Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p01030 Brassica napus
A02p43960 Brassica napus
A06p32310 Brassica napus
A08p23060 Brassica napus
A09p09050 Brassica napus
Aa31LG1G16520 Aethionema arabicum
Aa31LG3G16660 Aethionema arabicum
Aa31LG6G15000 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1999 Anthoceros agrestis
Actinidia06512 Actinidia chinensis
Actinidia10273 Actinidia chinensis
Actinidia19244 Actinidia chinensis
Actinidia25307 Actinidia chinensis
Actinidia28824 Actinidia chinensis
Actinidia30849 Actinidia chinensis
Ah.02g128150 Amaranthus hybridus
Ah.03g139950 Amaranthus hybridus
AL7G12580 Arabidopsis lyrata
AL8G43060 Arabidopsis lyrata
Aqoxy5G01381 Aquilegia oxysepala
Aqoxy6G00866 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6PQ8NL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C8KBAB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D98YRY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.J6ZURK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V14B4E Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WUS189 Arachis hypogaea
AT4G38060 Arabidopsis thaliana
AT5G65480 Arabidopsis thaliana
ATR0767G149 Amborella trichopoda
Atru.chr13.1008 Acer truncatum
Atru.chr3.1244 Acer truncatum
AUR62002781 Chenopodium quinoa
AUR62014096 Chenopodium quinoa
AUR62017974 Chenopodium quinoa
BcaB03g12314 Brassica carinata
BcaB04g20017 Brassica carinata
BcaC01g00352 Brassica carinata
BcaC01g02776 Brassica carinata
BcaC03g18337 Brassica carinata
BcaC04g23262 Brassica carinata
BcaNung00944 Brassica carinata
BolC1t00113H Brassica oleracea
BolC2t12477H Brassica oleracea
BolC3t18313H Brassica oleracea
BolC3t20124H Brassica oleracea
BolC9t53954H Brassica oleracea
BraA01t00101Z Brassica rapa
BraA02t09319Z Brassica rapa
BraA06t26157Z Brassica rapa
BraA08t34264Z Brassica rapa
BraA09t36557Z Brassica rapa
C01p01150 Brassica napus
C02p64130 Brassica napus
C03p60560 Brassica napus
C03p78770 Brassica napus
C09p10540 Brassica napus
CAN.G475.25 Capsicum annuum
CANSAT01G0459 Cannabis sativa
CANSAT35G1294 Cannabis sativa
CARHR246470 Cardamine hirsuta
CARHR279460 Cardamine hirsuta
Carub.0007s0216 Capsella rubella
Carub.0008s2633 Capsella rubella
Ca_05439_v3 Cicer arietinum L.
Ca_22610_v3 Cicer arietinum L.
Ca_22704_v3 Cicer arietinum L.
Ca_23439_v3 Cicer arietinum L.
Ca_29524_v3 Cicer arietinum L.
Cc07_g14080 Coffea canephora
Cc10_g15900 Coffea canephora
CDE01G0638 Ceratophyllum demersum
CDE02G3963 Ceratophyllum demersum
CDE04G1099 Ceratophyllum demersum
CDE07G0003 Ceratophyllum demersum
Cfa006880 Carpinus fangiana
Cfa013798 Carpinus fangiana
Ciclev10002684m.g Citrus clementina
Ciclev10026628m.g Citrus clementina
CiPaw.07G047400 Carya illinoinensis
CiPaw.07G165300 Carya illinoinensis
CiPaw.08G055700 Carya illinoinensis
CiPaw.08G140300 Carya illinoinensis
ClCG01G018350 Citrullus lanatus
ClCG08G011650 Citrullus lanatus
COL.COLO4_35250 Corchorus olitorius
Cpa.g.sc21.23 Carica papaya
Cpa.g.sc55.23 Carica papaya
CsaV3_2G030230 Cucumis sativus L.
CsaV3_6G044980 Cucumis sativus L.
