Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p06470 Brassica napus
A06p15370 Brassica napus
A08p29930 Brassica napus
A09p59460 Brassica napus
A10p19290 Brassica napus
Aa31LG1G13950 Aethionema arabicum
Aa31LG7G3930 Aethionema arabicum
Actinidia02481 Actinidia chinensis
Actinidia30246 Actinidia chinensis
Actinidia31877 Actinidia chinensis
Actinidia38522 Actinidia chinensis
Actinidia39633 Actinidia chinensis
Ah.09g229180 Amaranthus hybridus
Ah.09g229190 Amaranthus hybridus
Ah.10g032700 Amaranthus hybridus
Ah.14g084800 Amaranthus hybridus
AL1G31800 Arabidopsis lyrata
AL6G32290 Arabidopsis lyrata
Aqoxy7G02673 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.6B39MA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.F6IJX6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HEXM1C Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MIX90M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RD18JJ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S8K9LU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZC30QF Arachis hypogaea
AT1G19220 Arabidopsis thaliana
AT5G20730 Arabidopsis thaliana
ATR0626G378 Amborella trichopoda
ATR0681G058 Amborella trichopoda
Atru.chr7.1748 Acer truncatum
Atru.chr7.964 Acer truncatum
AUR62020722 Chenopodium quinoa
AUR62025282 Chenopodium quinoa
AUR62027988 Chenopodium quinoa
AUR62028286 Chenopodium quinoa
BcaB03g12926 Brassica carinata
BcaB07g31937 Brassica carinata
BcaB08g36523 Brassica carinata
BcaC03g13795 Brassica carinata
BcaC04g19464 Brassica carinata
BcaC05g25819 Brassica carinata
BcaC07g38987 Brassica carinata
BcaC07g38990 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p01350 Brassica napus
BolC2t07069H Brassica oleracea
BolC5t30465H Brassica oleracea
BolC8t49552H Brassica oleracea
BolC8t51831H Brassica oleracea
BolC9t58406H Brassica oleracea
BraA02t05592Z Brassica rapa
BraA06t24650Z Brassica rapa
BraA08t34928Z Brassica rapa
BraA10t44006Z Brassica rapa
C05p17600 Brassica napus
C08p19310 Brassica napus
C08p42750 Brassica napus
C09p55450 Brassica napus
CAN.G106.14 Capsicum annuum
CAN.G600.4 Capsicum annuum
CAN.G63.5 Capsicum annuum
CANSAT56G1397 Cannabis sativa
CANSAT80G1874 Cannabis sativa
CARHR019820 Cardamine hirsuta
CARHR192080 Cardamine hirsuta
Carub.0001s1882 Capsella rubella
Carub.0006s1907 Capsella rubella
Ca_02237_v3 Cicer arietinum L.
Ca_09317_v3 Cicer arietinum L.
Ca_17415_v3 Cicer arietinum L.
Ca_26724_v3 Cicer arietinum L.
Cc00_g00210 Coffea canephora
Cc06_g12540 Coffea canephora
CDE02G3753 Ceratophyllum demersum
CDE04G3003 Ceratophyllum demersum
CDE04G3294 Ceratophyllum demersum
CDE05G1871 Ceratophyllum demersum
CDE05G1994 Ceratophyllum demersum
CDE05G2746 Ceratophyllum demersum
CDE05G3321 Ceratophyllum demersum
CDE06G1466 Ceratophyllum demersum
Cfa002957 Carpinus fangiana
Cfa020740 Carpinus fangiana
Ciclev10007286m.g Citrus clementina
Ciclev10007292m.g Citrus clementina
CiPaw.03G203000 Carya illinoinensis
CiPaw.04G140900 Carya illinoinensis
CiPaw.15G156100 Carya illinoinensis
CiPaw.16G103300 Carya illinoinensis
ClCG11G001330 Citrullus lanatus
ClCG11G011470 Citrullus lanatus
COL.COLO4_21228 Corchorus olitorius
COL.COLO4_28857 Corchorus olitorius
Cpa.g.sc115.30 Carica papaya
Cpa.g.sc261.2 Carica papaya
CsaV3_2G001050 Cucumis sativus L.
