis thaliana
AT5G11020 Arabidopsis thaliana
ATR0629G043 Amborella trichopoda
Atru.chr10.2385 Acer truncatum
Atru.chr7.2507 Acer truncatum
AUR62012451 Chenopodium quinoa
AUR62031575 Chenopodium quinoa
BcaB05g25238 Brassica carinata
BcaB06g28047 Brassica carinata
BcaC02g08362 Brassica carinata
BcaC03g15941 Brassica carinata
BcaC04g19266 Brassica carinata
BcaNung03128 Brassica carinata
BcaNung06286 Brassica carinata
BcaNung06488 Brassica carinata
BcaNung06492 Brassica carinata
BolC1t00690H Brassica oleracea
BolC2t09718H Brassica oleracea
BolC4t27058H Brassica oleracea
BolC6t40403H Brassica oleracea
BolC9t59404H Brassica oleracea
BraA01t00595Z Brassica rapa
BraA02t07325Z Brassica rapa
BraA04t17552Z Brassica rapa
BraA07t32009Z Brassica rapa
BraA10t44724Z Brassica rapa
C02p37030 Brassica napus
C04p55200 Brassica napus
C06p53890 Brassica napus
C09p65830 Brassica napus
CAN.G407.43 Capsicum annuum
CANSAT25G1705 Cannabis sativa
CANSAT56G3917 Cannabis sativa
CARHR073880 Cardamine hirsuta
CARHR116390 Cardamine hirsuta
CARHR202270 Cardamine hirsuta
CARHR239900 Cardamine hirsuta
Carub.0002s2692 Capsella rubella
Carub.0004s0483 Capsella rubella
Carub.0006s0952 Capsella rubella
Carub.0007s0855 Capsella rubella
Ca_01027_v3 Cicer arietinum L.
Ca_13047_v3 Cicer arietinum L.
Ca_15761_v3 Cicer arietinum L.
Cc04_g04850 Coffea canephora
Cc08_g00130 Coffea canephora
CDE02G0863 Ceratophyllum demersum
CDE05G1700 Ceratophyllum demersum
CDE05G2496 Ceratophyllum demersum
Cfa001904 Carpinus fangiana
Cfa013094 Carpinus fangiana
Ciclev10008263m.g Citrus clementina
Ciclev10025618m.g Citrus clementina
CiPaw.01G252400 Carya illinoinensis
CiPaw.07G227400 Carya illinoinensis
CiPaw.08G007900 Carya illinoinensis
ClCG05G016550 Citrullus lanatus
ClCG08G013580 Citrullus lanatus
ClCG09G003230 Citrullus lanatus
COL.COLO4_18927 Corchorus olitorius
COL.COLO4_26653 Corchorus olitorius
Cpa.g.sc10.117 Carica papaya
Cpa.g.sc532.2 Carica papaya
CsaV3_2G032330 Cucumis sativus L.
CsaV3_4G036810 Cucumis sativus L.
CsaV3_7G031990 Cucumis sativus L.
CSS0001988 Camellia sinensis var. sinensis
CSS0010516 Camellia sinensis var. sinensis
CSS0025173 Camellia sinensis var. sinensis
CSS0046996 Camellia sinensis var. sinensis
DCAR_003004 Daucus carota
DCAR_016291 Daucus carota
DCAR_025587 Daucus carota
Dinv03421 Davidia involucrata
Duzib150G1643 Durio zibethinus
Duzib160G0544 Durio zibethinus
Duzib168G2308 Durio zibethinus
Duzib235G0311 Durio zibethinus
ECA232G4331 Erigeron canadensis
ECA233G4481 Erigeron canadensis
ECA246G0931 Erigeron canadensis
ECA247G0574 Erigeron canadensis
EL10Ac2g04149 Beta vulgaris
Eucgr.C01681 Eucalyptus grandis
Eucgr.C02722 Eucalyptus grandis
Eucgr.F03945 Eucalyptus grandis
FAN02G2711 Fragaria x ananassa
FAN05G0094 Fragaria x ananassa
FAN09G2741 Fragaria x ananassa
FAN14G0816 Fragaria x ananassa
FAN15G0782 Fragaria x ananassa
FAN15G3331 Fragaria x ananassa
FAN20G1834 Fragaria x ananassa
