Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A05p27910 Brassica napus
A06p02620 Brassica napus
A07p07040 Brassica napus
Aa31LG10G3460 Aethionema arabicum
Aa31LG8G7660 Aethionema arabicum
Aa31sc18G170 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_362.1590 Anthoceros agrestis
Actinidia06884 Actinidia chinensis
Actinidia16306 Actinidia chinensis
Actinidia23783 Actinidia chinensis
Actinidia34555 Actinidia chinensis
Ah.04g161830 Amaranthus hybridus
Ah.06g193600 Amaranthus hybridus
Ah.08g218800 Amaranthus hybridus
AL1G58980 Arabidopsis lyrata
AL3G34770 Arabidopsis lyrata
AL3G41170 Arabidopsis lyrata
AL9U11400 Arabidopsis lyrata
Aqoxy1G00254 Aquilegia oxysepala
Aqoxy2G03286 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0BK39D Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.4F27GG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6E503M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G0QKVL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K9R0J3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TS2TKV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y5C6DK Arachis hypogaea
AT1G51170 Arabidopsis thaliana
AT3G20830 Arabidopsis thaliana
AT3G25250 Arabidopsis thaliana
AT4G13000 Arabidopsis thaliana
ATR0605G103 Amborella trichopoda
ATR0709G039 Amborella trichopoda
Atru.chr3.2581 Acer truncatum
Atru.chr6.1605 Acer truncatum
AUR62000093 Chenopodium quinoa
AUR62001178 Chenopodium quinoa
AUR62019265 Chenopodium quinoa
AUR62022147 Chenopodium quinoa
BcaB06g26156 Brassica carinata
BcaB06g26735 Brassica carinata
BcaB07g33564 Brassica carinata
BcaC05g28273 Brassica carinata
BcaC06g35805 Brassica carinata
BcaC08g43290 Brassica carinata
BolC5t33054H Brassica oleracea
BolC6t35750H Brassica oleracea
BolC7t41531H Brassica oleracea
BraA05t21678Z Brassica rapa
BraA06t23469Z Brassica rapa
BraA07t28492Z Brassica rapa
C05p43240 Brassica napus
C06p06400 Brassica napus
C07p10650 Brassica napus
CAN.G179.13 Capsicum annuum
CAN.G31.14 Capsicum annuum
CANSAT01G3142 Cannabis sativa
CANSAT54G2257 Cannabis sativa
CARHR041220 Cardamine hirsuta
CARHR096700 Cardamine hirsuta
CARHR101610 Cardamine hirsuta
Carub.0001s4008 Capsella rubella
Carub.0003s2079 Capsella rubella
Carub.0003s2565 Capsella rubella
Carub.0007s2977 Capsella rubella
Ca_01283_v3 Cicer arietinum L.
Ca_07489_v3 Cicer arietinum L.
Ca_20575_v3 Cicer arietinum L.
Ca_23193_v3 Cicer arietinum L.
Ca_27072_v3 Cicer arietinum L.
Cc01_g04740 Coffea canephora
Cc01_g16350 Coffea canephora
CDE02G0641 Ceratophyllum demersum
CDE02G1765 Ceratophyllum demersum
CDE02G2970 Ceratophyllum demersum
CDE06G0182 Ceratophyllum demersum
CDE07G1056 Ceratophyllum demersum
CDE09G1097 Ceratophyllum demersum
CDE09G1118 Ceratophyllum demersum
Cfa009730 Carpinus fangiana
Ciclev10015414m.g Citrus clementina
Ciclev10031625m.g Citrus clementina
CiPaw.13G052800 Carya illinoinensis
CiPaw.13G163700 Carya illinoinensis
ClCG02G023400 Citrullus lanatus
ClCG09G008560 Citrullus lanatus
COL.COLO4_04494 Corchorus olitorius
COL.COLO4_24843 Corchorus olitorius
Cpa.g.sc8.94 Carica papaya
Cpa.g.sc84.83 Carica papaya
CsaV3_4G024110 Cucumis sativus L.
CsaV3_7G026460 Cucumis sativus L.