CsaV3_2G009030 Cucumis sativus L.
CSS0010981 Camellia sinensis var. sinensis
CSS0011558 Camellia sinensis var. sinensis
CSS0025004 Camellia sinensis var. sinensis
CSS0029767 Camellia sinensis var. sinensis
DCAR_011930 Daucus carota
DCAR_020464 Daucus carota
Dinv12604 Davidia involucrata
Dinv25528 Davidia involucrata
Dinv26469 Davidia involucrata
Dinv26470 Davidia involucrata
Dinv42420 Davidia involucrata
Duzib150G0086 Durio zibethinus
Duzib168G1717 Durio zibethinus
Duzib168G1936 Durio zibethinus
Duzib187G0052 Durio zibethinus
ECA234G2051 Erigeron canadensis
ECA240G1933 Erigeron canadensis
ECA240G3095 Erigeron canadensis
EL10Ac2g03629 Beta vulgaris
EL10Ac8g19013 Beta vulgaris
Eucgr.C02178 Eucalyptus grandis
Eucgr.C03293 Eucalyptus grandis
FAN07G1829 Fragaria x ananassa
FAN12G1953 Fragaria x ananassa
FAN12G3295 Fragaria x ananassa
FAN17G0964 Fragaria x ananassa
FAN19G1690 Fragaria x ananassa
FAN22G2257 Fragaria x ananassa
FAN23G3048 Fragaria x ananassa
FAN26G0676 Fragaria x ananassa
FAN26G2171 Fragaria x ananassa
FAN28G2143 Fragaria x ananassa
FvH4_1g09150 Fragaria vesca
FvH4_4g06190 Fragaria vesca
Glyma.01G002100 Glycine max
Glyma.05G221300 Glycine max
Glyma.07G130400 Glycine max
Glyma.08G027800 Glycine max
Glyma.09G072200 Glycine max
Glyma.13G112600 Glycine max
Glyma.15G181000 Glycine max
Glyma.17G047100 Glycine max
Gohir.A05G035100 Gossypium hirsutum
Gohir.A05G408200 Gossypium hirsutum
Gohir.A06G078900 Gossypium hirsutum
Gohir.A07G016400 Gossypium hirsutum
Gohir.D04G007300 Gossypium hirsutum
Gohir.D05G036600 Gossypium hirsutum
Gohir.D06G078200 Gossypium hirsutum
Gohir.D07G016200 Gossypium hirsutum
Gorai.001G017000 Gossypium raimondii
Gorai.009G037100 Gossypium raimondii
Gorai.010G091300 Gossypium raimondii
Gorai.012G009000 Gossypium raimondii
GSVIVG01015035001 Vitis vinifera
GSVIVG01032251001 Vitis vinifera
HanXRQChr03g0060071 Helianthus annuus
HanXRQChr03g0067321 Helianthus annuus
HanXRQChr09g0245951 Helianthus annuus
HanXRQChr10g0309591 Helianthus annuus
HanXRQChr12g0359201 Helianthus annuus
Haze_19056 Corylus avellana
Haze_26045 Corylus avellana
Hma1.2p1_0263F.1_g105440 Hydrangea macrophylla
Hma1.2p1_1821F.1_g304240 Hydrangea macrophylla
HPP92_004357 Vanilla planifolia
HPP92_017036 Vanilla planifolia
HPP92_017037 Vanilla planifolia
HPP92_018352 Vanilla planifolia
HPP92_018353 Vanilla planifolia
Hund03233 Selenicereus undatus
Hund08834 Selenicereus undatus
Hund26070 Selenicereus undatus
Lalb_Chr07g0181321 Lupinus albus
Lalb_Chr07g0181331 Lupinus albus
Lalb_Chr08g0232751 Lupinus albus
Lalb_Chr11g0074091 Lupinus albus
Lalb_Chr13g0299311 Lupinus albus
Lj2g0002226 Lotus japonicus
Lj2g0013747 Lotus japonicus
Lj4A917T73 Lonicera japonica
