Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p13380 Brassica napus
A03p23910 Brassica napus
A05p03510 Brassica napus
A07p24430 Brassica napus
Aa31LG1G24790 Aethionema arabicum
Aa31LG2G2640 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.753 Anthoceros agrestis
Actinidia11003 Actinidia chinensis
Actinidia11103 Actinidia chinensis
Actinidia17155 Actinidia chinensis
Ah.01g002030 Amaranthus hybridus
Ah.01g013220 Amaranthus hybridus
AL2G23210 Arabidopsis lyrata
AL4G41660 Arabidopsis lyrata
AL5G40930 Arabidopsis lyrata
Aqoxy2G02801 Aquilegia oxysepala
Aqoxy2G02998 Aquilegia oxysepala
Aqoxy3G04191 Aquilegia oxysepala
Aqoxy4G00060 Aquilegia oxysepala
Aqoxy5G00294 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.31PAIA Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AM4HSV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EM7V1A Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.I6VHAV Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.S3CS6Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UIG78U Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VP710X Arachis hypogaea
AT1G65840 Arabidopsis thaliana
AT2G43020 Arabidopsis thaliana
AT3G59050 Arabidopsis thaliana
ATR0618G099 Amborella trichopoda
ATR1098G053 Amborella trichopoda
Atru.chr1.1978 Acer truncatum
Atru.chr6.2010 Acer truncatum
AUR62004754 Chenopodium quinoa
AUR62015169 Chenopodium quinoa
AUR62017621 Chenopodium quinoa
AUR62037500 Chenopodium quinoa
BcaB02g07487 Brassica carinata
BcaB05g24137 Brassica carinata
BcaB06g29277 Brassica carinata
BcaC01g05268 Brassica carinata
BcaC02g07210 Brassica carinata
BcaC02g12421 Brassica carinata
BcaC03g14722 Brassica carinata
BcaC08g44956 Brassica carinata
BcaNung06524 Brassica carinata
BNapus_Darmor_BZH_scaffold_64p00120 Brassica napus
BolC2t08301H Brassica oleracea
BolC3t15218H Brassica oleracea
BolC3t17308H Brassica oleracea
BolC4t22048H Brassica oleracea
BolC4t28503H Brassica oleracea
BolC6t37748H Brassica oleracea
BraA02t06397Z Brassica rapa
BraA03t11606Z Brassica rapa
BraA04t18704Z Brassica rapa
BraA05t19337Z Brassica rapa
BraA07t30090Z Brassica rapa
C02p21660 Brassica napus
C03p28530 Brassica napus
C03p50160 Brassica napus
C04p04090 Brassica napus
C04p70030 Brassica napus
C06p25860 Brassica napus
CAN.G1067.1 Capsicum annuum
CAN.G11.38 Capsicum annuum
CAN.G1250.2 Capsicum annuum
CAN.G1664.3 Capsicum annuum
CAN.G490.8 Capsicum annuum
CAN.G809.98 Capsicum annuum
CAN.G819.3 Capsicum annuum
CANSAT64G2537 Cannabis sativa
CARHR057700 Cardamine hirsuta
CARHR138080 Cardamine hirsuta
CARHR169460 Cardamine hirsuta
Carub.0002s1172 Capsella rubella
Carub.0004s2550 Capsella rubella
Carub.0005s2581 Capsella rubella
Ca_06232_v3 Cicer arietinum L.
Ca_14581_v3 Cicer arietinum L.
CBR_g57870 Chara braunii
CBR_g58179 Chara braunii
CBR_g59123 Chara braunii
Cc05_g00340 Coffea canephora
Cc07_g12680 Coffea canephora
Cc07_g12690 Coffea canephora
CDE03G0273 Ceratophyllum demersum
CDE04G2570 Ceratophyllum demersum
CDE08G0540 Ceratophyllum demersum
CDE11G0360 Ceratophyllum demersum
Cfa007742 Carpinus fangiana
Ciclev10011567m.g Citrus clementina
Ciclev10031239m.g Citrus clementina
CiPaw.03G078400 Carya illinoinensis
CiPaw.03G197800 Carya illinoinensis
CiPaw.04G050100 Carya illinoinensis
CiPaw.04G136200 Carya illinoinensis
ClCG07G010820 Citrullus lanatus
ClCG11G016630 Citrullus lanatus
COL.COLO4_13433 Corchorus olitorius
COL.COLO4_29896 Corchorus olitorius
Cpa.g.c47265 Carica papaya
Cpa.g.sc50.126 Carica papaya
Cpa.g.sc50.127 Carica papaya
Cpa.g.sc904.4 Carica papaya
Cre10.g447767 Chlamydomonas reinhardtii
CsaV3_4G007490 Cucumis sativus L.