CSS0006971 Camellia sinensis var. sinensis
CSS0010504 Camellia sinensis var. sinensis
CSS0012737 Camellia sinensis var. sinensis
CSS0028546 Camellia sinensis var. sinensis
CSS0048649 Camellia sinensis var. sinensis
DCAR_002053 Daucus carota
DCAR_012689 Daucus carota
Dinv08038 Davidia involucrata
Dinv23000 Davidia involucrata
Dinv28823 Davidia involucrata
Dinv36286 Davidia involucrata
Duzib138G0434 Durio zibethinus
Duzib150G0672 Durio zibethinus
Duzib168G1722 Durio zibethinus
Duzib170G0438 Durio zibethinus
ECA233G1081 Erigeron canadensis
ECA236G2244 Erigeron canadensis
ECA238G4207 Erigeron canadensis
ECA247G1761 Erigeron canadensis
EL10Ac3g07215 Beta vulgaris
EL10Ac4g10302 Beta vulgaris
EL10Ac7g17975 Beta vulgaris
Eucgr.H00745 Eucalyptus grandis
FAN11G1446 Fragaria x ananassa
FAN15G0814 Fragaria x ananassa
FAN16G0681 Fragaria x ananassa
FAN21G0694 Fragaria x ananassa
FAN24G2602 Fragaria x ananassa
FAN25G3152 Fragaria x ananassa
FAN27G3139 Fragaria x ananassa
FvH4_2g18040 Fragaria vesca
FvH4_3g43220 Fragaria vesca
Glyma.03G088800 Glycine max
Glyma.08G345500 Glycine max
Glyma.11G131800 Glycine max
Glyma.12G056000 Glycine max
Glyma.13G341400 Glycine max
Glyma.16G084700 Glycine max
Gohir.A05G068200 Gossypium hirsutum
Gohir.A07G125400 Gossypium hirsutum
Gohir.A07G160000 Gossypium hirsutum
Gohir.A07G197700 Gossypium hirsutum
Gohir.A08G013000 Gossypium hirsutum
Gohir.D05G071200 Gossypium hirsutum
Gohir.D07G129600 Gossypium hirsutum
Gohir.D07G166400 Gossypium hirsutum
Gohir.D07G204000 Gossypium hirsutum
Gohir.D08G023400 Gossypium hirsutum
Gorai.001G140200 Gossypium raimondii
Gorai.001G229700 Gossypium raimondii
Gorai.004G018700 Gossypium raimondii
Gorai.009G072200 Gossypium raimondii
Gorai.N004100 Gossypium raimondii
GSVIVG01025309001 Vitis vinifera
HanXRQChr04g0107921 Helianthus annuus
HanXRQChr04g0110211 Helianthus annuus
HanXRQChr04g0112381 Helianthus annuus
HanXRQChr06g0172201 Helianthus annuus
HanXRQChr07g0197311 Helianthus annuus
HanXRQChr08g0231741 Helianthus annuus
HanXRQChr13g0403961 Helianthus annuus
Haze_03319 Corylus avellana
Haze_23084 Corylus avellana
Hma1.2p1_0027F.1_g017040 Hydrangea macrophylla
Hma1.2p1_0781F.1_g216850 Hydrangea macrophylla
Hma1.2p1_2027F.1_g311670 Hydrangea macrophylla
HPP92_017831 Vanilla planifolia
HPP92_023703 Vanilla planifolia
Hund18477 Selenicereus undatus
Lalb_Chr01g0003321 Lupinus albus
Lalb_Chr02g0160471 Lupinus albus
Lalb_Chr19g0126001 Lupinus albus
Lalb_Chr22g0352301 Lupinus albus
Lj1A97T13 Lonicera japonica
Lj1g0016623 Lotus japonicus
Lj1P359T16 Lonicera japonica
Lj3g0010576 Lotus japonicus
Lj3g0016458 Lotus japonicus
Lj5g0021980 Lotus japonicus
Lsat_1_v5_gn_6_48420 Lactuca sativa
Lsat_1_v5_gn_8_87840 Lactuca sativa
Lsat_1_v5_gn_9_17980 Lactuca sativa
Manes.06G167100 Manihot esculenta
Manes.12G051600 Manihot esculenta
Manes.14G000800 Manihot esculenta
Mapoly0060s0068 Marchantia polymorpha
MBI04_g13616_MAGBIO Magnolia biondii
MBI08_g17117_MAGBIO Magnolia biondii
MD03G1023600 Malus domestica
MD05G1164900 Malus domestica
MD10G1154200 Malus domestica
MD11G1028700 Malus domestica
Medtr2g098240 Medicago truncatula
Medtr4g065080 Medicago truncatula
Medtr7g053200 Medicago truncatula
Medtr8g011780 Medicago truncatula
MELO3C014610.2 Cucumis melo
MELO3C021090.2 Cucumis melo
Migut.D00573 Erythranthe guttata
Migut.D02477 Erythranthe guttata
MSTRG.18410 Avicennia marina
MSTRG.18816 Avicennia marina
MSTRG.20990 Avicennia marina
MSTRG.21399 Avicennia marina
Nitab4.5_0000040g0370 Nicotiana tabacum
Nitab4.5_0001471g0010 Nicotiana tabacum
Nitab4.5_0002278g0010 Nicotiana tabacum
Nitab4.5_0002766g0010 Nicotiana tabacum
Nn1g09892 Nelumbo nucifera
Nn2g15408 Nelumbo nucifera
Nn7g36186 Nelumbo nucifera
Oeu003650.1 Olea europaea
Oeu035744.1 Olea europaea
Oeu046661.1 Olea europaea