FAN24G2168 Fragaria x ananassa
FAN27G2135 Fragaria x ananassa
FvH4_2g28240 Fragaria vesca
FvH4_6g28910 Fragaria vesca
Glyma.04G063100 Glycine max
Glyma.06G064400 Glycine max
Glyma.13G369100 Glycine max
Glyma.14G111900 Glycine max
Glyma.15G004700 Glycine max
Glyma.17G215900 Glycine max
Gohir.A05G057200 Gossypium hirsutum
Gohir.A05G057250 Gossypium hirsutum
Gohir.A05G120900 Gossypium hirsutum
Gohir.A06G183400 Gossypium hirsutum
Gohir.A07G030800 Gossypium hirsutum
Gohir.D05G059200 Gossypium hirsutum
Gohir.D05G059300 Gossypium hirsutum
Gohir.D05G121900 Gossypium hirsutum
Gohir.D06G190100 Gossypium hirsutum
Gohir.D07G034700 Gossypium hirsutum
Gorai.001G036400 Gossypium raimondii
Gorai.009G060300 Gossypium raimondii
Gorai.009G060400 Gossypium raimondii
Gorai.009G125400 Gossypium raimondii
Gorai.010G223000 Gossypium raimondii
GSVIVG01017261001 Vitis vinifera
GSVIVG01017568001 Vitis vinifera
GSVIVG01035915001 Vitis vinifera
HanXRQChr02g0034891 Helianthus annuus
HanXRQChr13g0403711 Helianthus annuus
HanXRQChr15g0486721 Helianthus annuus
HanXRQChr16g0500071 Helianthus annuus
HanXRQChr16g0511191 Helianthus annuus
Haze_16639 Corylus avellana
Haze_21451 Corylus avellana
Hma1.2p1_0109F.1_g052300 Hydrangea macrophylla
Hma1.2p1_0228F.1_g096630 Hydrangea macrophylla
HPP92_003785 Vanilla planifolia
HPP92_003923 Vanilla planifolia
HPP92_008841 Vanilla planifolia
HPP92_008870 Vanilla planifolia
Hund00458 Selenicereus undatus
Hund03476 Selenicereus undatus
Lalb_Chr14g0361831 Lupinus albus
Lalb_Chr14g0374011 Lupinus albus
Lalb_Chr22g0350701 Lupinus albus
Lalb_Chr23g0268361 Lupinus albus
Lj1g0012350 Lotus japonicus
Lj3g0023319 Lotus japonicus
Lj5A78T79 Lonicera japonica
Lj5g0021381 Lotus japonicus
Lj7A729G39 Lonicera japonica
Lj8A734T44 Lonicera japonica
Lju1265C1T4 Lonicera japonica
Lju1680C0T0 Lonicera japonica
Lsat_1_v5_gn_1_31740 Lactuca sativa
Lsat_1_v5_gn_4_85941 Lactuca sativa
Lsat_1_v5_gn_6_114601 Lactuca sativa
Lsat_1_v5_gn_6_18720 Lactuca sativa
Manes.03G011200 Manihot esculenta
Manes.04G105400 Manihot esculenta
Manes.11G063800 Manihot esculenta
Manes.16G126500 Manihot esculenta
Mapoly0065s0009 Marchantia polymorpha
MBI15_g33836_MAGBIO Magnolia biondii
MD08G1154200 Malus domestica
MD15G1131500 Malus domestica
MD17G1219900 Malus domestica
Medtr1g013040 Medicago truncatula
Medtr2g104790 Medicago truncatula
Medtr3g106320 Medicago truncatula
Medtr4g014900 Medicago truncatula
MELO3C011283.2 Cucumis melo
MELO3C016983.2 Cucumis melo
MELO3C023457.2 Cucumis melo
Migut.G00905 Erythranthe guttata
Migut.I00722 Erythranthe guttata
MSTRG.11170 Avicennia marina
MSTRG.22781 Avicennia marina
MSTRG.25514 Avicennia marina
Nitab4.5_0000486g0020 Nicotiana tabacum
Nitab4.5_0001454g0020 Nicotiana tabacum
Nitab4.5_0006291g0030 Nicotiana tabacum
Nitab4.5_0009538g0030 Nicotiana tabacum
Nn2g12263 Nelumbo nucifera
Nn8g39749 Nelumbo nucifera
Oeu010091.1 Olea europaea
Oeu012640.1 Olea europaea
