Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p44140 Brassica napus
A03p47560 Brassica napus
A04p10860 Brassica napus
A06p32860 Brassica napus
A09p09270 Brassica napus
A09p65340 Brassica napus
Aa31LG1G16110 Aethionema arabicum
Aa31LG4G18320 Aethionema arabicum
Aa31LG9G17440 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.4165 Anthoceros agrestis
Actinidia00368 Actinidia chinensis
Actinidia11980 Actinidia chinensis
Actinidia11981 Actinidia chinensis
Actinidia17209 Actinidia chinensis
Actinidia36430 Actinidia chinensis
Ah.02g125390 Amaranthus hybridus
Ah.10g032380 Amaranthus hybridus
AL5G29870 Arabidopsis lyrata
AL5G29880 Arabidopsis lyrata
AL7G46500 Arabidopsis lyrata
AL8G43740 Arabidopsis lyrata
Aqoxy3G00034 Aquilegia oxysepala
Aqoxy3G00461 Aquilegia oxysepala
Aqoxy6G02604 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.18RJMF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6736TM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K22RCE Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RLIZ91 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T9WNCM Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.Y85K9F Arachis hypogaea
AT3G49860 Arabidopsis thaliana
AT3G49870 Arabidopsis thaliana
AT5G37680 Arabidopsis thaliana
AT5G67560 Arabidopsis thaliana
ATR0753G156 Amborella trichopoda
ATR1153G098 Amborella trichopoda
Atru.chr1.2002 Acer truncatum
Atru.chr3.1014 Acer truncatum
Atru.chr5.2334 Acer truncatum
AUR62004012 Chenopodium quinoa
AUR62018219 Chenopodium quinoa
AUR62037795 Chenopodium quinoa
AUR62040235 Chenopodium quinoa
BcaB02g09913 Brassica carinata
BcaB04g20044 Brassica carinata
BcaB04g20045 Brassica carinata
BcaB06g27120 Brassica carinata
BcaC02g09604 Brassica carinata
BcaC04g23235 Brassica carinata
BolC2t12504H Brassica oleracea
BolC3t18224H Brassica oleracea
BolC4t26034H Brassica oleracea
BolC7t45076H Brassica oleracea
BolC8t52467H Brassica oleracea
BolC9t53978H Brassica oleracea
BraA02t09337Z Brassica rapa
BraA03t13870Z Brassica rapa
BraA04t16752Z Brassica rapa
BraA06t26218Z Brassica rapa
BraA09t36580Z Brassica rapa
BraA09t41880Z Brassica rapa
C02p64400 Brassica napus
C03p59610 Brassica napus
C04p44610 Brassica napus
C07p45550 Brassica napus
C09p10830 Brassica napus
CAN.G1075.40 Capsicum annuum
CAN.G222.38 Capsicum annuum
CAN.G278.16 Capsicum annuum
CAN.G775.8 Capsicum annuum
CANSAT47G0002 Cannabis sativa
CANSAT56G3880 Cannabis sativa
CARHR158950 Cardamine hirsuta
CARHR215150 Cardamine hirsuta
CARHR280030 Cardamine hirsuta
Carub.0005s1622 Capsella rubella
Carub.0005s1623 Capsella rubella
Carub.0007s2937 Capsella rubella
Carub.0007s3284 Capsella rubella
Carub.0008s2691 Capsella rubella
Ca_05831_v3 Cicer arietinum L.
Ca_24690_v3 Cicer arietinum L.
CBR_g41810 Chara braunii
Cc07_g07120 Coffea canephora
Cc07_g13360 Coffea canephora
CDE04G2659 Ceratophyllum demersum
CDE04G3354 Ceratophyllum demersum
CDE05G0296 Ceratophyllum demersum
CDE07G1993 Ceratophyllum demersum
Cfa004134 Carpinus fangiana
Cfa004665 Carpinus fangiana
Cfa007800 Carpinus fangiana
Cfa025259 Carpinus fangiana
Ciclev10012882m.g Citrus clementina
Ciclev10026580m.g Citrus clementina
Ciclev10029604m.g Citrus clementina
CiPaw.01G004200 Carya illinoinensis
CiPaw.02G002100 Carya illinoinensis
CiPaw.02G002300 Carya illinoinensis
CiPaw.03G072700 Carya illinoinensis
CiPaw.04G047700 Carya illinoinensis
CiPaw.05G018300 Carya illinoinensis
CiPaw.06G165400 Carya illinoinensis
ClCG01G008790 Citrullus lanatus
ClCG02G006870 Citrullus lanatus
COL.COLO4_11580 Corchorus olitorius
COL.COLO4_32510 Corchorus olitorius
COL.COLO4_37038 Corchorus olitorius
Cpa.g.sc106.43 Carica papaya
Cpa.g.sc116.62 Carica papaya
Cpa.g.sc6.13 Carica papaya
Cre17.g708250 Chlamydomonas reinhardtii
CsaV3_5G024180 Cucumis sativus L.