Oeu046662.1 Olea europaea
Oeu052058.1 Olea europaea
Oeu064655.1 Olea europaea
Os02g0603000 Oryza sativa ssp. japonica
Os04g0488700 Oryza sativa ssp. japonica
Os08g0504800 Oryza sativa ssp. japonica
Os09g0486700 Oryza sativa ssp. japonica
Peaxi162Scf00054g01111 Petunia axillaris
Peaxi162Scf00839g00001 Petunia axillaris
PGR083G2394 Punica granatum
PGR102G0563 Punica granatum
PGSC0003DMG400006639 Solanum tuberosum
PGSC0003DMG400021034 Solanum tuberosum
Phvul.008G134800 Phaseolus vulgaris
Phvul.010G030100 Phaseolus vulgaris
Phvul.011G057900 Phaseolus vulgaris
Phvul.L010343 Phaseolus vulgaris
Potri.001G018300 Populus trichocarpa
Potri.002G248900 Populus trichocarpa
Potri.003G205800 Populus trichocarpa
Prupe.6G022800 Prunus persica
Prupe.8G193100 Prunus persica
Psat4g205560 Pisum sativum
Psat5g221800 Pisum sativum
Psat5g287680 Pisum sativum
Psat6g078960 Pisum sativum
PSO017G6710 Papaver somniferum
PSO339G6030 Papaver somniferum
PSO384G2808 Papaver somniferum
PSO675G5041 Papaver somniferum
QL01p005353 Quercus lobata
QL09p048263 Quercus lobata
RcHm_v2.0_Chr5g0077231 Rosa chinensis
RcHm_v2.0_Chr6g0283431 Rosa chinensis
Rhsim01G0249400 Rhododendron simsii
Rhsim13G0224300 Rhododendron simsii
Sabra01G0012900 Salix brachista
Sabra02G0189600 Salix brachista
Sabra03G0152000 Salix brachista
Sabra03G0152300 Salix brachista
SalBow3G0629 Salvia bowleyana
SalBow6G4449 Salvia bowleyana
Sc09g0000560 Simmondsia chinensis
Sc16g0011620 Simmondsia chinensis
Sc17g0001870 Simmondsia chinensis
Sed0010406 Sechium edule
Sed0015575 Sechium edule
Sed0027873 Sechium edule
SEGI_03792 Sequoiadendron giganteum
SEGI_03974 Sequoiadendron giganteum
SEGI_04768 Sequoiadendron giganteum
SEGI_08705 Sequoiadendron giganteum
SEGI_08939 Sequoiadendron giganteum
SEGI_10095 Sequoiadendron giganteum
SEGI_10685 Sequoiadendron giganteum
SEGI_15736 Sequoiadendron giganteum
SEGI_21489 Sequoiadendron giganteum
SEGI_22691 Sequoiadendron giganteum
SEGI_23319 Sequoiadendron giganteum
SEGI_24321 Sequoiadendron giganteum
SEGI_25419 Sequoiadendron giganteum
SEGI_25480 Sequoiadendron giganteum
SEGI_28236 Sequoiadendron giganteum
SEGI_29005 Sequoiadendron giganteum
SEGI_30373 Sequoiadendron giganteum
SEGI_34606 Sequoiadendron giganteum
SEGI_36400 Sequoiadendron giganteum
SGA_v2.0_scaffold7G04029 Striga asiatica
SHI52108 Sapria himalayana
SMO141G0280 Selaginella moellendorffii
SMO196G0278 Selaginella moellendorffii
Solyc09g056430.4 Solanum lycopersicum
Solyc11g061720.1 Solanum lycopersicum
Sopen09g020630 Solanum pennellii
Sopen11g023570 Solanum pennellii
Sp1g37910 Schrenkiella parvula
Sp3g18850 Schrenkiella parvula
Sp3g22900 Schrenkiella parvula
Sp7g10060 Schrenkiella parvula
TAR365G0312 Trochodendron aralioides
TAR369G0369 Trochodendron aralioides
TAR623G0874 Trochodendron aralioides
TAR633G1287 Trochodendron aralioides
THA.LOC104808805 Tarenaya hassleriana
THA.LOC104811144 Tarenaya hassleriana
THA.LOC104818125 Tarenaya hassleriana
THA.LOC104821662 Tarenaya hassleriana
Thecc.01G214100 Theobroma cacao
Thecc.09G227000 Theobroma cacao
Thhalv10002544m.g Eutrema salsugineum
Thhalv10011554m.g Eutrema salsugineum
Thhalv10020828m.g Eutrema salsugineum
TPR.G23865 Trifolium pratense
TPR.G26825 Trifolium pratense
TPR.G6875 Trifolium pratense
TWI18G1381 Tripterygium wilfordii
TWI34G0291 Tripterygium wilfordii
TWI60G1279 Tripterygium wilfordii
TWI75G1200 Tripterygium wilfordii
unitig_749.g13600 Utricularia gibba
vmacro14704 Vaccinium macrocarpon
VMungo0331G0844 Vigna mungo
VMungo1080G1316 Vigna mungo
VMungo1127G1602 Vigna mungo
VMungo1383G3628 Vigna mungo
Zm00001eb034780 Zea mays
Zm00001eb079000 Zea mays
Zm00001eb101850 Zea mays
Zm00001eb246490 Zea mays
Zm00001eb425420 Zea mays

User provided reference genes

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