Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p10720 Brassica napus
A06p22030 Brassica napus
A06p26860 Brassica napus
A10p18430 Brassica napus
Aa31LG1G13140 Aethionema arabicum
Actinidia07254 Actinidia chinensis
Actinidia07915 Actinidia chinensis
Actinidia24224 Actinidia chinensis
Actinidia24225 Actinidia chinensis
Actinidia25116 Actinidia chinensis
Ah.15g090670 Amaranthus hybridus
AL5G22500 Arabidopsis lyrata
AL6G33400 Arabidopsis lyrata
Aqoxy4G02727 Aquilegia oxysepala
Aqoxy85s003 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5P3U81 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.A5ASCL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YXGX3A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZDQ75D Arachis hypogaea
AT3G44350 Arabidopsis thaliana
AT5G22380 Arabidopsis thaliana
ATR0820G111 Amborella trichopoda
ATR0820G272 Amborella trichopoda
Atru.chr3.3189 Acer truncatum
AUR62001522 Chenopodium quinoa
AUR62006223 Chenopodium quinoa
AUR62020261 Chenopodium quinoa
AUR62036991 Chenopodium quinoa
BcaB01g01167 Brassica carinata
BcaB01g04712 Brassica carinata
BcaB02g10754 Brassica carinata
BcaB05g22730 Brassica carinata
BcaB07g31418 Brassica carinata
BcaB08g36436 Brassica carinata
BcaC01g02041 Brassica carinata
BcaC01g02237 Brassica carinata
BcaC01g06584 Brassica carinata
BcaC03g13878 Brassica carinata
BcaNung07099 Brassica carinata
BcaNung07300 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p00700 Brassica napus
BolC3t13706H Brassica oleracea
BolC3t19179H Brassica oleracea
BolC9t58295H Brassica oleracea
BolSC21t60272H Brassica oleracea
BraA03t10384Z Brassica rapa
BraA06t25292Z Brassica rapa
BraA06t25621Z Brassica rapa
C03p12340 Brassica napus
C03p67530 Brassica napus
C03p69220 Brassica napus
C09p54210 Brassica napus
C09p54270 Brassica napus
CAN.G397.85 Capsicum annuum
CAN.G745.5 Capsicum annuum
CANSAT54G1970 Cannabis sativa
CANSAT64G0933 Cannabis sativa
CARHR104510 Cardamine hirsuta
CARHR191150 Cardamine hirsuta
Carub.0005s1008 Capsella rubella
Carub.0006s2013 Capsella rubella
Ca_09023_v3 Cicer arietinum L.
Ca_19439_v3 Cicer arietinum L.
Cc01_g08900 Coffea canephora
Cc06_g06140 Coffea canephora
Cfa009995 Carpinus fangiana
Cfa016642 Carpinus fangiana
Ciclev10012468m.g Citrus clementina
Ciclev10029032m.g Citrus clementina
CiPaw.09G016800 Carya illinoinensis
CiPaw.10G012100 Carya illinoinensis
CiPaw.13G133600 Carya illinoinensis
CiPaw.14G098500 Carya illinoinensis
CiPaw.14G098600 Carya illinoinensis
ClCG01G012010 Citrullus lanatus
ClCG02G022280 Citrullus lanatus
ClCG04G010190 Citrullus lanatus
COL.COLO4_29678 Corchorus olitorius
COL.COLO4_29680 Corchorus olitorius
COL.COLO4_34019 Corchorus olitorius
Cpa.g.sc104.98 Carica papaya
Cpa.g.sc195.14 Carica papaya
CsaV3_1G014920 Cucumis sativus L.
CsaV3_6G038410 Cucumis sativus L.
CsaV3_6G040810 Cucumis sativus L.
CsaV3_6G040830 Cucumis sativus L.
