Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p24870 Brassica napus
A05p04860 Brassica napus
A07p07340 Brassica napus
A09p12990 Brassica napus
Aa31LG1G26270 Aethionema arabicum
Aa31LG2G13170 Aethionema arabicum
Aa31LG8G11300 Aethionema arabicum
Aa31LG9G15110 Aethionema arabicum
Actinidia25911 Actinidia chinensis
Actinidia30072 Actinidia chinensis
Actinidia37599 Actinidia chinensis
Ah.01g019780 Amaranthus hybridus
Ah.08g213030 Amaranthus hybridus
Ah.08g214340 Amaranthus hybridus
Ah.12g053970 Amaranthus hybridus
AL3G40630 Arabidopsis lyrata
AL4G43780 Arabidopsis lyrata
AL7G37650 Arabidopsis lyrata
Aqoxy3G02646 Aquilegia oxysepala
Aqoxy6G00744 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.B16MMT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.IMTD05 Arachis hypogaea
AT2G44730 Arabidopsis thaliana
AT3G24860 Arabidopsis thaliana
AT4G17060 Arabidopsis thaliana
ATR0584G228 Amborella trichopoda
ATR0665G280 Amborella trichopoda
ATR0684G037 Amborella trichopoda
Atru.chr5.102 Acer truncatum
Atru.chr9.1204 Acer truncatum
AUR62007169 Chenopodium quinoa
AUR62016671 Chenopodium quinoa
AUR62018837 Chenopodium quinoa
BcaB02g08851 Brassica carinata
BcaB04g18385 Brassica carinata
BcaB04g18388 Brassica carinata
BcaB06g26703 Brassica carinata
BcaC01g05198 Brassica carinata
BcaC01g05199 Brassica carinata
BcaC01g05200 Brassica carinata
BcaC01g05201 Brassica carinata
BcaC02g12279 Brassica carinata
BcaC02g12281 Brassica carinata
BcaC04g22778 Brassica carinata
BcaC06g35764 Brassica carinata
BcaC07g38034 Brassica carinata
BcaNung00128 Brassica carinata
BolC1t02491H Brassica oleracea
BolC3t15314H Brassica oleracea
BolC4t22199H Brassica oleracea
BolC7t41584H Brassica oleracea
BolC9t54446H Brassica oleracea
BraA01t01951Z Brassica rapa
BraA03t11694Z Brassica rapa
BraA05t19461Z Brassica rapa
BraA07t28523Z Brassica rapa
BraA08t33268Z Brassica rapa
C03p29660 Brassica napus
C04p05690 Brassica napus
C07p11120 Brassica napus
CAN.G756.42 Capsicum annuum
CAN.G771.80 Capsicum annuum
CAN.G845.21 Capsicum annuum
CANSAT01G2463 Cannabis sativa
CANSAT25G3641 Cannabis sativa
CARHR101280 Cardamine hirsuta
CARHR139940 Cardamine hirsuta
CARHR223640 Cardamine hirsuta
Carub.0003s2527 Capsella rubella
Carub.0004s2728 Capsella rubella
Carub.0007s2434 Capsella rubella
Ca_08044_v3 Cicer arietinum L.
Ca_21569_v3 Cicer arietinum L.
Ca_24775_v3 Cicer arietinum L.
Cc01_g16960 Coffea canephora
Cc02_g25370 Coffea canephora
Cc08_g11310 Coffea canephora
CDE03G0443 Ceratophyllum demersum
CDE04G2863 Ceratophyllum demersum
CDE06G2708 Ceratophyllum demersum
Cfa010928 Carpinus fangiana
Cfa011046 Carpinus fangiana
Ciclev10020863m.g Citrus clementina
Ciclev10024664m.g Citrus clementina
CiPaw.04G105100 Carya illinoinensis
CiPaw.13G024400 Carya illinoinensis
CiPaw.14G018500 Carya illinoinensis
ClCG09G008940 Citrullus lanatus
COL.COLO4_06677 Corchorus olitorius
COL.COLO4_15678 Corchorus olitorius
COL.COLO4_18392 Corchorus olitorius
Cpa.g.sc41.83 Carica papaya
Cpa.g.sc8.146 Carica papaya
CsaV3_3G010680 Cucumis sativus L.
CsaV3_7G026050 Cucumis sativus L.
