Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p21170 Brassica napus
A03p49810 Brassica napus
A04p34400 Brassica napus
A05p01290 Brassica napus
A10p00640 Brassica napus
Aa31LG1G10630 Aethionema arabicum
Aa31LG1G27860 Aethionema arabicum
Aa31LG2G12490 Aethionema arabicum
Actinidia07970 Actinidia chinensis
Actinidia20248 Actinidia chinensis
Actinidia21175 Actinidia chinensis
Actinidia24957 Actinidia chinensis
Actinidia27560 Actinidia chinensis
Actinidia33765 Actinidia chinensis
Ah.02g111700 Amaranthus hybridus
Ah.02g111710 Amaranthus hybridus
Ah.05g179450 Amaranthus hybridus
Ah.11g049860 Amaranthus hybridus
AL1G11120 Arabidopsis lyrata
AL1G11200 Arabidopsis lyrata
AL4G45930 Arabidopsis lyrata
AL7G38580 Arabidopsis lyrata
Aqoxy6G00026 Aquilegia oxysepala
Aqoxy7G00070 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.83FN4T Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N0BKZ2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TPIF41 Arachis hypogaea
AT1G01260 Arabidopsis thaliana
AT2G46510 Arabidopsis thaliana
AT4G16430 Arabidopsis thaliana
ATR0602G255 Amborella trichopoda
ATR0686G241 Amborella trichopoda
ATR0712G110 Amborella trichopoda
ATR0824G235 Amborella trichopoda
ATR1089G092 Amborella trichopoda
Atru.chr5.1624 Acer truncatum
Atru.chr5.681 Acer truncatum
Atru.chr5.682 Acer truncatum
AUR62004505 Chenopodium quinoa
AUR62011907 Chenopodium quinoa
AUR62011908 Chenopodium quinoa
AUR62023449 Chenopodium quinoa
AUR62032220 Chenopodium quinoa
AUR62032221 Chenopodium quinoa
BcaB01g03210 Brassica carinata
BcaB03g13569 Brassica carinata
BcaC02g07035 Brassica carinata
BcaC02g07036 Brassica carinata
BcaC09g50342 Brassica carinata
BcaNung00198 Brassica carinata
BcaNung06885 Brassica carinata
BolC1t02591H Brassica oleracea
BolC4t21796H Brassica oleracea
BolC4t28707H Brassica oleracea
BolC5t28855H Brassica oleracea
BolC7t45309H Brassica oleracea
BraA01t02027Z Brassica rapa
BraA03t14076Z Brassica rapa
BraA04t18901Z Brassica rapa
BraA05t19127Z Brassica rapa
BraA10t42342Z Brassica rapa
C01p26440 Brassica napus
C04p01420 Brassica napus
C04p72200 Brassica napus
C05p00690 Brassica napus
C07p47870 Brassica napus
CAN.G1415.24 Capsicum annuum
CAN.G382.7 Capsicum annuum
CAN.G611.5 Capsicum annuum
CAN.G771.20 Capsicum annuum
CANSAT54G0568 Cannabis sativa
CANSAT56G0053 Cannabis sativa
CARHR001200 Cardamine hirsuta
CARHR141840 Cardamine hirsuta
CARHR222800 Cardamine hirsuta
Carub.0001s0095 Capsella rubella
Carub.0004s2921 Capsella rubella
Carub.0007s2510 Capsella rubella
Ca_08657_v3 Cicer arietinum L.
Ca_09515_v3 Cicer arietinum L.
Ca_23526_v3 Cicer arietinum L.
