Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p02410 Brassica napus
A03p26150 Brassica napus
A10p30630 Brassica napus
Aa31LG11G6750 Aethionema arabicum
Aa31LG5G6790 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.151 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1838 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1840 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1842 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1851 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_362.1862 Anthoceros agrestis
Actinidia13927 Actinidia chinensis
Actinidia25156 Actinidia chinensis
Actinidia29690 Actinidia chinensis
Ah.08g221050 Amaranthus hybridus
Ah.08g221070 Amaranthus hybridus
AL4G24470 Arabidopsis lyrata
AL5G37160 Arabidopsis lyrata
AL6G15630 Arabidopsis lyrata
Aqoxy3G02447 Aquilegia oxysepala
Aqoxy4G02621 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6CB090 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.FF66V7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KI5QM5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.XTB5PX Arachis hypogaea
AT2G29690 Arabidopsis thaliana
AT3G55870 Arabidopsis thaliana
AT5G05730 Arabidopsis thaliana
ATR0618G207 Amborella trichopoda
Atru.chr12.12 Acer truncatum
AUR62001666 Chenopodium quinoa
AUR62001669 Chenopodium quinoa
AUR62020112 Chenopodium quinoa
AUR62020114 Chenopodium quinoa
BcaB01g03143 Brassica carinata
BcaB01g05753 Brassica carinata
BcaB01g05961 Brassica carinata
BcaC01g05004 Brassica carinata
BcaC02g09971 Brassica carinata
BcaC03g17073 Brassica carinata
BcaC06g32282 Brassica carinata
BcaC06g32349 Brassica carinata
BcaNung06178 Brassica carinata
BcaNung07045 Brassica carinata
BolC3t12829H Brassica oleracea
BolC3t15468H Brassica oleracea
BolC9t59873H Brassica oleracea
BraA03t09603Z Brassica rapa
BraA03t11830Z Brassica rapa
BraA10t45103Z Brassica rapa
C03p02750 Brassica napus
C03p31210 Brassica napus
C04p34460 Brassica napus
C09p71100 Brassica napus
CAN.G1802.1 Capsicum annuum
CANSAT54G1957 Cannabis sativa
CANSAT56G2596 Cannabis sativa
CANSAT56G4512 Cannabis sativa
CARHR123030 Cardamine hirsuta
CARHR165970 Cardamine hirsuta
CARHR207540 Cardamine hirsuta
Carub.0005s2264 Capsella rubella
Carub.0006s0460 Capsella rubella
Ca_02289_v3 Cicer arietinum L.
Ca_04964_v3 Cicer arietinum L.
Ca_11256_v3 Cicer arietinum L.
Ca_13959_v3 Cicer arietinum L.
Ca_14348_v3 Cicer arietinum L.
Ca_14349_v3 Cicer arietinum L.
Ca_15266_v3 Cicer arietinum L.
Ca_27663_v3 Cicer arietinum L.
Ca_28031_v3 Cicer arietinum L.
Ca_30419_v3 Cicer arietinum L.
CBR_g6337 Chara braunii
Cc01_g14070 Coffea canephora
Cc02_g06730 Coffea canephora
CDE02G0097 Ceratophyllum demersum
CDE03G0497 Ceratophyllum demersum
Cfa001347 Carpinus fangiana
Cfa009500 Carpinus fangiana
Cfa011671 Carpinus fangiana
Cfa011677 Carpinus fangiana
Ciclev10028065m.g Citrus clementina
Ciclev10031010m.g Citrus clementina
CiPaw.01G297200 Carya illinoinensis
CiPaw.13G079600 Carya illinoinensis
ClCG04G000990 Citrullus lanatus
ClCG04G001020 Citrullus lanatus
ClCG11G006180 Citrullus lanatus
COL.COLO4_19128 Corchorus olitorius
COL.COLO4_19129 Corchorus olitorius
COL.COLO4_25626 Corchorus olitorius
Cpa.g.sc112.40 Carica papaya
Cpa.g.sc19.195 Carica papaya
Cre06.g306601 Chlamydomonas reinhardtii
CsaV3_4G031290 Cucumis sativus L.
CsaV3_6G001800 Cucumis sativus L.