CSS0013278 Camellia sinensis var. sinensis
CSS0016463 Camellia sinensis var. sinensis
CSS0017459 Camellia sinensis var. sinensis
CSS0022915 Camellia sinensis var. sinensis
CSS0023471 Camellia sinensis var. sinensis
CSS0031983 Camellia sinensis var. sinensis
DCAR_000526 Daucus carota
DCAR_008328 Daucus carota
DCAR_029489 Daucus carota
Dinv12688 Davidia involucrata
Dinv19197 Davidia involucrata
Dinv25137 Davidia involucrata
Dinv28878 Davidia involucrata
Dinv43604 Davidia involucrata
Dinv44041 Davidia involucrata
Duzib068G1299 Durio zibethinus
Duzib133G0474 Durio zibethinus
Duzib205G1889 Durio zibethinus
Duzib268G0102 Durio zibethinus
ECA234G3114 Erigeron canadensis
ECA236G2084 Erigeron canadensis
ECA240G4769 Erigeron canadensis
ECA246G4246 Erigeron canadensis
ECA246G4732 Erigeron canadensis
ECA248G2444 Erigeron canadensis
EL10Ac5g12265 Beta vulgaris
EL10Ac7g17847 Beta vulgaris
EL10Ac9g21782 Beta vulgaris
Eucgr.E01658 Eucalyptus grandis
FAN01G1421 Fragaria x ananassa
FAN03G2199 Fragaria x ananassa
FAN04G0383 Fragaria x ananassa
FAN04G0762 Fragaria x ananassa
FAN05G2379 Fragaria x ananassa
FAN06G0367 Fragaria x ananassa
FAN06G0760 Fragaria x ananassa
FAN06G1067 Fragaria x ananassa
FAN10G3061 Fragaria x ananassa
FAN10G3306 Fragaria x ananassa
FAN13G0437 Fragaria x ananassa
FAN15G2677 Fragaria x ananassa
FAN18G4122 Fragaria x ananassa
FAN24G3156 Fragaria x ananassa
FAN27G2317 Fragaria x ananassa
FvH4_2g18920 Fragaria vesca
FvH4_5g20390 Fragaria vesca
FvH4_5g20450 Fragaria vesca
FvH4_7g09240 Fragaria vesca
Glyma.03G081500 Glycine max
Glyma.07G254502 Glycine max
Glyma.08G051800 Glycine max
Glyma.09G245300 Glycine max
Glyma.16G093600 Glycine max
Glyma.18G248000 Glycine max
Glyma.19G118351 Glycine max
Gohir.A07G201000 Gossypium hirsutum
Gohir.A08G139800 Gossypium hirsutum
Gohir.A08G162900 Gossypium hirsutum
Gohir.A11G137800 Gossypium hirsutum
Gohir.A12G212500 Gossypium hirsutum
Gohir.D07G207300 Gossypium hirsutum
Gohir.D08G160800 Gossypium hirsutum
Gohir.D11G144600 Gossypium hirsutum
Gohir.D12G215000 Gossypium hirsutum
Gorai.001G233700 Gossypium raimondii
Gorai.004G167100 Gossypium raimondii
Gorai.007G154900 Gossypium raimondii
Gorai.008G230600 Gossypium raimondii
GSVIVG01003683001 Vitis vinifera
GSVIVG01028683001 Vitis vinifera
HanXRQChr01g0016011 Helianthus annuus
HanXRQChr01g0017711 Helianthus annuus
HanXRQChr03g0089721 Helianthus annuus
HanXRQChr04g0108101 Helianthus annuus
HanXRQChr11g0344011 Helianthus annuus
HanXRQChr14g0443931 Helianthus annuus
HanXRQChr17g0533971 Helianthus annuus
Haze_02877 Corylus avellana
Haze_03013 Corylus avellana
Haze_03020 Corylus avellana
Haze_20318 Corylus avellana
Hma1.2p1_0551F.1_g177465 Hydrangea macrophylla
Hma1.2p1_0551F.1_g177490 Hydrangea macrophylla
Hma1.2p1_0632F.1_g192450 Hydrangea macrophylla
Hma1.2p1_0840F.1_g226660 Hydrangea macrophylla
Hma1.2p1_3159F.1_g333430 Hydrangea macrophylla
HPP92_012963 Vanilla planifolia
HPP92_013100 Vanilla planifolia
HPP92_016779 Vanilla planifolia
