Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p30080 Brassica napus
A03p03820 Brassica napus
A06p34410 Brassica napus
A07p37320 Brassica napus
A07p42230 Brassica napus
A09p64520 Brassica napus
Aa31LG11G2860 Aethionema arabicum
Aa31LG1G3740 Aethionema arabicum
Aa31LG2G9410 Aethionema arabicum
Aa31LG3G18170 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.1525 Anthoceros agrestis
Actinidia01921 Actinidia chinensis
Actinidia05596 Actinidia chinensis
Actinidia20630 Actinidia chinensis
Ah.09g226150 Amaranthus hybridus
Ah.14g089100 Amaranthus hybridus
AL1G22180 Arabidopsis lyrata
AL2G15150 Arabidopsis lyrata
AL6G18850 Arabidopsis lyrata
AL6G19010 Arabidopsis lyrata
AL6G34720 Arabidopsis lyrata
Aqoxy3G04353 Aquilegia oxysepala
Aqoxy4G01317 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.187ZZG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2JZ8I4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DK9749 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.DTUD60 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H36AZ5 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K87VEZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KMJM1R Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M6YII1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VCYL5Y Arachis hypogaea
AT1G11160 Arabidopsis thaliana
AT1G61210 Arabidopsis thaliana
AT5G08390 Arabidopsis thaliana
AT5G23430 Arabidopsis thaliana
ATR0124G021 Amborella trichopoda
Atru.chr10.1973 Acer truncatum
Atru.chr11.4 Acer truncatum
Atru.chr11.5 Acer truncatum
AUR62014751 Chenopodium quinoa
AUR62016929 Chenopodium quinoa
AUR62019629 Chenopodium quinoa
AUR62031663 Chenopodium quinoa
AUR62031664 Chenopodium quinoa
AUR62039594 Chenopodium quinoa
BcaB01g05601 Brassica carinata
BcaB01g05603 Brassica carinata
BcaB03g14373 Brassica carinata
BcaB03g14374 Brassica carinata
BcaB04g17459 Brassica carinata
BcaB04g19866 Brassica carinata
BcaB04g20327 Brassica carinata
BcaB08g37381 Brassica carinata
BcaB08g37382 Brassica carinata
BcaC02g10583 Brassica carinata
BcaNung03730 Brassica carinata
BcaNung03732 Brassica carinata
BcaNung03851 Brassica carinata
BolC1t03776H Brassica oleracea
BolC3t12963H Brassica oleracea
BolC4t24253H Brassica oleracea
BolC7t42904H Brassica oleracea
BolC7t44937H Brassica oleracea
BolC8t52371H Brassica oleracea
BolC8t52403H Brassica oleracea
BraA01t03139Z Brassica rapa
BraA03t09729Z Brassica rapa
BraA06t26370Z Brassica rapa
C01p38140 Brassica napus
C03p04300 Brassica napus
C04p27210 Brassica napus
C07p44130 Brassica napus
C09p20830 Brassica napus
CAN.G1705.7 Capsicum annuum
CAN.G419.27 Capsicum annuum
CAN.G711.4 Capsicum annuum
CANSAT35G0034 Cannabis sativa
CANSAT78G2015 Cannabis sativa
CARHR011370 Cardamine hirsuta
CARHR051460 Cardamine hirsuta
CARHR190080 Cardamine hirsuta
CARHR204650 Cardamine hirsuta
Carub.0001s1074 Capsella rubella
Carub.0002s0395 Capsella rubella
Carub.0006s0730 Capsella rubella
Carub.0006s2122 Capsella rubella
Ca_04129_v3 Cicer arietinum L.
Ca_10478_v3 Cicer arietinum L.
