Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p29220 Brassica napus
A09p00300 Brassica napus
A10p27960 Brassica napus
Aa31LG3G17750 Aethionema arabicum
Aa31LG5G980 Aethionema arabicum
Aa31LG9G11200 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.5176 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3748 Anthoceros agrestis
Actinidia20038 Actinidia chinensis
Actinidia22175 Actinidia chinensis
Actinidia27561 Actinidia chinensis
Ah.05g179470 Amaranthus hybridus
Ah.06g191040 Amaranthus hybridus
Ah.12g052720 Amaranthus hybridus
AL5G21480 Arabidopsis lyrata
AL6G19630 Arabidopsis lyrata
AL6G19640 Arabidopsis lyrata
AL6G45010 Arabidopsis lyrata
AL6G52430 Arabidopsis lyrata
Aqoxy5G02360 Aquilegia oxysepala
Aqoxy6G00313 Aquilegia oxysepala
Aqoxy7G00073 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.18SJMB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.9W5UDX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JQ1PN1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LMT1Q9 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QJF382 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VRDQ1B Arachis hypogaea
AT4G00980 Arabidopsis thaliana
AT4G10920 Arabidopsis thaliana
AT5G09240 Arabidopsis thaliana
AT5G09250 Arabidopsis thaliana
ATR0584G028 Amborella trichopoda
ATR0602G135 Amborella trichopoda
Atru.chr4.998 Acer truncatum
Atru.chr5.680 Acer truncatum
AUR62000517 Chenopodium quinoa
AUR62004504 Chenopodium quinoa
AUR62006860 Chenopodium quinoa
AUR62010864 Chenopodium quinoa
AUR62019863 Chenopodium quinoa
AUR62023450 Chenopodium quinoa
BcaB01g02728 Brassica carinata
BcaB05g21562 Brassica carinata
BcaB08g37223 Brassica carinata
BcaC01g04652 Brassica carinata
BcaC03g13246 Brassica carinata
BolC2t06339H Brassica oleracea
BolC3t15839H Brassica oleracea
BolC9t53028H Brassica oleracea
BolC9t59566H Brassica oleracea
BraA02t04973Z Brassica rapa
BraA03t12117Z Brassica rapa
BraA09t35757Z Brassica rapa
C02p03780 Brassica napus
C03p35280 Brassica napus
C09p00940 Brassica napus
C09p68070 Brassica napus
C09p68100 Brassica napus
C09p68130 Brassica napus
C09p68160 Brassica napus
CAN.G23.2 Capsicum annuum
CAN.G567.15 Capsicum annuum
CAN.G567.16 Capsicum annuum
CANSAT01G0551 Cannabis sativa
CANSAT21G0525 Cannabis sativa
CANSAT56G4277 Cannabis sativa
CARHR204180 Cardamine hirsuta
CARHR255690 Cardamine hirsuta
CARHR267120 Cardamine hirsuta
Carub.0006s0780 Capsella rubella
Carub.0006s2966 Capsella rubella
Ca_09513_v3 Cicer arietinum L.
Ca_16983_v3 Cicer arietinum L.
Ca_17466_v3 Cicer arietinum L.
Ca_30063_v3 Cicer arietinum L.
CBR_g19202 Chara braunii
CBR_g6578 Chara braunii
Cc02_g39460 Coffea canephora
Cc08_g05970 Coffea canephora
Cc08_g16290 Coffea canephora
CDE06G2024 Ceratophyllum demersum
CDE10G1213 Ceratophyllum demersum
Cfa003792 Carpinus fangiana
Cfa011982 Carpinus fangiana
Cfa025138 Carpinus fangiana
Ciclev10002914m.g Citrus clementina
Ciclev10020119m.g Citrus clementina
Ciclev10023952m.g Citrus clementina
CiPaw.04G079500 Carya illinoinensis
CiPaw.11G119000 Carya illinoinensis
ClCG04G001940 Citrullus lanatus
ClCG04G001990 Citrullus lanatus
ClCG07G011480 Citrullus lanatus
COL.COLO4_06276 Corchorus olitorius
COL.COLO4_10729 Corchorus olitorius
COL.COLO4_35809 Corchorus olitorius
Cpa.g.sc37.10 Carica papaya
Cpa.g.sc634.3 Carica papaya
Cpa.g.sc96.34 Carica papaya
Cre07.g325722 Chlamydomonas reinhardtii
CsaV3_3G007990 Cucumis sativus L.