CsaV3_4G032140 Cucumis sativus L.
CSS0002135 Camellia sinensis var. sinensis
CSS0020181 Camellia sinensis var. sinensis
CSS0035621 Camellia sinensis var. sinensis
DCAR_003397 Daucus carota
DCAR_009832 Daucus carota
DCAR_022995 Daucus carota
Dinv02648 Davidia involucrata
Dinv19087 Davidia involucrata
Duzib138G0513 Durio zibethinus
Duzib147G0025 Durio zibethinus
ECA232G3861 Erigeron canadensis
ECA234G2656 Erigeron canadensis
ECA246G3460 Erigeron canadensis
EL10Ac4g08909 Beta vulgaris
EL10Ac9g22876 Beta vulgaris
Eucgr.A02044 Eucalyptus grandis
Eucgr.J01648 Eucalyptus grandis
FAN02G4177 Fragaria x ananassa
FAN05G1039 Fragaria x ananassa
FAN09G3755 Fragaria x ananassa
FAN14G3809 Fragaria x ananassa
FAN23G0841 Fragaria x ananassa
FAN26G2136 Fragaria x ananassa
FAN28G0505 Fragaria x ananassa
FvH4_1g27430 Fragaria vesca
FvH4_6g38950 Fragaria vesca
Glyma.02G240000 Glycine max
Glyma.02G282000 Glycine max
Glyma.08G303800 Glycine max
Glyma.11G209027 Glycine max
Glyma.14G032300 Glycine max
Glyma.14G209400 Glycine max
Glyma.18G045100 Glycine max
Glyma.18G116300 Glycine max
Gohir.A08G037950 Gossypium hirsutum
Gohir.A12G092200 Gossypium hirsutum
Gohir.D08G048200 Gossypium hirsutum
Gohir.D12G092000 Gossypium hirsutum
Gorai.004G047700 Gossypium raimondii
Gorai.008G099600 Gossypium raimondii
GSVIVG01020490001 Vitis vinifera
GSVIVG01020812001 Vitis vinifera
GSVIVG01026304001 Vitis vinifera
GSVIVG01029406001 Vitis vinifera
HanXRQChr01g0028681 Helianthus annuus
HanXRQChr15g0490271 Helianthus annuus
HanXRQChr17g0540941 Helianthus annuus
Haze_13629 Corylus avellana
Haze_14334 Corylus avellana
Hma1.2p1_0583F.1_g183070 Hydrangea macrophylla
Hma1.2p1_0583F.1_g183071 Hydrangea macrophylla
Hma1.2p1_2537F.1_g324090 Hydrangea macrophylla
HPP92_011051 Vanilla planifolia
HPP92_011052 Vanilla planifolia
HPP92_011082 Vanilla planifolia
HPP92_017721 Vanilla planifolia
HPP92_025844 Vanilla planifolia
Hund08345 Selenicereus undatus
Hund22214 Selenicereus undatus
Lalb_Chr04g0251541 Lupinus albus
Lalb_Chr10g0106451 Lupinus albus
Lalb_Chr17g0348101 Lupinus albus
Lalb_Chr18g0053781 Lupinus albus
Lj1A522T61 Lonicera japonica
Lj1C523T2 Lonicera japonica
Lj2A510G34 Lonicera japonica
Lj3C1012G19 Lonicera japonica
Lj6g0004244 Lotus japonicus
Lj6g0026993 Lotus japonicus
LjContig00049g0017622 Lotus japonicus
Lsat_1_v5_gn_3_133680 Lactuca sativa
Lsat_1_v5_gn_3_36200 Lactuca sativa
Lsat_1_v5_gn_4_136961 Lactuca sativa
Lsat_1_v5_gn_4_26940 Lactuca sativa
Manes.01G124500 Manihot esculenta
Manes.02G090500 Manihot esculenta
Mapoly0001s0321 Marchantia polymorpha
MBI02_g29842_MAGBIO Magnolia biondii
MBI03_g24040_MAGBIO Magnolia biondii
MBI03_g44018_MAGBIO Magnolia biondii