CSS0003331 Camellia sinensis var. sinensis
CSS0010836 Camellia sinensis var. sinensis
CSS0022987 Camellia sinensis var. sinensis
CSS0024816 Camellia sinensis var. sinensis
CSS0025768 Camellia sinensis var. sinensis
CSS0026298 Camellia sinensis var. sinensis
CSS0034532 Camellia sinensis var. sinensis
CSS0036947 Camellia sinensis var. sinensis
DCAR_012209 Daucus carota
Dinv08947 Davidia involucrata
Dinv13569 Davidia involucrata
Dinv21171 Davidia involucrata
Dinv31716 Davidia involucrata
Duzib093G1146 Durio zibethinus
Duzib093G1367 Durio zibethinus
Duzib150G0497 Durio zibethinus
Duzib168G2225 Durio zibethinus
Duzib170G0608 Durio zibethinus
ECA248G0791 Erigeron canadensis
ECA248G1846 Erigeron canadensis
EL10Ac7g16877 Beta vulgaris
Eucgr.A02635 Eucalyptus grandis
Eucgr.A02636 Eucalyptus grandis
Eucgr.A02637 Eucalyptus grandis
Eucgr.A02638 Eucalyptus grandis
Eucgr.A02639 Eucalyptus grandis
Eucgr.C02446 Eucalyptus grandis
Eucgr.I00583 Eucalyptus grandis
Eucgr.I00587 Eucalyptus grandis
Eucgr.J00505 Eucalyptus grandis
Eucgr.J00508 Eucalyptus grandis
Eucgr.J00509 Eucalyptus grandis
Eucgr.J00511 Eucalyptus grandis
Eucgr.J00512 Eucalyptus grandis
Eucgr.J00513 Eucalyptus grandis
Eucgr.J00514 Eucalyptus grandis
Eucgr.J00516 Eucalyptus grandis
Eucgr.J00517 Eucalyptus grandis
Eucgr.J00518 Eucalyptus grandis
Eucgr.J00519 Eucalyptus grandis
Eucgr.J00520 Eucalyptus grandis
Eucgr.J00521 Eucalyptus grandis
FAN05G2639 Fragaria x ananassa
FAN05G3211 Fragaria x ananassa
FAN09G1433 Fragaria x ananassa
FAN11G3231 Fragaria x ananassa
FAN14G0474 Fragaria x ananassa
FAN16G2456 Fragaria x ananassa
FAN21G0225 Fragaria x ananassa
FAN25G2453 Fragaria x ananassa
FvH4_3g25470 Fragaria vesca
FvH4_6g19430 Fragaria vesca
Glyma.03G197900 Glycine max
Glyma.11G182000 Glycine max
Glyma.12G091200 Glycine max
Glyma.12G186200 Glycine max
Glyma.13G315300 Glycine max
Glyma.19G195800 Glycine max
Gohir.A01G204800 Gossypium hirsutum
Gohir.A04G058900 Gossypium hirsutum
Gohir.A04G058926 Gossypium hirsutum
Gohir.A07G110800 Gossypium hirsutum
Gohir.A09G096500 Gossypium hirsutum
Gohir.D01G194200 Gossypium hirsutum
Gohir.D04G084600 Gossypium hirsutum
Gohir.D07G114500 Gossypium hirsutum
Gohir.D09G096300 Gossypium hirsutum
Gorai.001G122800 Gossypium raimondii
Gorai.002G238300 Gossypium raimondii
Gorai.006G113000 Gossypium raimondii
Gorai.009G399900 Gossypium raimondii
GSVIVG01026055001 Vitis vinifera
GSVIVG01033886001 Vitis vinifera
GSVIVG01036091001 Vitis vinifera
HanXRQChr01g0010161 Helianthus annuus
HanXRQChr01g0010241 Helianthus annuus
HanXRQChr02g0054331 Helianthus annuus
HanXRQChr13g0390351 Helianthus annuus
HanXRQChr13g0397171 Helianthus annuus
HanXRQChr14g0438031 Helianthus annuus
Haze_19638 Corylus avellana
Haze_19648 Corylus avellana
Haze_23355 Corylus avellana
Hma1.2p1_0820F.1_g224030 Hydrangea macrophylla
Hma1.2p1_1466F.1_g285410 Hydrangea macrophylla
HPP92_013815 Vanilla planifolia
Hund18769 Selenicereus undatus
Hund20932 Selenicereus undatus
Lalb_Chr01g0017981 Lupinus albus
Lalb_Chr19g0136391 Lupinus albus
Lalb_Chr25g0288241 Lupinus albus
Lj1A256T63 Lonicera japonica
Lj1g0001146 Lotus japonicus
Lj2C143T1 Lonicera japonica
Lj3g0013535 Lotus japonicus
Lsat_1_v5_gn_2_59341 Lactuca sativa
Lsat_1_v5_gn_5_165541 Lactuca sativa
Lsat_1_v5_gn_5_165561 Lactuca sativa
Lsat_1_v5_gn_6_38501 Lactuca sativa
Manes.04G002000 Manihot esculenta
Manes.08G027800 Manihot esculenta
Manes.08G027900 Manihot esculenta
Manes.08G028000 Manihot esculenta
Manes.08G028100 Manihot esculenta
Manes.09G052600 Manihot esculenta
Manes.09G052800 Manihot esculenta
Manes.11G163400 Manihot esculenta
MBI17_g32408_MAGBIO Magnolia biondii
MBI17_g38042_MAGBIO Magnolia biondii
MBI17_g42996_MAGBIO Magnolia biondii
MD03G1148500 Malus domestica
MD11G1167900 Malus domestica
MD12G1030200 Malus domestica
MD12G1030400 Malus domestica
MD12G1030500 Malus domestica
MD14G1030700 Malus domestica
