Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p00120 Brassica napus
A06p37150 Brassica napus
A09p05510 Brassica napus
Aa31LG11G9640 Aethionema arabicum
Aa31LG11G9690 Aethionema arabicum
Aa31LG1G23340 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.3589 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.5120 Anthoceros agrestis
Actinidia11543 Actinidia chinensis
Actinidia20774 Actinidia chinensis
Actinidia29062 Actinidia chinensis
Actinidia32548 Actinidia chinensis
Ah.08g209960 Amaranthus hybridus
Ah.15g090380 Amaranthus hybridus
AL6G10330 Arabidopsis lyrata
AL6G39000 Arabidopsis lyrata
Aqoxy2G02878 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.F9E3EA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H7FQDY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HRZ4BY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PS6LJB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QU48A8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T15HZA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.W9TR1A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WL5YV9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Z5SY86 Arachis hypogaea
AT5G01720 Arabidopsis thaliana
AT5G27920 Arabidopsis thaliana
ATR0594G089 Amborella trichopoda
ATR0693G098 Amborella trichopoda
Atru.chr2.95 Acer truncatum
Atru.chr8.2351 Acer truncatum
AUR62000734 Chenopodium quinoa
AUR62005231 Chenopodium quinoa
AUR62006299 Chenopodium quinoa
AUR62009711 Chenopodium quinoa
AUR62026344 Chenopodium quinoa
AUR62036234 Chenopodium quinoa
AUR62039176 Chenopodium quinoa
BcaB01g06117 Brassica carinata
BcaB01g06250 Brassica carinata
BcaB04g19695 Brassica carinata
BcaC04g23654 Brassica carinata
BcaC04g23655 Brassica carinata
BcaNung04741 Brassica carinata
BolC3t12601H Brassica oleracea
BolC7t44653H Brassica oleracea
BolC9t53526H Brassica oleracea
BraA03t09402Z Brassica rapa
BraA06t26641Z Brassica rapa
BraA09t36190Z Brassica rapa
C03p00270 Brassica napus
C05p08630 Brassica napus
C07p41280 Brassica napus
C09p06010 Brassica napus
CAN.G1273.38 Capsicum annuum
CAN.G955.3 Capsicum annuum
CANSAT35G0731 Cannabis sativa
CANSAT54G1695 Cannabis sativa
CARHR186520 Cardamine hirsuta
CARHR212080 Cardamine hirsuta
Carub.0006s0011 Capsella rubella
Carub.0006s2467 Capsella rubella
Ca_09334_v3 Cicer arietinum L.
Ca_20368_v3 Cicer arietinum L.
CBR_g19843 Chara braunii
CBR_g30084 Chara braunii
Cc00_g13900 Coffea canephora
Cc01_g14960 Coffea canephora
Cc02_g34400 Coffea canephora
CDE05G3454 Ceratophyllum demersum
Cfa006657 Carpinus fangiana
Cfa011788 Carpinus fangiana
Cfa017102 Carpinus fangiana
Ciclev10000539m.g Citrus clementina
Ciclev10000558m.g Citrus clementina
Ciclev10011244m.g Citrus clementina
CiPaw.07G023900 Carya illinoinensis
CiPaw.09G216100 Carya illinoinensis
CiPaw.13G068100 Carya illinoinensis
ClCG02G019190 Citrullus lanatus
ClCG03G017180 Citrullus lanatus
ClCG10G022490 Citrullus lanatus
COL.COLO4_10556 Corchorus olitorius
COL.COLO4_11166 Corchorus olitorius
COL.COLO4_14438 Corchorus olitorius
Cpa.g.sc2.343 Carica papaya
Cpa.g.sc48.114 Carica papaya
Cpa.g.sc5.256 Carica papaya
CsaV3_1G038610 Cucumis sativus L.
CsaV3_3G033360 Cucumis sativus L.
CsaV3_6G018970 Cucumis sativus L.