CsaV3_7G007790 Cucumis sativus L.
CSS0000278 Camellia sinensis var. sinensis
CSS0003161 Camellia sinensis var. sinensis
CSS0007244 Camellia sinensis var. sinensis
CSS0012425 Camellia sinensis var. sinensis
CSS0024721 Camellia sinensis var. sinensis
CSS0028020 Camellia sinensis var. sinensis
CSS0039778 Camellia sinensis var. sinensis
CSS0048650 Camellia sinensis var. sinensis
Dinv04046 Davidia involucrata
Dinv15810 Davidia involucrata
Dinv26935 Davidia involucrata
Dinv28195 Davidia involucrata
Duzib052G0536 Durio zibethinus
Duzib132G0239 Durio zibethinus
Duzib138G1753 Durio zibethinus
Duzib147G1294 Durio zibethinus
Duzib187G1004 Durio zibethinus
Duzib264G1021 Durio zibethinus
ECA232G4347 Erigeron canadensis
ECA240G3734 Erigeron canadensis
EL10Ac2g03179 Beta vulgaris
EL10Ac6g15615 Beta vulgaris
Eucgr.I00699 Eucalyptus grandis
Eucgr.J01603 Eucalyptus grandis
FAN19G0907 Fragaria x ananassa
FAN19G1936 Fragaria x ananassa
FAN20G1205 Fragaria x ananassa
FAN23G0657 Fragaria x ananassa
FAN23G2160 Fragaria x ananassa
FAN24G0579 Fragaria x ananassa
FAN26G1285 Fragaria x ananassa
FAN26G1862 Fragaria x ananassa
FAN28G1585 Fragaria x ananassa
FAN28G2912 Fragaria x ananassa
FvH4_1g17760 Fragaria vesca
FvH4_1g30280 Fragaria vesca
FvH4_2g03780 Fragaria vesca
Glyma.01G194500 Glycine max
Glyma.02G244500 Glycine max
Glyma.05G105800 Glycine max
Glyma.11G047400 Glycine max
Glyma.14G214600 Glycine max
Glyma.20G134700 Glycine max
Gohir.A02G151300 Gossypium hirsutum
Gohir.A03G182200 Gossypium hirsutum
Gohir.A08G035900 Gossypium hirsutum
Gohir.A11G214700 Gossypium hirsutum
Gohir.A13G046900 Gossypium hirsutum
Gohir.D02G203900 Gossypium hirsutum
Gohir.D03G029000 Gossypium hirsutum
Gohir.D08G046600 Gossypium hirsutum
Gohir.D11G208700 Gossypium hirsutum
Gohir.D13G042800 Gossypium hirsutum
Gorai.003G030700 Gossypium raimondii
Gorai.004G045800 Gossypium raimondii
Gorai.005G231000 Gossypium raimondii
Gorai.007G223900 Gossypium raimondii
Gorai.013G050700 Gossypium raimondii
GSVIVG01002075001 Vitis vinifera
GSVIVG01019246001 Vitis vinifera
GSVIVG01030794001 Vitis vinifera
GSVIVG01037822001 Vitis vinifera
HanXRQChr11g0323121 Helianthus annuus
HanXRQChr12g0373021 Helianthus annuus
HanXRQChr12g0379921 Helianthus annuus
HanXRQChr15g0472601 Helianthus annuus
Haze_10263 Corylus avellana
Haze_14272 Corylus avellana
Haze_15280 Corylus avellana
Haze_27449 Corylus avellana
Hma1.2p1_0158F.1_g070120 Hydrangea macrophylla
Hma1.2p1_0852F.1_g228540 Hydrangea macrophylla
Hma1.2p1_1059F.1_g253010 Hydrangea macrophylla
HPP92_009645 Vanilla planifolia
HPP92_020410 Vanilla planifolia
HPP92_024896 Vanilla planifolia
Hund13954 Selenicereus undatus
Hund16402 Selenicereus undatus
Lalb_Chr05g0213721 Lupinus albus
Lalb_Chr09g0323621 Lupinus albus
Lalb_Chr10g0104321 Lupinus albus
Lalb_Chr17g0346081 Lupinus albus
Lj2A520T28 Lonicera japonica
Lj2A522T70 Lonicera japonica
Lj2g0007542 Lotus japonicus
Lj4C163T8 Lonicera japonica