Lalb_Chr07g0177461 Lupinus albus
Lalb_Chr07g0194101 Lupinus albus
Lalb_Chr07g0195291 Lupinus albus
Lalb_Chr12g0210451 Lupinus albus
Lalb_Chr13g0290701 Lupinus albus
Lj1g0024989 Lotus japonicus
Lj3g0020286 Lotus japonicus
Lj4g0024312 Lotus japonicus
Lj8P277T40 Lonicera japonica
Lj9P478T51 Lonicera japonica
Lsat_1_v5_gn_1_84200 Lactuca sativa
Lsat_1_v5_gn_1_84280 Lactuca sativa
Lsat_1_v5_gn_3_15221 Lactuca sativa
Lsat_1_v5_gn_3_15241 Lactuca sativa
Lsat_1_v5_gn_4_40001 Lactuca sativa
Lsat_1_v5_gn_6_94181 Lactuca sativa
Lsat_1_v5_gn_8_89861 Lactuca sativa
Manes.02G045500 Manihot esculenta
Manes.05G056800 Manihot esculenta
Manes.13G047200 Manihot esculenta
MBI04_g13859_MAGBIO Magnolia biondii
MD02G1219900 Malus domestica
MD04G1055300 Malus domestica
MD05G1174500 Malus domestica
MD06G1046900 Malus domestica
MD07G1097000 Malus domestica
MD07G1097300 Malus domestica
MD10G1163600 Malus domestica
Medtr4g117990 Medicago truncatula
Medtr5g017500 Medicago truncatula
Medtr7g081190 Medicago truncatula
MELO3C006287.2 Cucumis melo
MELO3C012580.2 Cucumis melo
MELO3C021031.2 Cucumis melo
Migut.D02521 Erythranthe guttata
Migut.N00619 Erythranthe guttata
Migut.N01727 Erythranthe guttata
MSTRG.10274 Avicennia marina
MSTRG.26753 Avicennia marina
MSTRG.4940 Avicennia marina
Nitab4.5_0000185g0200 Nicotiana tabacum
Nitab4.5_0000563g0150 Nicotiana tabacum
Nitab4.5_0001564g0050 Nicotiana tabacum
Nitab4.5_0002223g0020 Nicotiana tabacum
Nitab4.5_0006594g0090 Nicotiana tabacum
Nitab4.5_0011684g0010 Nicotiana tabacum
Nn1g00752 Nelumbo nucifera
Nn1g05420 Nelumbo nucifera
Oeu000045.1 Olea europaea
Oeu019262.1 Olea europaea
Oeu024368.1 Olea europaea
Oeu026349.1 Olea europaea
Oeu037430.1 Olea europaea
Oeu060056.1 Olea europaea
Os04g0543500 Oryza sativa ssp. japonica
Os08g0484700 Oryza sativa ssp. japonica
Os10g0564200 Oryza sativa ssp. japonica
Peaxi162Scf00102g00086 Petunia axillaris
Peaxi162Scf00517g00062 Petunia axillaris
Peaxi162Scf00853g00433 Petunia axillaris
PGR031G2290 Punica granatum
PGR042G1541 Punica granatum
PGR044G0054 Punica granatum
PGSC0003DMG400001696 Solanum tuberosum
PGSC0003DMG400020098 Solanum tuberosum
PGSC0003DMG400020508 Solanum tuberosum
Phvul.003G097500 Phaseolus vulgaris
Phvul.008G049300 Phaseolus vulgaris
Phvul.010G018700 Phaseolus vulgaris
Potri.001G150600 Populus trichocarpa
Potri.002G139500 Populus trichocarpa
Potri.002G243300 Populus trichocarpa
Potri.003G083800 Populus trichocarpa
Potri.014G051200 Populus trichocarpa
Prupe.2G121200 Prunus persica
Prupe.5G055100 Prunus persica
Prupe.8G201900 Prunus persica
Psat2g166960 Pisum sativum
Psat3g099720 Pisum sativum
Psat4g031080 Pisum sativum
PSO063G3234 Papaver somniferum
PSO541G5009 Papaver somniferum
PSO781G0031 Papaver somniferum
PSO782G1295 Papaver somniferum
QL04p028592 Quercus lobata
QL04p028713 Quercus lobata
QL09p054007 Quercus lobata
QL12p008687 Quercus lobata
RcHm_v2.0_Chr1g0345291 Rosa chinensis
RcHm_v2.0_Chr1g0345771 Rosa chinensis
RcHm_v2.0_Chr6g0284711 Rosa chinensis