MBI03_g44019_MAGBIO Magnolia biondii
MBI18_g11236_MAGBIO Magnolia biondii
MCO07G509 Micromonas commoda
MD09G1145900 Malus domestica
MD09G1280300 Malus domestica
MD17G1132400 Malus domestica
MD17G1287500 Malus domestica
Medtr3g064370 Medicago truncatula
Medtr3g449620 Medicago truncatula
Medtr5g087920 Medicago truncatula
Medtr5g090300 Medicago truncatula
MELO3C016193.2 Cucumis melo
MELO3C026384.2 Cucumis melo
Migut.K00981 Erythranthe guttata
Migut.M00107 Erythranthe guttata
MSTRG.14109 Avicennia marina
MSTRG.14884 Avicennia marina
MSTRG.15627 Avicennia marina
MSTRG.3666 Avicennia marina
Nitab4.5_0000091g0280 Nicotiana tabacum
Nitab4.5_0000483g0140 Nicotiana tabacum
Nitab4.5_0001374g0220 Nicotiana tabacum
Nitab4.5_0001843g0100 Nicotiana tabacum
Nitab4.5_0002015g0070 Nicotiana tabacum
Nitab4.5_0003412g0030 Nicotiana tabacum
Nitab4.5_0004862g0070 Nicotiana tabacum
Nitab4.5_0007665g0030 Nicotiana tabacum
Nn3g20447 Nelumbo nucifera
Nn4g24826 Nelumbo nucifera
Nn4g26618 Nelumbo nucifera
Oeu012371.1 Olea europaea
Oeu018193.1 Olea europaea
Oeu022920.1 Olea europaea
Oeu056843.1 Olea europaea
Os04g0623300 Oryza sativa ssp. japonica
Os04g0671200 Oryza sativa ssp. japonica
Os04g0671300 Oryza sativa ssp. japonica
Peaxi162Scf00047g02337 Petunia axillaris
Peaxi162Scf00344g02015 Petunia axillaris
Peaxi162Scf00351g00911 Petunia axillaris
Peaxi162Scf00521g00029 Petunia axillaris
Peaxi162Scf00637g00114 Petunia axillaris
PGR042G0985 Punica granatum
PGR042G1527 Punica granatum
PGSC0003DMG400015925 Solanum tuberosum
PGSC0003DMG400019718 Solanum tuberosum
PGSC0003DMG400028810 Solanum tuberosum
PGSC0003DMG401024074 Solanum tuberosum
Phvul.006G028601 Phaseolus vulgaris
Phvul.006G085900 Phaseolus vulgaris
Phvul.008G196900 Phaseolus vulgaris
Phvul.008G241700 Phaseolus vulgaris
Phvul.L001677 Phaseolus vulgaris
Potri.002G055300 Populus trichocarpa
Potri.004G075800 Populus trichocarpa
Potri.005G207300 Populus trichocarpa
Potri.017G144001 Populus trichocarpa
Pp3c15_18820 Physcomitrium patens
Pp3c9_8100 Physcomitrium patens
Pp3c9_8130 Physcomitrium patens
Pp3s34_620 Physcomitrium patens
PRCOL_00001602 Prasinoderma coloniale
Prupe.3G013800 Prunus persica
Prupe.3G179900 Prunus persica
Psat0s1132g0120 Pisum sativum
Psat0s1719g0080 Pisum sativum
Psat0s2499g0080 Pisum sativum
Psat2g018000 Pisum sativum
Psat5g194080 Pisum sativum
PSO063G1412 Papaver somniferum
PSO541G2331 Papaver somniferum
PSO541G2373 Papaver somniferum
PSO675G0781 Papaver somniferum
PSO675G9028 Papaver somniferum
PSO782G0642 Papaver somniferum
QL02p063999 Quercus lobata
QL04p060254 Quercus lobata
RcHm_v2.0_Chr2g0152531 Rosa chinensis
RcHm_v2.0_Chr2g0152541 Rosa chinensis
RcHm_v2.0_Chr3g0488611 Rosa chinensis