MD14G1030800 Malus domestica
MD14G1030900 Malus domestica
MD14G1031000 Malus domestica
Medtr2g086690 Medicago truncatula
Medtr4g052620 Medicago truncatula
Medtr7g105170 Medicago truncatula
MELO3C004694.2 Cucumis melo
MELO3C014505.2 Cucumis melo
MELO3C024560.2 Cucumis melo
MELO3C024561.2 Cucumis melo
Migut.L01801 Erythranthe guttata
Migut.N02478 Erythranthe guttata
MSTRG.21033 Avicennia marina
Nitab4.5_0000573g0170 Nicotiana tabacum
Nitab4.5_0006008g0010 Nicotiana tabacum
Nn2g14216 Nelumbo nucifera
Nn6g34820 Nelumbo nucifera
Oeu002364.1 Olea europaea
Oeu014473.1 Olea europaea
Oeu017690.1 Olea europaea
Oeu027154.1 Olea europaea
Oeu047839.1 Olea europaea
Oeu047840.1 Olea europaea
Oeu047842.1 Olea europaea
Os01g0862800 Oryza sativa ssp. japonica
Os05g0442700 Oryza sativa ssp. japonica
Os11g0154500 Oryza sativa ssp. japonica
Os12g0156100 Oryza sativa ssp. japonica
Peaxi162Scf00040g00025 Petunia axillaris
Peaxi162Scf00069g00510 Petunia axillaris
PGR004G1365 Punica granatum
PGR004G2371 Punica granatum
PGR102G1718 Punica granatum
PGR119G0034 Punica granatum
PGR119G0849 Punica granatum
PGR119G1627 Punica granatum
PGR142G3822 Punica granatum
PGSC0003DMG400026332 Solanum tuberosum
Phvul.001G192000 Phaseolus vulgaris
Phvul.005G122501 Phaseolus vulgaris
Phvul.011G095500 Phaseolus vulgaris
Potri.001G218800 Populus trichocarpa
Potri.006G209200 Populus trichocarpa
Potri.009G019200 Populus trichocarpa
Potri.016G076000 Populus trichocarpa
Potri.016G076100 Populus trichocarpa
Prupe.6G134400 Prunus persica
Prupe.7G102000 Prunus persica
Psat0s3182g0040 Pisum sativum
Psat3g031880 Pisum sativum
Psat5g258920 Pisum sativum
Psat7g142200 Pisum sativum
PSO339G6017 Papaver somniferum
PSO384G4294 Papaver somniferum
QL01p011948 Quercus lobata
QL07p038239 Quercus lobata
RcHm_v2.0_Chr3g0474741 Rosa chinensis
RcHm_v2.0_Chr5g0046601 Rosa chinensis
RcHm_v2.0_Chr5g0046631 Rosa chinensis
Rhsim03G0070100 Rhododendron simsii
Rhsim05G0037500 Rhododendron simsii
Rhsim13G0113000 Rhododendron simsii
Sabra06G0161000 Salix brachista
Sabra09G0012900 Salix brachista
Sabra16G0078500 Salix brachista
Sabra16G0081100 Salix brachista
Sabra16G0125400 Salix brachista
SalBow5G2689 Salvia bowleyana
SalBow5G3935 Salvia bowleyana
SalBow6G3279 Salvia bowleyana
Sc12g0004580 Simmondsia chinensis
Sc20g0006380 Simmondsia chinensis
Sed0000796 Sechium edule
Sed0013873 Sechium edule
Sed0021468 Sechium edule
Sed0021775 Sechium edule
SGA_v2.0_scaffold184G39989 Striga asiatica
SGA_v2.0_scaffold22G09850 Striga asiatica
Solyc09g010160.3 Solanum lycopersicum
Solyc11g068620.2 Solanum lycopersicum
Sopen11g027340 Solanum pennellii
Sp5g16850 Schrenkiella parvula
Sp6g22870 Schrenkiella parvula
TAR623G1088 Trochodendron aralioides
TAR633G1438 Trochodendron aralioides
TAR636G0854 Trochodendron aralioides
TAR636G3312 Trochodendron aralioides
THA.LOC104799552 Tarenaya hassleriana
THA.LOC104814782 Tarenaya hassleriana
Thecc.05G094700 Theobroma cacao
Thecc.05G094800 Theobroma cacao
Thecc.09G279800 Theobroma cacao
Thhalv10010503m.g Eutrema salsugineum
Thhalv10014563m.g Eutrema salsugineum
TPR.G17215 Trifolium pratense
TPR.G23359 Trifolium pratense
TPR.G4559 Trifolium pratense
TWI74G0311 Tripterygium wilfordii
TWI74G1682 Tripterygium wilfordii
TWI75G1850 Tripterygium wilfordii
TWI77G0974 Tripterygium wilfordii
unitig_22.g5131 Utricularia gibba
vmacro03325 Vaccinium macrocarpon
vmacro07440 Vaccinium macrocarpon
vmacro07441 Vaccinium macrocarpon
vmacro08866 Vaccinium macrocarpon
vmacro23099 Vaccinium macrocarpon
vmacro23101 Vaccinium macrocarpon
vmacro23373 Vaccinium macrocarpon
vmacro23375 Vaccinium macrocarpon
VMungo1080G0403 Vigna mungo
VMungo1127G1137 Vigna mungo
VMungo1383G1491 Vigna mungo
Zm00001eb147030 Zea mays
Zm00001eb197170 Zea mays
Zm00001eb288900 Zea mays
Zm00001eb348340 Zea mays
Zm00001eb417690 Zea mays

User provided reference genes

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