CsaV3_4G006740 Cucumis sativus L.
CsaV3_4G030720 Cucumis sativus L.
CSS0024595 Camellia sinensis var. sinensis
CSS0033415 Camellia sinensis var. sinensis
CSS0033755 Camellia sinensis var. sinensis
CSS0050045 Camellia sinensis var. sinensis
DCAR_005395 Daucus carota
DCAR_018011 Daucus carota
Dinv04452 Davidia involucrata
Dinv37513 Davidia involucrata
Dinv38820 Davidia involucrata
Duzib068G1189 Durio zibethinus
Duzib264G0580 Durio zibethinus
ECA233G0532 Erigeron canadensis
ECA236G4907 Erigeron canadensis
ECA246G2653 Erigeron canadensis
EL10Ac1g00257 Beta vulgaris
EL10Ac4g09624 Beta vulgaris
EL10Ac5g12940 Beta vulgaris
Eucgr.D01760 Eucalyptus grandis
Eucgr.E00048 Eucalyptus grandis
Eucgr.E00884 Eucalyptus grandis
Eucgr.I00122 Eucalyptus grandis
FAN04G1520 Fragaria x ananassa
FAN08G1879 Fragaria x ananassa
FAN10G3316 Fragaria x ananassa
FAN10G4194 Fragaria x ananassa
FAN13G2042 Fragaria x ananassa
FAN18G0531 Fragaria x ananassa
FAN18G4029 Fragaria x ananassa
FAN19G0758 Fragaria x ananassa
FAN23G3065 Fragaria x ananassa
FAN26G0961 Fragaria x ananassa
FAN28G1280 Fragaria x ananassa
FvH4_1g24880 Fragaria vesca
FvH4_5g04940 Fragaria vesca
FvH4_7g16761 Fragaria vesca
Glyma.03G258000 Glycine max
Glyma.04G210100 Glycine max
Glyma.05G218100 Glycine max
Glyma.06G155900 Glycine max
Glyma.08G024200 Glycine max
Glyma.19G256500 Glycine max
Gohir.A02G099400 Gossypium hirsutum
Gohir.A09G005400 Gossypium hirsutum
Gohir.A11G057500 Gossypium hirsutum
Gohir.D03G084300 Gossypium hirsutum
Gohir.D09G004700 Gossypium hirsutum
Gohir.D11G061700 Gossypium hirsutum
Gorai.003G078300 Gossypium raimondii
Gorai.006G006300 Gossypium raimondii
Gorai.007G066500 Gossypium raimondii
Gorai.007G109200 Gossypium raimondii
GSVIVG01019561001 Vitis vinifera
GSVIVG01022341001 Vitis vinifera
HanXRQChr06g0170781 Helianthus annuus
HanXRQChr10g0313221 Helianthus annuus
HanXRQChr15g0469041 Helianthus annuus
HanXRQChr17g0534971 Helianthus annuus
Haze_09091 Corylus avellana
Haze_15668 Corylus avellana
Haze_25372 Corylus avellana
Hma1.2p1_0236F.1_g099210 Hydrangea macrophylla
Hma1.2p1_0236F.1_g099213 Hydrangea macrophylla
Hma1.2p1_0390F.1_g142700 Hydrangea macrophylla
Hma1.2p1_0440F.1_g153470 Hydrangea macrophylla
Hma1.2p1_1985F.1_g310060 Hydrangea macrophylla
Hma1.2p1_3248F.1_g334400 Hydrangea macrophylla
HPP92_005661 Vanilla planifolia
HPP92_027159 Vanilla planifolia
Hund07234 Selenicereus undatus
Hund27191 Selenicereus undatus
Lalb_Chr08g0238181 Lupinus albus
Lalb_Chr09g0332241 Lupinus albus
Lalb_Chr15g0076301 Lupinus albus
Lj1g0006055 Lotus japonicus
Lj1g0012003 Lotus japonicus
Lj1g0012362 Lotus japonicus
Lj2A163G58 Lonicera japonica
Lj4g0003743 Lotus japonicus
Lj9A599G37 Lonicera japonica
Lsat_1_v5_gn_3_11280 Lactuca sativa