CSS0011978 Camellia sinensis var. sinensis
CSS0014480 Camellia sinensis var. sinensis
CSS0033608 Camellia sinensis var. sinensis
CSS0036123 Camellia sinensis var. sinensis
DCAR_009560 Daucus carota
DCAR_014183 Daucus carota
DCAR_015156 Daucus carota
Dinv13600 Davidia involucrata
Dinv36932 Davidia involucrata
Dinv42611 Davidia involucrata
Dinv44862 Davidia involucrata
Duzib041G0517 Durio zibethinus
Duzib093G1717 Durio zibethinus
Duzib116G0467 Durio zibethinus
Duzib147G1326 Durio zibethinus
Duzib187G1679 Durio zibethinus
Duzib264G1028 Durio zibethinus
ECA232G0228 Erigeron canadensis
ECA246G1103 Erigeron canadensis
EL10Ac6g14277 Beta vulgaris
Eucgr.F02152 Eucalyptus grandis
FAN04G0974 Fragaria x ananassa
FAN08G3293 Fragaria x ananassa
FAN13G2904 Fragaria x ananassa
FAN18G4003 Fragaria x ananassa
FAN19G0702 Fragaria x ananassa
FAN23G0228 Fragaria x ananassa
FAN26G3080 Fragaria x ananassa
FAN28G2025 Fragaria x ananassa
FvH4_1g19630 Fragaria vesca
FvH4_5g34720 Fragaria vesca
Glyma.01G023000 Glycine max
Glyma.02G214400 Glycine max
Glyma.06G096800 Glycine max
Glyma.08G279400 Glycine max
Glyma.09G199300 Glycine max
Glyma.14G181900 Glycine max
Glyma.18G147200 Glycine max
Gohir.A01G126600 Gossypium hirsutum
Gohir.A02G144600 Gossypium hirsutum
Gohir.A06G032200 Gossypium hirsutum
Gohir.A10G087900 Gossypium hirsutum
Gohir.D01G114200 Gossypium hirsutum
Gohir.D03G036000 Gossypium hirsutum
Gohir.D06G031400 Gossypium hirsutum
Gohir.D10G100100 Gossypium hirsutum
Gorai.002G139200 Gossypium raimondii
Gorai.003G037700 Gossypium raimondii
Gorai.010G034600 Gossypium raimondii
Gorai.011G109700 Gossypium raimondii
GSVIVG01002581001 Vitis vinifera
GSVIVG01009182001 Vitis vinifera
HanXRQChr05g0147511 Helianthus annuus
HanXRQChr12g0369061 Helianthus annuus
HanXRQChr15g0484851 Helianthus annuus
Haze_03877 Corylus avellana
Haze_22461 Corylus avellana
Hma1.2p1_0125F.1_g058850 Hydrangea macrophylla
Hma1.2p1_0433F.1_g152070 Hydrangea macrophylla
Hma1.2p1_1058F.1_g252880 Hydrangea macrophylla
Hma1.2p1_3163F.1_g333500 Hydrangea macrophylla
HPP92_010020 Vanilla planifolia
HPP92_010909 Vanilla planifolia
HPP92_010914 Vanilla planifolia
HPP92_015291 Vanilla planifolia
HPP92_016977 Vanilla planifolia
HPP92_017322 Vanilla planifolia
Hund14085 Selenicereus undatus
Hund16528 Selenicereus undatus
Hund25022 Selenicereus undatus
Lalb_Chr04g0252831 Lupinus albus
Lalb_Chr05g0216381 Lupinus albus
Lalb_Chr08g0242541 Lupinus albus
Lalb_Chr09g0325981 Lupinus albus
Lalb_Chr15g0080811 Lupinus albus
Lalb_Chr17g0344551 Lupinus albus
Lj2g0011126 Lotus japonicus
Lj2P534T23 Lonicera japonica
Lj4P717T28 Lonicera japonica
Lj4P737T43 Lonicera japonica
LjContig00408g0018505 Lotus japonicus
Lju188C3G2 Lonicera japonica
Lsat_1_v5_gn_3_63261 Lactuca sativa
Lsat_1_v5_gn_9_73980 Lactuca sativa
Manes.02G144800 Manihot esculenta
Manes.13G100300 Manihot esculenta
Manes.18G058400 Manihot esculenta
Mapoly0122s0050 Marchantia polymorpha
MBI16_g12468_MAGBIO Magnolia biondii
MBI16_g27577_MAGBIO Magnolia biondii
MD01G1039500 Malus domestica
MD08G1198200 Malus domestica
MD15G1312200 Malus domestica
MD15G1385500 Malus domestica
Medtr3g100200 Medicago truncatula
Medtr5g032070 Medicago truncatula
Medtr5g066330 Medicago truncatula
Medtr8g471140 Medicago truncatula
MELO3C007713.2 Cucumis melo
MELO3C011084.2 Cucumis melo
Migut.H02290 Erythranthe guttata
Migut.K00799 Erythranthe guttata
MSTRG.15687 Avicennia marina
MSTRG.23379 Avicennia marina
MSTRG.2597 Avicennia marina