CBR_g12770 Chara braunii
CBR_g12772 Chara braunii
CBR_g12778 Chara braunii
Cc02_g12720 Coffea canephora
Cc11_g00320 Coffea canephora
CDE04G1074 Ceratophyllum demersum
CDE07G0012 Ceratophyllum demersum
CDE07G0731 Ceratophyllum demersum
CDE07G1205 Ceratophyllum demersum
CDE11G0047 Ceratophyllum demersum
Cfa000382 Carpinus fangiana
Ciclev10014112m.g Citrus clementina
Ciclev10014294m.g Citrus clementina
CiPaw.09G160700 Carya illinoinensis
CiPaw.10G121000 Carya illinoinensis
CiPaw.15G000200 Carya illinoinensis
ClCG03G005630 Citrullus lanatus
ClCG11G012830 Citrullus lanatus
COL.COLO4_31545 Corchorus olitorius
Cpa.g.c37714 Carica papaya
Cpa.g.sc248.8 Carica papaya
Cpa.g.sc27.95 Carica papaya
Cre03.g160450 Chlamydomonas reinhardtii
CsaV3_1G011890 Cucumis sativus L.
CsaV3_5G029230 Cucumis sativus L.
CSS0037079 Camellia sinensis var. sinensis
DCAR_023502 Daucus carota
DCAR_026869 Daucus carota
DCAR_028121 Daucus carota
Dinv11937 Davidia involucrata
Dinv11939 Davidia involucrata
Dinv17664 Davidia involucrata
Dinv39788 Davidia involucrata
Dinv40516 Davidia involucrata
Dinv40517 Davidia involucrata
Dinv40518 Davidia involucrata
Duzib052G1195 Durio zibethinus
Duzib160G0178 Durio zibethinus
Duzib235G0874 Durio zibethinus
Duzib248G0496 Durio zibethinus
ECA234G3027 Erigeron canadensis
ECA236G2616 Erigeron canadensis
ECA246G4868 Erigeron canadensis
EL10Ac8g20639 Beta vulgaris
EL10Ac9g23023 Beta vulgaris
Eucgr.E03367 Eucalyptus grandis
Eucgr.G02621 Eucalyptus grandis
FAN07G0208 Fragaria x ananassa
FAN11G1561 Fragaria x ananassa
FAN16G2812 Fragaria x ananassa
FAN21G0649 Fragaria x ananassa
FAN25G1355 Fragaria x ananassa
FvH4_3g04490 Fragaria vesca
FvH4_4g37370 Fragaria vesca
Glyma.05G000600 Glycine max
Glyma.07G192100 Glycine max
Glyma.13G184300 Glycine max
Glyma.13G244300 Glycine max
Glyma.15G069400 Glycine max
Glyma.19G000400 Glycine max
Gohir.A01G011900 Gossypium hirsutum
Gohir.A03G168450 Gossypium hirsutum
Gohir.A06G209500 Gossypium hirsutum
Gohir.A09G071300 Gossypium hirsutum
Gohir.A10G022500 Gossypium hirsutum
Gohir.A12G011500 Gossypium hirsutum
Gohir.D01G013100 Gossypium hirsutum
Gohir.D02G191600 Gossypium hirsutum
Gohir.D06G211500 Gossypium hirsutum
Gohir.D09G071100 Gossypium hirsutum
Gohir.D10G023300 Gossypium hirsutum
Gohir.D12G011900 Gossypium hirsutum
Gorai.002G014900 Gossypium raimondii
Gorai.005G214400 Gossypium raimondii
Gorai.006G086000 Gossypium raimondii
Gorai.008G011900 Gossypium raimondii
Gorai.010G254700 Gossypium raimondii
Gorai.011G024400 Gossypium raimondii
GSVIVG01002544001 Vitis vinifera
GSVIVG01004511001 Vitis vinifera
GSVIVG01004521001 Vitis vinifera
GSVIVG01009923001 Vitis vinifera
GSVIVG01034331001 Vitis vinifera
HanXRQChr04g0125681 Helianthus annuus
HanXRQChr16g0517881 Helianthus annuus
HanXRQChr17g0541111 Helianthus annuus
Haze_06544 Corylus avellana