Oeu056774.1 Olea europaea
Os05g0319700 Oryza sativa ssp. japonica
Os08g0285600 Oryza sativa ssp. japonica
Peaxi162Scf00116g00311 Petunia axillaris
Peaxi162Scf00332g00328 Petunia axillaris
PGR044G1156 Punica granatum
PGR102G0483 Punica granatum
PGSC0003DMG400017680 Solanum tuberosum
PGSC0003DMG401014197 Solanum tuberosum
PGSC0003DMG403014197 Solanum tuberosum
Phvul.001G047100 Phaseolus vulgaris
Phvul.005G181000 Phaseolus vulgaris
Phvul.009G089500 Phaseolus vulgaris
Potri.001G048500 Populus trichocarpa
Potri.003G179500 Populus trichocarpa
Potri.006G260100 Populus trichocarpa
Potri.018G022300 Populus trichocarpa
Pp3c5_4350 Physcomitrium patens
Prupe.1G486900 Prunus persica
Prupe.3G095600 Prunus persica
Psat5g304440 Pisum sativum
Psat6g028640 Pisum sativum
PSO017G4555 Papaver somniferum
PSO170G1036 Papaver somniferum
QL02p020065 Quercus lobata
QL05p034276 Quercus lobata
RcHm_v2.0_Chr2g0133481 Rosa chinensis
RcHm_v2.0_Chr6g0297161 Rosa chinensis
Rhsim07G0162200 Rhododendron simsii
Rhsim12G0188400 Rhododendron simsii
Sabra03G0131500 Salix brachista
Sabra06G0203100 Salix brachista
Sabra18G0025000 Salix brachista
SabraUnG0005000 Salix brachista
SalBow3G3954 Salvia bowleyana
SalBow7G0782 Salvia bowleyana
Sc09g0010390 Simmondsia chinensis
Sc10g0006260 Simmondsia chinensis
Sed0007144 Sechium edule
Sed0015943 Sechium edule
Sed0017643 Sechium edule
Sed0027702 Sechium edule
SEGI_02396 Sequoiadendron giganteum
SGA_v2.0_scaffold12G06254 Striga asiatica
SGA_v2.0_scaffold26G11317 Striga asiatica
SGA_v2.0_scaffold5G02748 Striga asiatica
SMO084G0002 Selaginella moellendorffii
SMO116G0338 Selaginella moellendorffii
SMO364G0073 Selaginella moellendorffii
Solyc03g117180.3 Solanum lycopersicum
Solyc04g045600.4 Solanum lycopersicum
Sopen03g036080 Solanum pennellii
Sopen04g017530 Solanum pennellii
Sp4g04340 Schrenkiella parvula
Sp5g35120 Schrenkiella parvula
Sp6g32470 Schrenkiella parvula
Sp7g29800 Schrenkiella parvula
TAR625G0540 Trochodendron aralioides
TAR636G1170 Trochodendron aralioides
THA.LOC104812447 Tarenaya hassleriana
THA.LOC104815004 Tarenaya hassleriana
THA.LOC104818601 Tarenaya hassleriana
Thecc.06G037800 Theobroma cacao
Thecc.09G018700 Theobroma cacao
Thhalv10000655m.g Eutrema salsugineum
Thhalv10013829m.g Eutrema salsugineum
Thhalv10018582m.g Eutrema salsugineum
Thhalv10025398m.g Eutrema salsugineum
TPR.G19153 Trifolium pratense
TPR.G3162 Trifolium pratense
TPR.G38900 Trifolium pratense
TWI12G0197 Tripterygium wilfordii
TWI18G0377 Tripterygium wilfordii
TWI32G1010 Tripterygium wilfordii
TWI34G0558 Tripterygium wilfordii
vmacro05148 Vaccinium macrocarpon
vmacro11226 Vaccinium macrocarpon
vmacro16865 Vaccinium macrocarpon
VMungo0647G1215 Vigna mungo
VMungo1080G0670 Vigna mungo
VMungo1309G2094 Vigna mungo
Zm00001eb234200 Zea mays
Zm00001eb275120 Zea mays
Zm00001eb386750 Zea mays

User provided reference genes

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