Lj4g0020050 Lotus japonicus
Lj5C745T2 Lonicera japonica
Lj6g0011381 Lotus japonicus
Lj7A689G80 Lonicera japonica
Lsat_1_v5_gn_5_139420 Lactuca sativa
Lsat_1_v5_gn_5_81441 Lactuca sativa
Lsat_1_v5_gn_5_81461 Lactuca sativa
Lsat_1_v5_gn_5_81601 Lactuca sativa
Lsat_1_v5_gn_6_56800 Lactuca sativa
Lsat_1_v5_gn_7_35261 Lactuca sativa
Lsat_1_v5_gn_7_57521 Lactuca sativa
Manes.02G226900 Manihot esculenta
Manes.03G043900 Manihot esculenta
Manes.16G091200 Manihot esculenta
MBI13_g01701_MAGBIO Magnolia biondii
MBI13_g34295_MAGBIO Magnolia biondii
MBI16_g37215_MAGBIO Magnolia biondii
MD02G1096700 Malus domestica
MD13G1234500 Malus domestica
MD15G1221400 Malus domestica
MD16G1239300 Malus domestica
Medtr2g043250 Medicago truncatula
Medtr4g124900 Medicago truncatula
Medtr8g101360 Medicago truncatula
MELO3C003938.2 Cucumis melo
MELO3C004665.2 Cucumis melo
Migut.J00833 Erythranthe guttata
Migut.J00834 Erythranthe guttata
Migut.J00900 Erythranthe guttata
Migut.L01587 Erythranthe guttata
Migut.L01914 Erythranthe guttata
MSTRG.10466 Avicennia marina
MSTRG.10492 Avicennia marina
MSTRG.19394 Avicennia marina
MSTRG.19438 Avicennia marina
MSTRG.26520 Avicennia marina
Nitab4.5_0000404g0210 Nicotiana tabacum
Nitab4.5_0000899g0130 Nicotiana tabacum
Nitab4.5_0001535g0030 Nicotiana tabacum
Nitab4.5_0001565g0070 Nicotiana tabacum
Nitab4.5_0004188g0050 Nicotiana tabacum
Nitab4.5_0009109g0060 Nicotiana tabacum
Nn2g12781 Nelumbo nucifera
Nn2g16022 Nelumbo nucifera
Nn2g16026 Nelumbo nucifera
Nn3g19236 Nelumbo nucifera
Nn6g35662 Nelumbo nucifera
Nn8g38570 Nelumbo nucifera
Nn8g41104 Nelumbo nucifera
Oeu000289.1 Olea europaea
Oeu007427.1 Olea europaea
Oeu011830.1 Olea europaea
Oeu021031.1 Olea europaea
Oeu024520.1 Olea europaea
Oeu028828.1 Olea europaea
Os02g0141100 Oryza sativa ssp. japonica
Os06g0196700 Oryza sativa ssp. japonica
Os06g0702600 Oryza sativa ssp. japonica
Os08g0520550 Oryza sativa ssp. japonica
Peaxi162Scf00320g00212 Petunia axillaris
Peaxi162Scf00547g00610 Petunia axillaris
Peaxi162Scf00954g00314 Petunia axillaris
PGR044G1173 Punica granatum
PGR044G2644 Punica granatum
PGSC0003DMG400002392 Solanum tuberosum
PGSC0003DMG400009773 Solanum tuberosum
PGSC0003DMG400013686 Solanum tuberosum
Phvul.003G128800 Phaseolus vulgaris
Phvul.004G177600 Phaseolus vulgaris
Phvul.009G224800 Phaseolus vulgaris
Potri.006G077800 Populus trichocarpa
Potri.006G138500 Populus trichocarpa
Potri.018G063000 Populus trichocarpa
Potri.018G145800 Populus trichocarpa
Prupe.1G065300 Prunus persica
Prupe.7G194200 Prunus persica
Psat1g135760 Pisum sativum
Psat4g019080 Pisum sativum
Psat7g021640 Pisum sativum
PSO063G3510 Papaver somniferum
PSO170G3877 Papaver somniferum