RcHm_v2.0_Chr6g0286391 Rosa chinensis
RcHm_v2.0_Chr7g0205651 Rosa chinensis
RcHm_v2.0_Chr7g0205761 Rosa chinensis
Rhsim01G0141600 Rhododendron simsii
Rhsim07G0136200 Rhododendron simsii
Rhsim13G0045500 Rhododendron simsii
Sabra01G0120400 Salix brachista
Sabra02G0150600 Salix brachista
Sabra02G0185200 Salix brachista
Sabra03G0054300 Salix brachista
Sabra14G0036200 Salix brachista
Sabra14G0038300 Salix brachista
SalBow1G1933 Salvia bowleyana
SalBow4G2533 Salvia bowleyana
SalBow7G3666 Salvia bowleyana
Sc01g0007970 Simmondsia chinensis
Sc07g0009050 Simmondsia chinensis
Sc14g0001740 Simmondsia chinensis
Sed0005949 Sechium edule
Sed0011776 Sechium edule
Sed0021214 Sechium edule
SEGI_08721 Sequoiadendron giganteum
SEGI_35524 Sequoiadendron giganteum
SGA_v2.0_scaffold113G31714 Striga asiatica
SGA_v2.0_scaffold142G35665 Striga asiatica
SGA_v2.0_scaffold143G35746 Striga asiatica
SGA_v2.0_scaffold143G35747 Striga asiatica
SGA_v2.0_scaffold191G40486 Striga asiatica
SGA_v2.0_scaffold288G47234 Striga asiatica
SGA_v2.0_scaffold332G48948 Striga asiatica
SGA_v2.0_scaffold37G14762 Striga asiatica
SGA_v2.0_scaffold3G01644 Striga asiatica
SGA_v2.0_scaffold50G18423 Striga asiatica
SGA_v2.0_scaffold50G18424 Striga asiatica
SGA_v2.0_scaffold77G25265 Striga asiatica
SGA_v2.0_scaffold94G28622 Striga asiatica
SHI13627 Sapria himalayana
Solyc01g088820.2 Solanum lycopersicum
Solyc06g083430.1 Solanum lycopersicum
Solyc08g007170.1 Solanum lycopersicum
Sopen01g035660 Solanum pennellii
Sopen06g034790 Solanum pennellii
Sopen08g003120 Solanum pennellii
Sp3g22590 Schrenkiella parvula
Sp4g26780 Schrenkiella parvula
SpUn0027_0070 Schrenkiella parvula
TAR362G0174 Trochodendron aralioides
TAR375G1013 Trochodendron aralioides
TAR629G0579 Trochodendron aralioides
TAR636G3009 Trochodendron aralioides
THA.LOC104802500 Tarenaya hassleriana
THA.LOC104804614 Tarenaya hassleriana
THA.LOC104812737 Tarenaya hassleriana
Thecc.01G224700 Theobroma cacao
Thecc.01G400100 Theobroma cacao
Thecc.03G239800 Theobroma cacao
Thhalv10001488m.g Eutrema salsugineum
Thhalv10002843m.g Eutrema salsugineum
Thhalv10025276m.g Eutrema salsugineum
TPR.G21280 Trifolium pratense
TPR.G28130 Trifolium pratense
TWI14G1354 Tripterygium wilfordii
TWI15G0283 Tripterygium wilfordii
TWI15G0285 Tripterygium wilfordii
TWI15G1115 Tripterygium wilfordii
TWI36G1002 Tripterygium wilfordii
TWI59G0138 Tripterygium wilfordii
TWI60G1396 Tripterygium wilfordii
unitig_0.g2758 Utricularia gibba
unitig_748.g7119 Utricularia gibba
unitig_748.g7120 Utricularia gibba
vmacro21925 Vaccinium macrocarpon
VMungo0251G0160 Vigna mungo
VMungo0251G1003 Vigna mungo
VMungo0331G1598 Vigna mungo
VMungo1215G0008 Vigna mungo
VMungo1215G1720 Vigna mungo
VMungo1309G0465 Vigna mungo
VMungo1383G0933 Vigna mungo
Zm00001eb023870 Zea mays
Zm00001eb033570 Zea mays
Zm00001eb075080 Zea mays
Zm00001eb085990 Zea mays
Zm00001eb199110 Zea mays
Zm00001eb309810 Zea mays
Zm00001eb390910 Zea mays
Zm00001eb427790 Zea mays

User provided reference genes

Program Settings