CSS0006973 Camellia sinensis var. sinensis
CSS0007269 Camellia sinensis var. sinensis
CSS0015901 Camellia sinensis var. sinensis
CSS0021162 Camellia sinensis var. sinensis
CSS0047715 Camellia sinensis var. sinensis
DCAR_003371 Daucus carota
DCAR_015355 Daucus carota
DCAR_018662 Daucus carota
Dinv09681 Davidia involucrata
Dinv12184 Davidia involucrata
Dinv28702 Davidia involucrata
Dinv30840 Davidia involucrata
Dinv35421 Davidia involucrata
Duzib093G1543 Durio zibethinus
Duzib106G1805 Durio zibethinus
Duzib106G1864 Durio zibethinus
Duzib168G1340 Durio zibethinus
Duzib177G0079 Durio zibethinus
ECA234G1053 Erigeron canadensis
ECA236G3892 Erigeron canadensis
ECA247G0479 Erigeron canadensis
EL10Ac4g09888 Beta vulgaris
EL10Ac7g15876 Beta vulgaris
EL10Ac7g16789 Beta vulgaris
EL10As8g23828 Beta vulgaris
Eucgr.B01905 Eucalyptus grandis
Eucgr.J01853 Eucalyptus grandis
Eucgr.K02937 Eucalyptus grandis
FAN02G2848 Fragaria x ananassa
FAN05G3110 Fragaria x ananassa
FAN05G3214 Fragaria x ananassa
FAN09G3322 Fragaria x ananassa
FAN11G3761 Fragaria x ananassa
FAN14G4647 Fragaria x ananassa
FAN16G2220 Fragaria x ananassa
FAN21G0056 Fragaria x ananassa
FAN25G2295 Fragaria x ananassa
FvH4_3g39860 Fragaria vesca
FvH4_6g10500 Fragaria vesca
Glyma.01G049300 Glycine max
Glyma.01G128200 Glycine max
Glyma.02G232700 Glycine max
Glyma.03G042600 Glycine max
Glyma.03G234000 Glycine max
Glyma.09G107600 Glycine max
Glyma.14G200300 Glycine max
Glyma.19G231200 Glycine max
Gohir.A01G230200 Gossypium hirsutum
Gohir.A03G025000 Gossypium hirsutum
Gohir.A11G269800 Gossypium hirsutum
Gohir.D01G220201 Gossypium hirsutum
Gohir.D03G143500 Gossypium hirsutum
Gohir.D11G280000 Gossypium hirsutum
Gorai.002G266900 Gossypium raimondii
Gorai.003G150800 Gossypium raimondii
Gorai.007G302200 Gossypium raimondii
GSVIVG01024623001 Vitis vinifera
GSVIVG01030257001 Vitis vinifera
GSVIVG01031163001 Vitis vinifera
HanXRQChr01g0012761 Helianthus annuus
HanXRQChr05g0130061 Helianthus annuus
HanXRQChr10g0293471 Helianthus annuus
HanXRQChr16g0511061 Helianthus annuus
Haze_04113 Corylus avellana
Haze_21098 Corylus avellana
Haze_24424 Corylus avellana
Hma1.2p1_0472F.1_g159700 Hydrangea macrophylla
Hma1.2p1_0501F.1_g167260 Hydrangea macrophylla
Hma1.2p1_0501F.1_g167270 Hydrangea macrophylla
Hma1.2p1_2488F.1_g323150 Hydrangea macrophylla
Hma1.2p1_2488F.1_g323155 Hydrangea macrophylla
HPP92_015582 Vanilla planifolia
HPP92_017229 Vanilla planifolia
Hund03802 Selenicereus undatus
Hund05045 Selenicereus undatus
Hund07112 Selenicereus undatus
Hund19853 Selenicereus undatus
Lalb_Chr07g0190871 Lupinus albus
Lalb_Chr12g0207441 Lupinus albus
Lalb_Chr18g0045911 Lupinus albus
Lj1g0004366 Lotus japonicus
Lj3A945T19 Lonicera japonica
Lj3g0018906 Lotus japonicus
Lj9A193T20 Lonicera japonica
Lsat_1_v5_gn_5_102060 Lactuca sativa
Lsat_1_v5_gn_8_103981 Lactuca sativa
Manes.09G112800 Manihot esculenta
Manes.09G173700 Manihot esculenta
Manes.18G145100 Manihot esculenta
Mapoly0010s0090 Marchantia polymorpha
Mapoly0013s0075 Marchantia polymorpha
MBI05_g32508_MAGBIO Magnolia biondii
MBI15_g03640_MAGBIO Magnolia biondii
MBI15_g19960_MAGBIO Magnolia biondii
MBI19_g30017_MAGBIO Magnolia biondii
MD04G1167900 Malus domestica
MD11G1060100 Malus domestica
MD12G1181200 Malus domestica
Medtr4g013255 Medicago truncatula
Medtr7g112570 Medicago truncatula
MELO3C009128.2 Cucumis melo
MELO3C015287.2 Cucumis melo
MELO3C025685.2 Cucumis melo
Migut.B01010 Erythranthe guttata
Migut.J00087 Erythranthe guttata
MSTRG.17896 Avicennia marina
MSTRG.20404 Avicennia marina
MSTRG.5534 Avicennia marina
Nitab4.5_0000355g0180 Nicotiana tabacum
Nitab4.5_0003497g0070 Nicotiana tabacum
Nitab4.5_0003850g0070 Nicotiana tabacum
Nitab4.5_0006239g0020 Nicotiana tabacum
Nn2g11037 Nelumbo nucifera
Nn2g13283 Nelumbo nucifera