CSS0032141 Camellia sinensis var. sinensis
CSS0041701 Camellia sinensis var. sinensis
DCAR_011801 Daucus carota
DCAR_013774 Daucus carota
DCAR_018955 Daucus carota
DCAR_018957 Daucus carota
Dinv01621 Davidia involucrata
Dinv12772 Davidia involucrata
Dinv17975 Davidia involucrata
Dinv18435 Davidia involucrata
Dinv28629 Davidia involucrata
Dinv34406 Davidia involucrata
Duzib114G0163 Durio zibethinus
Duzib168G0994 Durio zibethinus
Duzib170G1019 Durio zibethinus
ECA233G1988 Erigeron canadensis
ECA247G2027 Erigeron canadensis
EL10Ac7g16145 Beta vulgaris
EL10Ac7g16148 Beta vulgaris
Eucgr.B02267 Eucalyptus grandis
Eucgr.G03047 Eucalyptus grandis
FAN01G0901 Fragaria x ananassa
FAN03G2394 Fragaria x ananassa
FAN06G4233 Fragaria x ananassa
FAN10G4093 Fragaria x ananassa
FAN11G0620 Fragaria x ananassa
FAN11G1158 Fragaria x ananassa
FAN16G0534 Fragaria x ananassa
FAN16G2938 Fragaria x ananassa
FAN21G0097 Fragaria x ananassa
FAN21G0964 Fragaria x ananassa
FAN25G0797 Fragaria x ananassa
FAN25G0966 Fragaria x ananassa
FvH4_3g38350 Fragaria vesca
FvH4_3g39390 Fragaria vesca
FvH4_7g24230 Fragaria vesca
Glyma.10G286102 Glycine max
Glyma.18G028750 Glycine max
Glyma.18G028800 Glycine max
Glyma.18G028900 Glycine max
Glyma.20G103200 Glycine max
Gohir.A05G304100 Gossypium hirsutum
Gohir.A07G103700 Gossypium hirsutum
Gohir.D05G303000 Gossypium hirsutum
Gohir.D07G107500 Gossypium hirsutum
Gorai.001G115500 Gossypium raimondii
Gorai.009G322200 Gossypium raimondii
GSVIVG01024770001 Vitis vinifera
GSVIVG01032851001 Vitis vinifera
HanXRQChr08g0222151 Helianthus annuus
HanXRQChr08g0229521 Helianthus annuus
HanXRQChr12g0370561 Helianthus annuus
Haze_17208 Corylus avellana
Haze_24278 Corylus avellana
Haze_24279 Corylus avellana
Haze_24281 Corylus avellana
Haze_24284 Corylus avellana
Hma1.2p1_3181F.1_g333710 Hydrangea macrophylla
HPP92_006391 Vanilla planifolia
HPP92_011531 Vanilla planifolia
HPP92_011541 Vanilla planifolia
HPP92_011542 Vanilla planifolia
Hund04874 Selenicereus undatus
Hund18852 Selenicereus undatus
Hund18855 Selenicereus undatus
Lalb_Chr02g0143621 Lupinus albus
Lalb_Chr15g0084201 Lupinus albus
Lj1g0027252 Lotus japonicus
Lj2A1080G35 Lonicera japonica
Lj4g0003195 Lotus japonicus
Lj5g0024279 Lotus japonicus
Lj6g0016243 Lotus japonicus
Lj8A12G8 Lonicera japonica
Lj8A69G13 Lonicera japonica
LjContig00142g0009048 Lotus japonicus
Lsat_1_v5_gn_8_12480 Lactuca sativa
Lsat_1_v5_gn_9_19481 Lactuca sativa
Manes.01G162800 Manihot esculenta
Manes.07G127900 Manihot esculenta
Mapoly0025s0009 Marchantia polymorpha
MBI05_g14244_MAGBIO Magnolia biondii
MBI14_g22162_MAGBIO Magnolia biondii
MCO11G720 Micromonas commoda
MD00G1120400 Malus domestica
MD01G1149800 Malus domestica
MD03G1072500 Malus domestica
MD07G1216200 Malus domestica
MD11G1077400 Malus domestica
MD11G1078000 Malus domestica
MD11G1078200 Malus domestica
MD11G1078700 Malus domestica
Medtr1g114520 Medicago truncatula
Medtr3g070290 Medicago truncatula
Medtr3g076770 Medicago truncatula
Medtr3g467000 Medicago truncatula
MELO3C008294.2 Cucumis melo
MELO3C009018.2 Cucumis melo
Migut.F01413 Erythranthe guttata
Migut.N00808 Erythranthe guttata
MSTRG.17873 Avicennia marina
MSTRG.219 Avicennia marina
MSTRG.8321 Avicennia marina
Nitab4.5_0000102g0090 Nicotiana tabacum
Nitab4.5_0000802g0090 Nicotiana tabacum
Nitab4.5_0001970g0030 Nicotiana tabacum
Nn2g11435 Nelumbo nucifera
Nn3g20973 Nelumbo nucifera
Nn6g34400 Nelumbo nucifera
Oeu001566.1 Olea europaea
Oeu001567.1 Olea europaea