MSTRG.3732 Avicennia marina
Nitab4.5_0000354g0160 Nicotiana tabacum
Nitab4.5_0001607g0140 Nicotiana tabacum
Nitab4.5_0007624g0050 Nicotiana tabacum
Nn1g05576 Nelumbo nucifera
Nn5g29876 Nelumbo nucifera
Oeu001196.1 Olea europaea
Oeu012460.1 Olea europaea
Oeu042223.2 Olea europaea
Os09g0376300 Oryza sativa ssp. japonica
Peaxi162Scf00160g01032 Petunia axillaris
Peaxi162Scf00454g00411 Petunia axillaris
Peaxi162Scf00474g00610 Petunia axillaris
PGR031G1901 Punica granatum
PGR102G2100 Punica granatum
PGSC0003DMG400002036 Solanum tuberosum
PGSC0003DMG400009360 Solanum tuberosum
PGSC0003DMG400016200 Solanum tuberosum
Phvul.002G147000 Phaseolus vulgaris
Phvul.008G181900 Phaseolus vulgaris
Potri.002G106300 Populus trichocarpa
Pp3c27_8200 Physcomitrium patens
Pp3c5_23690 Physcomitrium patens
Prupe.1G532300 Prunus persica
Prupe.6G201800 Prunus persica
Psat2g065400 Pisum sativum
Psat2g089080 Pisum sativum
Psat3g070280 Pisum sativum
Psat5g048960 Pisum sativum
PSO170G0446 Papaver somniferum
PSO210G6426 Papaver somniferum
PSO541G6134 Papaver somniferum
QL06p035800 Quercus lobata
QL09p017831 Quercus lobata
RcHm_v2.0_Chr2g0111191 Rosa chinensis
RcHm_v2.0_Chr7g0235401 Rosa chinensis
Rhsim06G0071500 Rhododendron simsii
Rhsim08G0016500 Rhododendron simsii
Rhsim10G0173000 Rhododendron simsii
Sabra02G0083600 Salix brachista
SalBow3G2232 Salvia bowleyana
SalBow3G2564 Salvia bowleyana
SalBow5G0292 Salvia bowleyana
SalBow5G1187 Salvia bowleyana
Sc03g0000350 Simmondsia chinensis
Sc16g0000550 Simmondsia chinensis
Sed0002345 Sechium edule
Sed0014417 Sechium edule
Sed0019131 Sechium edule
Sed0021264 Sechium edule
SEGI_11350 Sequoiadendron giganteum
SEGI_27191 Sequoiadendron giganteum
SGA_v2.0_scaffold108G30922 Striga asiatica
SGA_v2.0_scaffold195G40855 Striga asiatica
SGA_v2.0_scaffold45G17233 Striga asiatica
SHI36122 Sapria himalayana
SHI47579 Sapria himalayana
SHI51159 Sapria himalayana
SMO197G0003 Selaginella moellendorffii
Solyc04g076340.3 Solanum lycopersicum
Solyc12g087960.2 Solanum lycopersicum
Sopen00g012600 Solanum pennellii
Sopen11g005440 Solanum pennellii
Sopen12g029990 Solanum pennellii
Sp2g28560 Schrenkiella parvula
Sp7g35700 Schrenkiella parvula
TAR376G0694 Trochodendron aralioides
TAR381G1493 Trochodendron aralioides
TAR624G0101 Trochodendron aralioides
TAR624G1071 Trochodendron aralioides
TAR625G1287 Trochodendron aralioides
TAR628G0555 Trochodendron aralioides
THA.LOC104798665 Tarenaya hassleriana
THA.LOC104807670 Tarenaya hassleriana
THA.LOC104819289 Tarenaya hassleriana
THA.LOC104824913 Tarenaya hassleriana
Thecc.01G090300 Theobroma cacao
Thecc.08G071300 Theobroma cacao
Thhalv10005077m.g Eutrema salsugineum
Thhalv10026529m.g Eutrema salsugineum
TPR.G14609 Trifolium pratense
TPR.G34717 Trifolium pratense
TPR.G36788 Trifolium pratense
TPR.G6316 Trifolium pratense
TPR.G7235 Trifolium pratense
TWI36G1640 Tripterygium wilfordii
TWI53G0529 Tripterygium wilfordii
TWI56G0081 Tripterygium wilfordii
TWI74G0712 Tripterygium wilfordii
unitig_0.g1715 Utricularia gibba
unitig_736.g22588 Utricularia gibba
unitig_748.g7036 Utricularia gibba
unitig_899.g14568 Utricularia gibba
vmacro13009 Vaccinium macrocarpon
vmacro18558 Vaccinium macrocarpon
vmacro21341 Vaccinium macrocarpon
VMungo0647G0929 Vigna mungo
VMungo1215G1381 Vigna mungo
Zm00001eb042320 Zea mays
Zm00001eb098880 Zea mays
Zm00001eb178980 Zea mays
Zm00001eb311490 Zea mays

User provided reference genes

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