PSO386G0018 Papaver somniferum
PSO724G0084 Papaver somniferum
QL11p001568 Quercus lobata
QL11p001824 Quercus lobata
QL11p009111 Quercus lobata
RcHm_v2.0_Chr2g0095551 Rosa chinensis
RcHm_v2.0_Chr4g0397771 Rosa chinensis
Rhsim01G0110900 Rhododendron simsii
Rhsim05G0004100 Rhododendron simsii
Sabra06G0058800 Salix brachista
Sabra06G0108300 Salix brachista
Sabra18G0120200 Salix brachista
Sabra18G0127700 Salix brachista
SalBow5G1150 Salvia bowleyana
SalBow5G2577 Salvia bowleyana
SalBow6G1331 Salvia bowleyana
SalBow6G6066 Salvia bowleyana
Sc06g0001480 Simmondsia chinensis
Sc08g0009000 Simmondsia chinensis
Sed0014000 Sechium edule
Sed0021918 Sechium edule
Sed0023053 Sechium edule
SEGI_15389 Sequoiadendron giganteum
SEGI_25125 Sequoiadendron giganteum
SEGI_28628 Sequoiadendron giganteum
SEGI_36976 Sequoiadendron giganteum
SEGI_39604 Sequoiadendron giganteum
SGA_v2.0_scaffold21G09611 Striga asiatica
SGA_v2.0_scaffold21G09656 Striga asiatica
SGA_v2.0_scaffold318G48466 Striga asiatica
SGA_v2.0_scaffold31G12681 Striga asiatica
SHI03118 Sapria himalayana
SMO270G0069 Selaginella moellendorffii
Solyc05g047460.3 Solanum lycopersicum
Solyc07g016180.3 Solanum lycopersicum
Solyc07g042260.4 Solanum lycopersicum
Sopen00g003680 Solanum pennellii
Sopen05g027770 Solanum pennellii
Sopen07g021880 Solanum pennellii
Sp1g17120 Schrenkiella parvula
Sp6g23750 Schrenkiella parvula
TAR383G0470 Trochodendron aralioides
TAR383G0590 Trochodendron aralioides
TAR468G0010 Trochodendron aralioides
TAR569G0001 Trochodendron aralioides
TAR626G0198 Trochodendron aralioides
TAR629G2705 Trochodendron aralioides
TAR636G1235 Trochodendron aralioides
TAR636G2942 Trochodendron aralioides
THA.LOC104804594 Tarenaya hassleriana
THA.LOC104806547 Tarenaya hassleriana
THA.LOC104810986 Tarenaya hassleriana
THA.LOC104815075 Tarenaya hassleriana
THA.LOC104815316 Tarenaya hassleriana
THA.LOC104826578 Tarenaya hassleriana
Thecc.09G072200 Theobroma cacao
Thecc.09G194600 Theobroma cacao
Thhalv10006635m.g Eutrema salsugineum
Thhalv10012513m.g Eutrema salsugineum
TPR.G12710 Trifolium pratense
TPR.G25463 Trifolium pratense
TPR.G28498 Trifolium pratense
TWI32G0170 Tripterygium wilfordii
TWI32G0498 Tripterygium wilfordii
TWI34G0181 Tripterygium wilfordii
TWI34G0380 Tripterygium wilfordii
unitig_699.g19253 Utricularia gibba
unitig_8.g3546 Utricularia gibba
unitig_85.g27244 Utricularia gibba
vmacro17101 Vaccinium macrocarpon
vmacro20789 Vaccinium macrocarpon
VMungo0464G1129 Vigna mungo
VMungo1215G2123 Vigna mungo
VMungo1309G2180 Vigna mungo
Zm00001eb035640 Zea mays
Zm00001eb227100 Zea mays
Zm00001eb232120 Zea mays
Zm00001eb373970 Zea mays

User provided reference genes

Program Settings