Oeu019857.1 Olea europaea
Oeu019858.1 Olea europaea
Oeu025014.1 Olea europaea
Oeu025650.1 Olea europaea
Oeu028598.1 Olea europaea
Oeu045531.1 Olea europaea
Os03g0264400 Oryza sativa ssp. japonica
Os03g0826500 Oryza sativa ssp. japonica
Peaxi162Scf00074g01827 Petunia axillaris
Peaxi162Scf01313g00027 Petunia axillaris
PGR102G0516 Punica granatum
PGR142G3790 Punica granatum
PGSC0003DMG400004153 Solanum tuberosum
PGSC0003DMG400019952 Solanum tuberosum
PGSC0003DMG400026869 Solanum tuberosum
PGSC0003DMG400034444 Solanum tuberosum
Phvul.001G241600 Phaseolus vulgaris
Phvul.001G241700 Phaseolus vulgaris
Phvul.007G014800 Phaseolus vulgaris
Potri.001G250300 Populus trichocarpa
Potri.008G066600 Populus trichocarpa
Potri.009G044300 Populus trichocarpa
Potri.010G190600 Populus trichocarpa
Pp3c5_26400 Physcomitrium patens
Pp3c5_26980 Physcomitrium patens
Pp3c6_3370 Physcomitrium patens
PRCOL_00006687 Prasinoderma coloniale
Prupe.2G248100 Prunus persica
Prupe.6G059400 Prunus persica
Psat5g126520 Pisum sativum
Psat6g233840 Pisum sativum
PSO135G0735 Papaver somniferum
PSO339G2627 Papaver somniferum
PSO339G6425 Papaver somniferum
PSO384G0691 Papaver somniferum
PSO801G0822 Papaver somniferum
QL01p037693 Quercus lobata
QL03p000003 Quercus lobata
QL04p084369 Quercus lobata
QL08p062979 Quercus lobata
RcHm_v2.0_Chr1g0369821 Rosa chinensis
RcHm_v2.0_Chr2g0157091 Rosa chinensis
RcHm_v2.0_Chr4g0399261 Rosa chinensis
RcHm_v2.0_Chr5g0068931 Rosa chinensis
Rhsim03G0141700 Rhododendron simsii
Rhsim08G0182300 Rhododendron simsii
Rhsim13G0071100 Rhododendron simsii
Sabra08G0048800 Salix brachista
Sabra09G0031800 Salix brachista
Sabra10G0146900 Salix brachista
SalBow2G0853 Salvia bowleyana
SalBow6G5600 Salvia bowleyana
Sc12g0000790 Simmondsia chinensis
Sc21g0006270 Simmondsia chinensis
Sed0011543 Sechium edule
Sed0013220 Sechium edule
Sed0016600 Sechium edule
SEGI_25385 Sequoiadendron giganteum
SEGI_34086 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32917 Striga asiatica
SHI03476 Sapria himalayana
SHI07287 Sapria himalayana
SHI07289 Sapria himalayana
SMO143G0126 Selaginella moellendorffii
Solyc06g005980.4 Solanum lycopersicum
Solyc06g006100.3 Solanum lycopersicum
Sopen06g001950 Solanum pennellii
Sopen06g001960 Solanum pennellii
Sopen06g002050 Solanum pennellii
Sp4g12410 Schrenkiella parvula
Sp6g37170 Schrenkiella parvula
TAR369G0384 Trochodendron aralioides
TAR633G0379 Trochodendron aralioides
TAR636G0561 Trochodendron aralioides
THA.LOC104800726 Tarenaya hassleriana
THA.LOC104810219 Tarenaya hassleriana
THA.LOC104816555 Tarenaya hassleriana
Thecc.09G303900 Theobroma cacao
Thecc.10G022600 Theobroma cacao
Thhalv10011120m.g Eutrema salsugineum
Thhalv10013041m.g Eutrema salsugineum
Thhalv10016377m.g Eutrema salsugineum
TPR.G2560 Trifolium pratense
TPR.G4020 Trifolium pratense
TPR.G534 Trifolium pratense
TWI09G1145 Tripterygium wilfordii
TWI53G1447 Tripterygium wilfordii
TWI79G0808 Tripterygium wilfordii
unitig_26.g10205 Utricularia gibba
unitig_747.g21417 Utricularia gibba
unitig_749.g13767 Utricularia gibba
vmacro02978 Vaccinium macrocarpon
vmacro06981 Vaccinium macrocarpon
VMungo0720G1857 Vigna mungo
VMungo1080G0549 Vigna mungo
VMungo1383G0534 Vigna mungo
VMungo1383G2041 Vigna mungo
VMungo1383G2069 Vigna mungo
VMungo1383G2246 Vigna mungo
VMungo1383G2797 Vigna mungo
Zm00001eb011670 Zea mays
Zm00001eb063220 Zea mays
Zm00001eb211420 Zea mays

User provided reference genes

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