Lj4C262G3 Lonicera japonica
LjContig00141g0016340 Lotus japonicus
Lsat_1_v5_gn_2_82701 Lactuca sativa
Lsat_1_v5_gn_3_64421 Lactuca sativa
Lsat_1_v5_gn_3_86821 Lactuca sativa
Lsat_1_v5_gn_4_161601 Lactuca sativa
Manes.01G118800 Manihot esculenta
Manes.02G077500 Manihot esculenta
Manes.07G059700 Manihot esculenta
Manes.10G083600 Manihot esculenta
Manes.12G115000 Manihot esculenta
Manes.13G111400 Manihot esculenta
Mapoly0129s0042 Marchantia polymorpha
MBI16_g23888_MAGBIO Magnolia biondii
MCO02G499 Micromonas commoda
MCO07G126 Micromonas commoda
MD02G1186600 Malus domestica
MD05G1101000 Malus domestica
MD09G1271300 Malus domestica
MD15G1297800 Malus domestica
MD17G1269600 Malus domestica
Medtr4g026950 Medicago truncatula
Medtr5g015370 Medicago truncatula
Medtr5g078090 Medicago truncatula
MELO3C018523.2 Cucumis melo
MELO3C022865.2 Cucumis melo
Migut.H00345 Erythranthe guttata
MSTRG.23669 Avicennia marina
MSTRG.2621 Avicennia marina
MSTRG.2817 Avicennia marina
Nitab4.5_0000036g0060 Nicotiana tabacum
Nitab4.5_0000142g0090 Nicotiana tabacum
Nitab4.5_0000201g0140 Nicotiana tabacum
Nitab4.5_0001116g0040 Nicotiana tabacum
Nitab4.5_0001417g0080 Nicotiana tabacum
Nitab4.5_0004025g0040 Nicotiana tabacum
Nitab4.5_0004679g0070 Nicotiana tabacum
Nitab4.5_0006893g0030 Nicotiana tabacum
Nitab4.5_0008923g0030 Nicotiana tabacum
Nitab4.5_0010836g0010 Nicotiana tabacum
Nitab4.5_0013633g0010 Nicotiana tabacum
Nn1g04549 Nelumbo nucifera
Nn4g24301 Nelumbo nucifera
Nn5g30597 Nelumbo nucifera
Oeu013323.1 Olea europaea
Oeu014249.1 Olea europaea
Oeu017638.1 Olea europaea
Oeu032423.2 Olea europaea
Oeu054202.1 Olea europaea
Oeu060838.1 Olea europaea
Oeu060839.1 Olea europaea
Os02g0732500 Oryza sativa ssp. japonica
Os03g0200800 Oryza sativa ssp. japonica
Peaxi162Scf00118g01922 Petunia axillaris
Peaxi162Scf00305g00034 Petunia axillaris
Peaxi162Scf00548g00510 Petunia axillaris
Peaxi162Scf01350g00125 Petunia axillaris
PGR042G1230 Punica granatum
PGR042G3039 Punica granatum
PGR102G0589 Punica granatum
PGSC0003DMG400003319 Solanum tuberosum
PGSC0003DMG400009092 Solanum tuberosum
PGSC0003DMG400015679 Solanum tuberosum
PGSC0003DMG400021443 Solanum tuberosum
Phvul.002G010400 Phaseolus vulgaris
Phvul.003G234800 Phaseolus vulgaris
Phvul.007G045600 Phaseolus vulgaris
Phvul.008G236400 Phaseolus vulgaris
Potri.001G293100 Populus trichocarpa
Potri.004G086200 Populus trichocarpa
Potri.009G087400 Populus trichocarpa
Potri.017G130500 Populus trichocarpa
Pp3c26_13440 Physcomitrium patens
Pp3c5_11090 Physcomitrium patens
Pp3c6_23830 Physcomitrium patens
PRCOL_00002112 Prasinoderma coloniale
PRCOL_00003756 Prasinoderma coloniale
Prupe.3G017200 Prunus persica
Prupe.6G220000 Prunus persica
Prupe.8G145900 Prunus persica
Psat2g046720 Pisum sativum
Psat2g171640 Pisum sativum
PSO017G1040 Papaver somniferum
PSO170G0616 Papaver somniferum
PSO541G4177 Papaver somniferum
PSO675G6874 Papaver somniferum