Haze_17393 Corylus avellana
Hma1.2p1_0191F.1_g083430 Hydrangea macrophylla
Hma1.2p1_0835F.1_g225830 Hydrangea macrophylla
Hma1.2p1_3076F.1_g332400 Hydrangea macrophylla
HPP92_014417 Vanilla planifolia
HPP92_014423 Vanilla planifolia
Hund21263 Selenicereus undatus
Hund23644 Selenicereus undatus
Hund23645 Selenicereus undatus
Lalb_Chr04g0259101 Lupinus albus
Lalb_Chr10g0094661 Lupinus albus
Lalb_Chr18g0059851 Lupinus albus
Lalb_Chr20g0122131 Lupinus albus
Lalb_Chr20g0122141 Lupinus albus
Lalb_Chr20g0122151 Lupinus albus
Lj1A1210T52 Lonicera japonica
Lj2C283T9 Lonicera japonica
Lj2g0007379 Lotus japonicus
Lj3C843G8 Lonicera japonica
Lj6A705G42 Lonicera japonica
Lj6g0019145 Lotus japonicus
Lsat_1_v5_gn_1_114300 Lactuca sativa
Lsat_1_v5_gn_3_34581 Lactuca sativa
Lsat_1_v5_gn_3_81641 Lactuca sativa
Lsat_1_v5_gn_4_55580 Lactuca sativa
Lsat_1_v5_gn_4_57920 Lactuca sativa
Lsat_1_v5_gn_5_118781 Lactuca sativa
Lsat_1_v5_gn_6_73440 Lactuca sativa
Lsat_1_v5_gn_7_19941 Lactuca sativa
Lsat_1_v5_gn_8_142240 Lactuca sativa
Lsat_1_v5_gn_8_161641 Lactuca sativa
Lsat_1_v5_gn_8_47020 Lactuca sativa
Manes.04G060400 Manihot esculenta
Manes.16G023100 Manihot esculenta
Manes.17G042225 Manihot esculenta
Mapoly0006s0181 Marchantia polymorpha
MBI06_g17212_MAGBIO Magnolia biondii
MBI18_g32895_MAGBIO Magnolia biondii
MCO07G143 Micromonas commoda
MD05G1322800 Malus domestica
MD13G1000300 Malus domestica
MD16G1005500 Malus domestica
Medtr2g012630 Medicago truncatula
Medtr6g004040 Medicago truncatula
MELO3C002566.2 Cucumis melo
MELO3C011774.2 Cucumis melo
Migut.E00582 Erythranthe guttata
Migut.E00619 Erythranthe guttata
Migut.E00620 Erythranthe guttata
Migut.E00670 Erythranthe guttata
Migut.M01159 Erythranthe guttata
MSTRG.15897 Avicennia marina
MSTRG.2090 Avicennia marina
MSTRG.7323 Avicennia marina
Nitab4.5_0000129g0190 Nicotiana tabacum
Nitab4.5_0000526g0050 Nicotiana tabacum
Nitab4.5_0001820g0030 Nicotiana tabacum
Nitab4.5_0001983g0020 Nicotiana tabacum
Nitab4.5_0003114g0020 Nicotiana tabacum
Nitab4.5_0007390g0010 Nicotiana tabacum
Nn1g03954 Nelumbo nucifera
Nn4g24997 Nelumbo nucifera
Oeu006350.2 Olea europaea
Oeu027910.1 Olea europaea
Oeu027911.3 Olea europaea
Oeu031644.1 Olea europaea
Os01g0531300 Oryza sativa ssp. japonica
Os01g0780400 Oryza sativa ssp. japonica
Os04g0677700 Oryza sativa ssp. japonica
Os10g0494800 Oryza sativa ssp. japonica
Peaxi162Scf00329g00433 Petunia axillaris
Peaxi162Scf00612g00038 Petunia axillaris
Peaxi162Scf00655g00327 Petunia axillaris
PGR042G3830 Punica granatum
PGR142G0238 Punica granatum
PGSC0003DMG400022423 Solanum tuberosum
PGSC0003DMG400025310 Solanum tuberosum
PGSC0003DMG401021929 Solanum tuberosum
PGSC0003DMG402021929 Solanum tuberosum
Phvul.002G224100 Phaseolus vulgaris
Phvul.004G000600 Phaseolus vulgaris
Phvul.006G189900 Phaseolus vulgaris