Nn4g25743 Nelumbo nucifera
Oeu012132.1 Olea europaea
Oeu023749.1 Olea europaea
Oeu050024.1 Olea europaea
Os11g0108932 Oryza sativa ssp. japonica
Os12g0108500 Oryza sativa ssp. japonica
Os12g0552700 Oryza sativa ssp. japonica
Peaxi162Scf00037g01523 Petunia axillaris
Peaxi162Scf00264g00860 Petunia axillaris
Peaxi162Scf00744g00225 Petunia axillaris
PGR004G0027 Punica granatum
PGR083G1730 Punica granatum
PGSC0003DMG400011864 Solanum tuberosum
PGSC0003DMG400024768 Solanum tuberosum
Phvul.006G087900 Phaseolus vulgaris
Phvul.008G251200 Phaseolus vulgaris
Phvul.010G062400 Phaseolus vulgaris
Potri.005G022600 Populus trichocarpa
Potri.006G105400 Populus trichocarpa
Potri.013G013100 Populus trichocarpa
Potri.016G128400 Populus trichocarpa
Potri.019G123400 Populus trichocarpa
Pp3c11_7220 Physcomitrium patens
Pp3c1_8810 Physcomitrium patens
Pp3c2_31270 Physcomitrium patens
Pp3c7_26040 Physcomitrium patens
Prupe.6G046600 Prunus persica
Prupe.6G286100 Prunus persica
Psat3g012440 Pisum sativum
Psat7g249400 Pisum sativum
PSO017G2695 Papaver somniferum
PSO349G0138 Papaver somniferum
QL01p025894 Quercus lobata
QL03p019441 Quercus lobata
QL07p033676 Quercus lobata
RcHm_v2.0_Chr3g0461461 Rosa chinensis
RcHm_v2.0_Chr5g0071821 Rosa chinensis
Rhsim04G0124000 Rhododendron simsii
Rhsim05G0136900 Rhododendron simsii
Rhsim05G0173000 Rhododendron simsii
Rhsim05G0226700 Rhododendron simsii
Rhsim08G0195000 Rhododendron simsii
Rhsim12G0057100 Rhododendron simsii
Sabra05G0028600 Salix brachista
Sabra13G0011800 Salix brachista
Sabra13G0123500 Salix brachista
Sabra15G0043400 Salix brachista
Sabra15G0044900 Salix brachista
Sabra15G0045600 Salix brachista
Sabra15G0048000 Salix brachista
Sabra15G0051600 Salix brachista
Sabra15G0059800 Salix brachista
Sabra15G0060500 Salix brachista
Sabra16G0130000 Salix brachista
Sabra19G0122000 Salix brachista
Sabra19G0132300 Salix brachista
SalBow4G2763 Salvia bowleyana
SalBow7G3359 Salvia bowleyana
Sc09g0002860 Simmondsia chinensis
Sc20g0006750 Simmondsia chinensis
Sc21g0004980 Simmondsia chinensis
Sed0004912 Sechium edule
Sed0009604 Sechium edule
Sed0011152 Sechium edule
Sed0012690 Sechium edule
SEGI_02648 Sequoiadendron giganteum
SEGI_04485 Sequoiadendron giganteum
SEGI_09521 Sequoiadendron giganteum
SEGI_22429 Sequoiadendron giganteum
SEGI_26861 Sequoiadendron giganteum
SEGI_29687 Sequoiadendron giganteum
SEGI_38001 Sequoiadendron giganteum
SGA_v2.0_scaffold85G26673 Striga asiatica
SMO356G0094 Selaginella moellendorffii
SMO367G0455 Selaginella moellendorffii
SMO367G1122 Selaginella moellendorffii
Solyc01g099970.4 Solanum lycopersicum
Solyc10g076290.2 Solanum lycopersicum
Sopen01g043490 Solanum pennellii
Sopen10g027910 Solanum pennellii
Sp2g21020 Schrenkiella parvula
Sp6g40980 Schrenkiella parvula
TAR369G0073 Trochodendron aralioides
TAR623G1068 Trochodendron aralioides
TAR636G0372 Trochodendron aralioides
THA.LOC104799383 Tarenaya hassleriana
THA.LOC104816175 Tarenaya hassleriana
THA.LOC104818734 Tarenaya hassleriana
Thecc.05G005500 Theobroma cacao
Thecc.05G316100 Theobroma cacao
Thecc.09G359000 Theobroma cacao
Thhalv10003812m.g Eutrema salsugineum
Thhalv10012898m.g Eutrema salsugineum
TPR.G1659 Trifolium pratense
TPR.G5266 Trifolium pratense
TPR.G5280 Trifolium pratense
TWI56G0474 Tripterygium wilfordii
TWI77G1029 Tripterygium wilfordii
unitig_26.g8959 Utricularia gibba
vmacro08918 Vaccinium macrocarpon
vmacro20333 Vaccinium macrocarpon
VMungo0331G0572 Vigna mungo
VMungo0540G0502 Vigna mungo
VMungo0647G0746 Vigna mungo
Zm00001eb068870 Zea mays
Zm00001eb094050 Zea mays
Zm00001eb137200 Zea mays
Zm00001eb163310 Zea mays
Zm00001eb165480 Zea mays
Zm00001eb261850 Zea mays
Zm00001eb410120 Zea mays

User provided reference genes

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