QL02p058443 Quercus lobata
QL06p039555 Quercus lobata
QL10p014264 Quercus lobata
QL11p030368 Quercus lobata
QL11p030375 Quercus lobata
RcHm_v2.0_Chr2g0108091 Rosa chinensis
RcHm_v2.0_Chr2g0108181 Rosa chinensis
RcHm_v2.0_Chr3g0491081 Rosa chinensis
RcHm_v2.0_Chr6g0252801 Rosa chinensis
Rhsim08G0019000 Rhododendron simsii
Rhsim10G0099400 Rhododendron simsii
Rhsim10G0177800 Rhododendron simsii
Rhsim11G0152700 Rhododendron simsii
RhsimUnG0124400 Rhododendron simsii
RhsimUnG0150500 Rhododendron simsii
Sabra04G0057100 Salix brachista
Sabra09G0067600 Salix brachista
Sabra16G0183100 Salix brachista
SalBow3G2437 Salvia bowleyana
Sc03g0002400 Simmondsia chinensis
Sc16g0002860 Simmondsia chinensis
Sed0002779 Sechium edule
Sed0012765 Sechium edule
Sed0020774 Sechium edule
Sed0027258 Sechium edule
SEGI_30605 Sequoiadendron giganteum
SEGI_41345 Sequoiadendron giganteum
SGA_v2.0_scaffold45G17166 Striga asiatica
SGA_v2.0_scaffold72G24072 Striga asiatica
SMO145G0214 Selaginella moellendorffii
SMO331G0049 Selaginella moellendorffii
Solyc02g064640.4 Solanum lycopersicum
Solyc02g092330.3 Solanum lycopersicum
Solyc03g043960.3 Solanum lycopersicum
Solyc11g011040.2 Solanum lycopersicum
Sopen02g014740 Solanum pennellii
Sopen02g036890 Solanum pennellii
Sopen03g007780 Solanum pennellii
Sopen11g005810 Solanum pennellii
Sp2g29090 Schrenkiella parvula
Sp5g12240 Schrenkiella parvula
Sp7g04390 Schrenkiella parvula
TAR374G1703 Trochodendron aralioides
TAR376G0173 Trochodendron aralioides
TAR381G1139 Trochodendron aralioides
TAR622G1084 Trochodendron aralioides
TAR625G0098 Trochodendron aralioides
TAR628G0907 Trochodendron aralioides
TAR629G0044 Trochodendron aralioides
THA.LOC104805625 Tarenaya hassleriana
THA.LOC104821205 Tarenaya hassleriana
THA.LOC104823839 Tarenaya hassleriana
THA.LOC104827644 Tarenaya hassleriana
Thecc.01G073000 Theobroma cacao
Thecc.02G117600 Theobroma cacao
Thecc.04G146200 Theobroma cacao
Thhalv10004984m.g Eutrema salsugineum
Thhalv10010752m.g Eutrema salsugineum
Thhalv10022966m.g Eutrema salsugineum
Thhalv10023067m.g Eutrema salsugineum
Thhalv10023195m.g Eutrema salsugineum
Thhalv10027950m.g Eutrema salsugineum
TPR.G21853 Trifolium pratense
TPR.G8272 Trifolium pratense
TWI09G0457 Tripterygium wilfordii
TWI53G0296 Tripterygium wilfordii
TWI53G0369 Tripterygium wilfordii
TWI73G0833 Tripterygium wilfordii
TWI77G0565 Tripterygium wilfordii
vmacro05411 Vaccinium macrocarpon
vmacro07699 Vaccinium macrocarpon
vmacro07700 Vaccinium macrocarpon
vmacro07703 Vaccinium macrocarpon
vmacro07705 Vaccinium macrocarpon
vmacro18529 Vaccinium macrocarpon
vmacro23378 Vaccinium macrocarpon
VMungo0251G0777 Vigna mungo
VMungo0647G0079 Vigna mungo
VMungo0720G0925 Vigna mungo
VMungo1215G1432 Vigna mungo
Zm00001eb007810 Zea mays
Zm00001eb190150 Zea mays
Zm00001eb253690 Zea mays
Zm00001eb400810 Zea mays

User provided reference genes

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