Potri.008G002300 Populus trichocarpa
Potri.010G255400 Populus trichocarpa
Potri.011G045500 Populus trichocarpa
Pp3c20_7130 Physcomitrium patens
Pp3c24_18870 Physcomitrium patens
PRCOL_00000520 Prasinoderma coloniale
Prupe.1G352400 Prunus persica
Prupe.4G039800 Prunus persica
Psat1g053080 Pisum sativum
Psat1g207280 Pisum sativum
PSO063G1233 Papaver somniferum
PSO782G1309 Papaver somniferum
PSO832G3132 Papaver somniferum
QL01p000131 Quercus lobata
QL05p037029 Quercus lobata
RcHm_v2.0_Chr4g0447261 Rosa chinensis
RcHm_v2.0_Chr5g0006901 Rosa chinensis
RcHm_v2.0_Chr5g0007171 Rosa chinensis
RcHm_v2.0_Chr5g0007421 Rosa chinensis
Rhsim12G0090400 Rhododendron simsii
Rhsim13G0175400 Rhododendron simsii
Sabra08G0000200 Salix brachista
Sabra10G0198800 Salix brachista
Sabra11G0031600 Salix brachista
SalBow2G2962 Salvia bowleyana
Sc21g0003730 Simmondsia chinensis
Sc24g0000920 Simmondsia chinensis
Sed0014586 Sechium edule
Sed0022577 Sechium edule
Sed0024760 Sechium edule
SEGI_00036 Sequoiadendron giganteum
SEGI_13422 Sequoiadendron giganteum
SGA_v2.0_scaffold100G29664 Striga asiatica
SGA_v2.0_scaffold22G09742 Striga asiatica
SGA_v2.0_scaffold65G22159 Striga asiatica
SHI02000 Sapria himalayana
SHI02001 Sapria himalayana
SMO139G0135 Selaginella moellendorffii
SMO147G0186 Selaginella moellendorffii
Solyc02g021360.3 Solanum lycopersicum
Solyc02g078800.4 Solanum lycopersicum
Solyc04g008720.4 Solanum lycopersicum
Sopen02g005830 Solanum pennellii
Sopen02g023620 Solanum pennellii
Sopen04g003900 Solanum pennellii
Sp1g09830 Schrenkiella parvula
Sp2g03270 Schrenkiella parvula
Sp2g23730 Schrenkiella parvula
Sp6g34550 Schrenkiella parvula
TAR371G0444 Trochodendron aralioides
TAR627G0702 Trochodendron aralioides
TAR629G1460 Trochodendron aralioides
TAR633G2649 Trochodendron aralioides
THA.LOC104809555 Tarenaya hassleriana
THA.LOC104818387 Tarenaya hassleriana
THA.LOC104819093 Tarenaya hassleriana
Thecc.02G150900 Theobroma cacao
Thecc.06G195200 Theobroma cacao
Thhalv10005394m.g Eutrema salsugineum
Thhalv10006699m.g Eutrema salsugineum
Thhalv10012683m.g Eutrema salsugineum
Thhalv10023227m.g Eutrema salsugineum
Thhalv10023689m.g Eutrema salsugineum
Thhalv10024116m.g Eutrema salsugineum
TPR.G25229 Trifolium pratense
TPR.G36796 Trifolium pratense
TWI38G0991 Tripterygium wilfordii
TWI53G0877 Tripterygium wilfordii
TWI74G0274 Tripterygium wilfordii
unitig_27.g25295 Utricularia gibba
unitig_27.g25296 Utricularia gibba
unitig_46.g18631 Utricularia gibba
vmacro10905 Vaccinium macrocarpon
vmacro22269 Vaccinium macrocarpon
VMungo0251G0523 Vigna mungo
VMungo0464G1453 Vigna mungo
VMungo0540G0058 Vigna mungo
Zm00001eb044790 Zea mays
Zm00001eb054750 Zea mays
Zm00001eb066150 Zea mays
Zm00001eb283500 Zea mays
Zm00001eb356040 Zea mays
Zm00001eb369860 Zea mays
Zm00001eb433770 Zea mays

User provided reference genes

Program Settings