Lsat_1_v5_gn_5_69420 Lactuca sativa
Manes.02G008100 Manihot esculenta
Manes.05G022100 Manihot esculenta
Manes.12G159100 Manihot esculenta
Mapoly0004s0058 Marchantia polymorpha
Mapoly0004s0059 Marchantia polymorpha
Mapoly0109s0054 Marchantia polymorpha
MBI03_g28481_MAGBIO Magnolia biondii
MBI06_g35207_MAGBIO Magnolia biondii
MBI08_g12692_MAGBIO Magnolia biondii
MBI19_g04953_MAGBIO Magnolia biondii
MCO10G200 Micromonas commoda
MD01G1006400 Malus domestica
MD01G1082500 Malus domestica
MD06G1110000 Malus domestica
MD14G1131000 Malus domestica
MD15G1135200 Malus domestica
Medtr0021s0240 Medicago truncatula
Medtr3g096690 Medicago truncatula
Medtr8g099650 Medicago truncatula
Medtr8g445550 Medicago truncatula
Medtr8g445560 Medicago truncatula
MELO3C006017.2 Cucumis melo
MELO3C008937.2 Cucumis melo
MELO3C016275.2 Cucumis melo
MELO3C032031.2 Cucumis melo
MELO3C033395.2 Cucumis melo
Migut.A00620 Erythranthe guttata
Migut.A01201 Erythranthe guttata
Migut.A01202 Erythranthe guttata
Migut.A01204 Erythranthe guttata
Migut.A01207 Erythranthe guttata
Migut.B01883 Erythranthe guttata
Migut.J01137 Erythranthe guttata
Migut.L00273 Erythranthe guttata
MSTRG.17350 Avicennia marina
MSTRG.23484 Avicennia marina
MSTRG.26916 Avicennia marina
Nitab4.5_0000188g0350 Nicotiana tabacum
Nitab4.5_0000258g0190 Nicotiana tabacum
Nitab4.5_0000798g0110 Nicotiana tabacum
Nitab4.5_0001310g0060 Nicotiana tabacum
Nitab4.5_0004281g0020 Nicotiana tabacum
Nitab4.5_0004506g0040 Nicotiana tabacum
Nitab4.5_0008496g0020 Nicotiana tabacum
Nitab4.5_0009491g0050 Nicotiana tabacum
Nitab4.5_0012992g0010 Nicotiana tabacum
Nn1g08969 Nelumbo nucifera
Nn3g18977 Nelumbo nucifera
Nn5g28431 Nelumbo nucifera
Oeu037857.1 Olea europaea
Oeu038552.2 Olea europaea
Oeu039333.1 Olea europaea
Oeu055033.2 Olea europaea
Os01g0706000 Oryza sativa ssp. japonica
Os02g0553600 Oryza sativa ssp. japonica
Peaxi162Scf00074g00634 Petunia axillaris
Peaxi162Scf00121g00210 Petunia axillaris
PGR042G3002 Punica granatum
PGR119G2499 Punica granatum
PGSC0003DMG400008674 Solanum tuberosum
PGSC0003DMG400012264 Solanum tuberosum
Phvul.002G300000 Phaseolus vulgaris
Phvul.006G113800 Phaseolus vulgaris
Phvul.009G154400 Phaseolus vulgaris
Potri.001G089400 Populus trichocarpa
Potri.002G171900 Populus trichocarpa
Potri.007G101100 Populus trichocarpa
Pp3c27_5970 Physcomitrium patens
Pp3c7_24660 Physcomitrium patens
PRCOL_00005157 Prasinoderma coloniale
Prupe.2G187700 Prunus persica
Prupe.2G189900 Prunus persica
Prupe.2G191700 Prunus persica
Prupe.4G275800 Prunus persica
Prupe.5G122900 Prunus persica
Psat0s1094g0080 Pisum sativum
Psat0s1094g0120 Pisum sativum
Psat3g002280 Pisum sativum
Psat3g002320 Pisum sativum
Psat5g060280 Pisum sativum