Cc01_g18590 Coffea canephora
Cc02_g39470 Coffea canephora
CDE02G1348 Ceratophyllum demersum
CDE08G1255 Ceratophyllum demersum
CDE10G0498 Ceratophyllum demersum
CDE10G1022 Ceratophyllum demersum
Cfa002377 Carpinus fangiana
Cfa003790 Carpinus fangiana
Ciclev10019339m.g Citrus clementina
Ciclev10019816m.g Citrus clementina
CiPaw.01G077000 Carya illinoinensis
CiPaw.03G259800 Carya illinoinensis
CiPaw.04G183900 Carya illinoinensis
CiPaw.04G184000 Carya illinoinensis
CiPaw.04G184100 Carya illinoinensis
CiPaw.15G123800 Carya illinoinensis
ClCG07G000790 Citrullus lanatus
COL.COLO4_05586 Corchorus olitorius
COL.COLO4_06275 Corchorus olitorius
Cpa.g.c43518 Carica papaya
Cpa.g.c45808 Carica papaya
Cpa.g.sc2702.1 Carica papaya
Cpa.g.sc50.53 Carica papaya
CsaV3_3G007980 Cucumis sativus L.
CsaV3_3G022420 Cucumis sativus L.
CSS0011668 Camellia sinensis var. sinensis
CSS0012339 Camellia sinensis var. sinensis
CSS0029763 Camellia sinensis var. sinensis
CSS0037363 Camellia sinensis var. sinensis
CSS0043049 Camellia sinensis var. sinensis
CSS0048738 Camellia sinensis var. sinensis
DCAR_000434 Daucus carota
DCAR_005396 Daucus carota
DCAR_018460 Daucus carota
DCAR_025258 Daucus carota
Dinv22451 Davidia involucrata
Dinv32599 Davidia involucrata
Dinv34592 Davidia involucrata
Dinv35122 Davidia involucrata
Duzib133G0663 Durio zibethinus
Duzib133G0783 Durio zibethinus
Duzib268G1595 Durio zibethinus
ECA234G4127 Erigeron canadensis
ECA247G2598 Erigeron canadensis
EL10Ac1g00253 Beta vulgaris
EL10Ac5g10435 Beta vulgaris
EL10Ac5g10436 Beta vulgaris
Eucgr.E00047 Eucalyptus grandis
Eucgr.K03293 Eucalyptus grandis
FAN01G2125 Fragaria x ananassa
FAN03G2897 Fragaria x ananassa
FAN06G2064 Fragaria x ananassa
FAN06G4092 Fragaria x ananassa
FAN10G2162 Fragaria x ananassa
FAN10G3227 Fragaria x ananassa
FAN15G1029 Fragaria x ananassa
FAN15G1505 Fragaria x ananassa
FAN20G1353 Fragaria x ananassa
FAN24G1555 Fragaria x ananassa
FAN27G0637 Fragaria x ananassa
FvH4_2g22150 Fragaria vesca
FvH4_7g16800 Fragaria vesca
Glyma.03G258100 Glycine max
Glyma.07G055200 Glycine max
Glyma.10G034300 Glycine max
Glyma.13G120700 Glycine max
Glyma.16G023900 Glycine max
Glyma.19G256700 Glycine max
Glyma.20G003000 Glycine max
Gohir.A11G097500 Gossypium hirsutum
Gohir.A11G128600 Gossypium hirsutum
Gohir.D08G146050 Gossypium hirsutum
Gohir.D11G102200 Gossypium hirsutum
Gohir.D11G134400 Gossypium hirsutum
Gorai.004G151500 Gossypium raimondii
Gorai.007G109300 Gossypium raimondii
Gorai.007G143800 Gossypium raimondii
GSVIVG01000771001 Vitis vinifera
GSVIVG01027162001 Vitis vinifera
GSVIVG01038746001 Vitis vinifera
HanXRQChr10g0281311 Helianthus annuus
HanXRQChr15g0468041 Helianthus annuus
HanXRQChr16g0524231 Helianthus annuus
Haze_15670 Corylus avellana