Rhsim06G0137500 Rhododendron simsii
Rhsim10G0186000 Rhododendron simsii
Rhsim10G0186100 Rhododendron simsii
Sabra02G0044800 Salix brachista
Sabra04G0050500 Salix brachista
Sabra05G0157800 Salix brachista
Sabra05G0157900 Salix brachista
Sabra17G0120300 Salix brachista
SalBow5G2234 Salvia bowleyana
SalBow5G4219 Salvia bowleyana
SalBow7G0178 Salvia bowleyana
Sc06g0003040 Simmondsia chinensis
Sc15g0002330 Simmondsia chinensis
Sed0016141 Sechium edule
Sed0016888 Sechium edule
Sed0020549 Sechium edule
SEGI_28325 Sequoiadendron giganteum
SEGI_29415 Sequoiadendron giganteum
SGA_v2.0_scaffold115G32034 Striga asiatica
SGA_v2.0_scaffold181G39731 Striga asiatica
SGA_v2.0_scaffold45G17102 Striga asiatica
SGA_v2.0_scaffold73G24451 Striga asiatica
SHI10528 Sapria himalayana
SMO119G0288 Selaginella moellendorffii
SMO329G0079 Selaginella moellendorffii
SMO351G0092 Selaginella moellendorffii
SMO367G0720 Selaginella moellendorffii
Solyc02g081390.3 Solanum lycopersicum
Solyc03g031880.3 Solanum lycopersicum
Solyc07g043590.3 Solanum lycopersicum
Solyc12g006370.3 Solanum lycopersicum
Sopen02g026020 Solanum pennellii
Sopen03g005750 Solanum pennellii
Sopen07g023160 Solanum pennellii
Sopen12g002320 Solanum pennellii
Sp4g25150 Schrenkiella parvula
Sp5g03930 Schrenkiella parvula
Sp5g20840 Schrenkiella parvula
TAR374G1607 Trochodendron aralioides
TAR622G0682 Trochodendron aralioides
TAR622G1250 Trochodendron aralioides
TAR624G1132 Trochodendron aralioides
TAR626G0113 Trochodendron aralioides
THA.LOC104803407 Tarenaya hassleriana
THA.LOC104805661 Tarenaya hassleriana
THA.LOC104821208 Tarenaya hassleriana
THA.LOC104822137 Tarenaya hassleriana
Thecc.01G165300 Theobroma cacao
Thhalv10005954m.g Eutrema salsugineum
Thhalv10016573m.g Eutrema salsugineum
Thhalv10018447m.g Eutrema salsugineum
TPR.G11006 Trifolium pratense
TPR.G14740 Trifolium pratense
TPR.G14765 Trifolium pratense
TPR.G22789 Trifolium pratense
TPR.G37363 Trifolium pratense
TPR.G8774 Trifolium pratense
TWI14G0659 Tripterygium wilfordii
TWI23G0316 Tripterygium wilfordii
TWI53G0856 Tripterygium wilfordii
TWI74G0697 Tripterygium wilfordii
unitig_32.g10733 Utricularia gibba
unitig_699.g19634 Utricularia gibba
unitig_85.g27321 Utricularia gibba
vmacro12342 Vaccinium macrocarpon
vmacro20457 Vaccinium macrocarpon
VMungo0540G1108 Vigna mungo
VMungo0540G2033 Vigna mungo
VMungo0647G0709 Vigna mungo
VMungo0647G0846 Vigna mungo
VMungo0647G1549 Vigna mungo
Zm00001eb066680 Zea mays
Zm00001eb070310 Zea mays
Zm00001eb097420 Zea mays
Zm00001eb273170 Zea mays
Zm00001eb283140 Zea mays
Zm00001eb295270 Zea mays
Zm00001eb431200 Zea mays
Zm00001eb433420 Zea mays

User provided reference genes

Program Settings