Psat7g024920 Pisum sativum
Psat7g024960 Pisum sativum
PSO063G0572 Papaver somniferum
PSO135G1027 Papaver somniferum
PSO170G2682 Papaver somniferum
PSO384G4805 Papaver somniferum
PSO528G0001 Papaver somniferum
QL02p030019 Quercus lobata
QL04p060477 Quercus lobata
QL10p041230 Quercus lobata
QL10p041495 Quercus lobata
RcHm_v2.0_Chr1g0359981 Rosa chinensis
RcHm_v2.0_Chr2g0122541 Rosa chinensis
RcHm_v2.0_Chr7g0194131 Rosa chinensis
Rhsim01G0173700 Rhododendron simsii
Rhsim02G0246500 Rhododendron simsii
Rhsim10G0124000 Rhododendron simsii
Sabra01G0065400 Salix brachista
Sabra01G0065500 Salix brachista
Sabra02G0140800 Salix brachista
Sabra05G0055700 Salix brachista
Sabra07G0083400 Salix brachista
SalBow1G7974 Salvia bowleyana
SalBow7G2453 Salvia bowleyana
Sc01g0002620 Simmondsia chinensis
Sc15g0002380 Simmondsia chinensis
Sc16g0009540 Simmondsia chinensis
Sc22g0004890 Simmondsia chinensis
Sed0002663 Sechium edule
Sed0013045 Sechium edule
Sed0020938 Sechium edule
SEGI_18499 Sequoiadendron giganteum
SEGI_38324 Sequoiadendron giganteum
SGA_v2.0_scaffold143G35720 Striga asiatica
SGA_v2.0_scaffold305G47995 Striga asiatica
SGA_v2.0_scaffold5G03026 Striga asiatica
SHI13110 Sapria himalayana
SMO116G0432 Selaginella moellendorffii
SMO353G0044 Selaginella moellendorffii
Solyc02g061790.4 Solanum lycopersicum
Solyc08g082580.3 Solanum lycopersicum
Sopen02g012830 Solanum pennellii
Sopen08g030830 Solanum pennellii
Sp6g01170 Schrenkiella parvula
Sp6g06580 Schrenkiella parvula
Sp6g34060 Schrenkiella parvula
TAR076G0001 Trochodendron aralioides
TAR375G1146 Trochodendron aralioides
TAR376G0469 Trochodendron aralioides
TAR628G0709 Trochodendron aralioides
TAR629G1262 Trochodendron aralioides
THA.LOC104801367 Tarenaya hassleriana
THA.LOC104806442 Tarenaya hassleriana
THA.LOC104818417 Tarenaya hassleriana
Thecc.01G136800 Theobroma cacao
Thecc.03G300800 Theobroma cacao
Thhalv10014921m.g Eutrema salsugineum
Thhalv10029021m.g Eutrema salsugineum
Thhalv10029236m.g Eutrema salsugineum
TPR.G20603 Trifolium pratense
TPR.G29353 Trifolium pratense
TPR.G3382 Trifolium pratense
TPR.G4688 Trifolium pratense
TWI31G0409 Tripterygium wilfordii
TWI31G0820 Tripterygium wilfordii
TWI79G0390 Tripterygium wilfordii
TWI81G0658 Tripterygium wilfordii
unitig_37.g12356 Utricularia gibba
unitig_748.g7694 Utricularia gibba
vmacro11337 Vaccinium macrocarpon
vmacro12666 Vaccinium macrocarpon
vmacro12667 Vaccinium macrocarpon
vmacro12668 Vaccinium macrocarpon
vmacro12748 Vaccinium macrocarpon
VMungo0251G0223 Vigna mungo
VMungo0540G1992 Vigna mungo
VMungo0540G2283 Vigna mungo
VMungo1309G2558 Vigna mungo
Zm00001eb155390 Zea mays
Zm00001eb243600 Zea mays
Zm00001eb361130 Zea mays

User provided reference genes

Program Settings