Haze_24577 Corylus avellana
Hma1.2p1_0975F.1_g243190 Hydrangea macrophylla
Hma1.2p1_2910F.1_g330160 Hydrangea macrophylla
Hma1.2p1_3059F.1_g332240 Hydrangea macrophylla
HPP92_021498 Vanilla planifolia
HPP92_021521 Vanilla planifolia
HPP92_024617 Vanilla planifolia
Lalb_Chr01g0019771 Lupinus albus
Lalb_Chr04g0254401 Lupinus albus
Lalb_Chr10g0100601 Lupinus albus
Lalb_Chr15g0076311 Lupinus albus
Lalb_Chr18g0044581 Lupinus albus
Lj1C61T4 Lonicera japonica
Lj1g0010959 Lotus japonicus
Lj3g0014837 Lotus japonicus
Lj7P499T12 Lonicera japonica
Lj9E599T1 Lonicera japonica
Lj9P599T31 Lonicera japonica
Lsat_1_v5_gn_3_140101 Lactuca sativa
Lsat_1_v5_gn_4_33781 Lactuca sativa
Lsat_1_v5_gn_9_9421 Lactuca sativa
Manes.01G199900 Manihot esculenta
Manes.01G245600 Manihot esculenta
Manes.05G022000 Manihot esculenta
MBI06_g16623_MAGBIO Magnolia biondii
MBI07_g37058_MAGBIO Magnolia biondii
MD01G1082700 Malus domestica
MD05G1202300 Malus domestica
MD05G1202500 Malus domestica
MD05G1202900 Malus domestica
MD07G1151000 Malus domestica
MD10G1190000 Malus domestica
Medtr7g096350 Medicago truncatula
Medtr7g117670 Medicago truncatula
Medtr8g027495 Medicago truncatula
MELO3C006016.2 Cucumis melo
MELO3C024041.2 Cucumis melo
Migut.B01884 Erythranthe guttata
Migut.D00401 Erythranthe guttata
Migut.N01539 Erythranthe guttata
Migut.O00642 Erythranthe guttata
MSTRG.17351 Avicennia marina
MSTRG.17480 Avicennia marina
MSTRG.18305 Avicennia marina
MSTRG.20908 Avicennia marina
MSTRG.28268 Avicennia marina
MSTRG.4805 Avicennia marina
Nitab4.5_0000258g0210 Nicotiana tabacum
Nitab4.5_0001044g0090 Nicotiana tabacum
Nitab4.5_0001763g0070 Nicotiana tabacum
Nitab4.5_0002614g0020 Nicotiana tabacum
Nitab4.5_0004506g0010 Nicotiana tabacum
Nitab4.5_0011880g0030 Nicotiana tabacum
Nn3g17161 Nelumbo nucifera
Nn5g27183 Nelumbo nucifera
Nn7g38083 Nelumbo nucifera
Oeu004955.1 Olea europaea
Oeu004981.2 Olea europaea
Oeu007884.1 Olea europaea
Oeu008703.1 Olea europaea
Oeu010116.1 Olea europaea
Oeu025805.1 Olea europaea
Oeu035807.1 Olea europaea
Oeu035808.1 Olea europaea
Oeu043230.1 Olea europaea
Oeu058812.1 Olea europaea
Os01g0235700 Oryza sativa ssp. japonica
Os01g0705700 Oryza sativa ssp. japonica
Peaxi162Scf00345g00021 Petunia axillaris
Peaxi162Scf00716g00024 Petunia axillaris
Peaxi162Scf01530g00011 Petunia axillaris
PGR031G1756 Punica granatum
PGR044G0257 Punica granatum
PGSC0003DMG400000232 Solanum tuberosum
PGSC0003DMG400007010 Solanum tuberosum
PGSC0003DMG400020066 Solanum tuberosum
Phvul.006G114000 Phaseolus vulgaris
Phvul.007G179100 Phaseolus vulgaris
Phvul.010G114800 Phaseolus vulgaris
Potri.002G042000 Populus trichocarpa
Potri.002G172101 Populus trichocarpa
Potri.005G221100 Populus trichocarpa
Potri.014G099700 Populus trichocarpa
Prupe.2G190100 Prunus persica
Prupe.8G228700 Prunus persica
Psat0s1094g0040 Pisum sativum
Psat3g059400 Pisum sativum
Psat4g161720 Pisum sativum
Psat6g048360 Pisum sativum
PSO063G2560 Papaver somniferum
PSO170G1723 Papaver somniferum
PSO480G0001 Papaver somniferum
QL04p060462 Quercus lobata
QL12p043055 Quercus lobata
RcHm_v2.0_Chr1g0360001 Rosa chinensis
RcHm_v2.0_Chr6g0268091 Rosa chinensis
RcHm_v2.0_Chr6g0268101 Rosa chinensis
RcHm_v2.0_Chr6g0288981 Rosa chinensis
Rhsim01G0267800 Rhododendron simsii
Rhsim07G0003400 Rhododendron simsii
Sabra02G0033800 Salix brachista
Sabra02G0140700 Salix brachista
Sabra05G0170100 Salix brachista
Sabra14G0073100 Salix brachista
SalBow3G2717 Salvia bowleyana
SalBow4G0987 Salvia bowleyana
SalBow4G3056 Salvia bowleyana
SalBow5G1352 Salvia bowleyana
SalBow6G4334 Salvia bowleyana
SalBow6G4412 Salvia bowleyana
SalBow6G5052 Salvia bowleyana
Sc01g0002610 Simmondsia chinensis
Sc05g0000840 Simmondsia chinensis
Sc23g0002040 Simmondsia chinensis
Sed0003031 Sechium edule
Sed0008015 Sechium edule
Sed0016772 Sechium edule
SEGI_04624 Sequoiadendron giganteum
SGA_v2.0_scaffold22G09983 Striga asiatica
SGA_v2.0_scaffold5G03027 Striga asiatica
SGA_v2.0_scaffold98G29330 Striga asiatica
Solyc01g096050.4 Solanum lycopersicum
Solyc05g050560.1 Solanum lycopersicum
Solyc06g083980.3 Solanum lycopersicum
Sopen01g039770 Solanum pennellii
Sopen05g028990 Solanum pennellii
Sopen06g035370 Solanum pennellii
Sp1g01020 Schrenkiella parvula
Sp4g28550 Schrenkiella parvula
Sp7g14960 Schrenkiella parvula
TAR375G0001 Trochodendron aralioides
TAR376G0783 Trochodendron aralioides
TAR376G0937 Trochodendron aralioides
TAR629G1367 Trochodendron aralioides
THA.LOC104801366 Tarenaya hassleriana
THA.LOC104802079 Tarenaya hassleriana
THA.LOC104817367 Tarenaya hassleriana
THA.LOC104824169 Tarenaya hassleriana
THA.LOC104825881 Tarenaya hassleriana
THA.LOC104827624 Tarenaya hassleriana
Thecc.01G263800 Theobroma cacao
Thecc.01G341000 Theobroma cacao
Thhalv10001374m.g Eutrema salsugineum
Thhalv10007139m.g Eutrema salsugineum
Thhalv10025122m.g Eutrema salsugineum
TPR.G20237 Trifolium pratense
TPR.G4747 Trifolium pratense
TPR.G5750 Trifolium pratense
TWI12G0196 Tripterygium wilfordii
TWI14G0491 Tripterygium wilfordii
TWI18G0487 Tripterygium wilfordii
TWI23G1035 Tripterygium wilfordii
TWI59G1052 Tripterygium wilfordii
unitig_0.g150 Utricularia gibba
unitig_62.g23790 Utricularia gibba
unitig_62.g23791 Utricularia gibba
unitig_899.g14795 Utricularia gibba
vmacro13167 Vaccinium macrocarpon
vmacro14859 Vaccinium macrocarpon
VMungo0331G0125 Vigna mungo
VMungo0540G2148 Vigna mungo
Zm00001eb114530 Zea mays
Zm00001eb119000 Zea mays
Zm00001eb155410 Zea mays
Zm00001eb339360 Zea mays

User provided reference genes

Program Settings