Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p32800 Brassica napus
A06p09180 Brassica napus
A06p43660 Brassica napus
A08p32820 Brassica napus
A09p27150 Brassica napus
A09p63830 Brassica napus
Aa31LG1G2160 Aethionema arabicum
Aa31LG1G2170 Aethionema arabicum
Aa31LG2G7730 Aethionema arabicum
Aa31LG6G4720 Aethionema arabicum
Aa31LG6G4920 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_369.564 Anthoceros agrestis
Actinidia02070 Actinidia chinensis
Actinidia05243 Actinidia chinensis
Actinidia14486 Actinidia chinensis
Actinidia22840 Actinidia chinensis
Actinidia27426 Actinidia chinensis
Ah.02g116290 Amaranthus hybridus
Ah.02g128660 Amaranthus hybridus
Ah.05g175150 Amaranthus hybridus
Ah.12g058010 Amaranthus hybridus
AL1G23790 Arabidopsis lyrata
AL5G11600 Arabidopsis lyrata
AL6G46790 Arabidopsis lyrata
AL7G30660 Arabidopsis lyrata
Aqoxy7G00581 Aquilegia oxysepala
Aqoxy7G01022 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.35EBDI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6E31ZC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.B46IVF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GJ81JU Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PISI89 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PT5JT8 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.T0P46V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UBW3XN Arachis hypogaea
AT1G12450 Arabidopsis thaliana
AT2G02370 Arabidopsis thaliana
AT4G12000 Arabidopsis thaliana
AT4G22850 Arabidopsis thaliana
ATR0693G083 Amborella trichopoda
ATR0757G029 Amborella trichopoda
Atru.chr5.327 Acer truncatum
Atru.chr6.19 Acer truncatum
Atru.chr6.26 Acer truncatum
Atru.chr9.1475 Acer truncatum
AUR62004232 Chenopodium quinoa
AUR62010538 Chenopodium quinoa
AUR62013616 Chenopodium quinoa
AUR62017357 Chenopodium quinoa
AUR62032514 Chenopodium quinoa
AUR62042821 Chenopodium quinoa
BcaB01g01700 Brassica carinata
BcaB03g13186 Brassica carinata
BcaB07g30341 Brassica carinata
BcaB08g34273 Brassica carinata
BcaB08g34274 Brassica carinata
BcaB08g34275 Brassica carinata
BcaC03g17133 Brassica carinata
BcaC04g21185 Brassica carinata
BcaC05g25189 Brassica carinata
BcaC06g31236 Brassica carinata
BcaC06g34056 Brassica carinata
BcaC07g41697 Brassica carinata
BcaC09g51069 Brassica carinata
BcaNung01021 Brassica carinata
BolC1t01670H Brassica oleracea
BolC2t11128H Brassica oleracea
BolC5t29817H Brassica oleracea
BolC7t43831H Brassica oleracea
BolC8t49172H Brassica oleracea
BolC8t52275H Brassica oleracea
BolC9t56291H Brassica oleracea
BraA02t08298Z Brassica rapa
BraA06t24104Z Brassica rapa
BraA06t27248Z Brassica rapa
BraA08t35205Z Brassica rapa
BraA09t38284Z Brassica rapa
BraA09t41729Z Brassica rapa
C02p50490 Brassica napus
C05p10760 Brassica napus
C07p33200 Brassica napus
C08p15440 Brassica napus
C08p47330 Brassica napus
C09p34480 Brassica napus
CAN.G1379.31 Capsicum annuum
CAN.G630.50 Capsicum annuum
CANSAT01G0998 Cannabis sativa
CANSAT35G0068 Cannabis sativa
CARHR012740 Cardamine hirsuta
CARHR144960 Cardamine hirsuta
CARHR229880 Cardamine hirsuta
CARHR254280 Cardamine hirsuta
CARHR283560 Cardamine hirsuta
Carub.0001s1215 Capsella rubella
Carub.0005s0141 Capsella rubella
Carub.0006s3110 Capsella rubella
Carub.0007s1842 Capsella rubella
Ca_06679_v3 Cicer arietinum L.
Ca_11368_v3 Cicer arietinum L.
Ca_12289_v3 Cicer arietinum L.
Ca_30787_v3 Cicer arietinum L.
CBR_g7973 Chara braunii
Cc02_g36790 Coffea canephora
Cc08_g13520 Coffea canephora
CDE01G0262 Ceratophyllum demersum
CDE04G2122 Ceratophyllum demersum
CDE11G0161 Ceratophyllum demersum
CDE12G0638 Ceratophyllum demersum
CDE12G0770 Ceratophyllum demersum
Cfa004407 Carpinus fangiana
Cfa012044 Carpinus fangiana
Ciclev10001840m.g Citrus clementina
Ciclev10021441m.g Citrus clementina
CiPaw.06G000100 Carya illinoinensis
CiPaw.11G145000 Carya illinoinensis
ClCG00G000070 Citrullus lanatus
ClCG10G003320 Citrullus lanatus
ClCG10G007710 Citrullus lanatus
COL.COLO4_12574 Corchorus olitorius
COL.COLO4_23833 Corchorus olitorius
COL.COLO4_31104 Corchorus olitorius
Cpa.g.sc17.21 Carica papaya
Cpa.g.sc29.58 Carica papaya
Cpa.g.sc29.60 Carica papaya
Cre02.g088350 Chlamydomonas reinhardtii
CsaV3_3G003350 Cucumis sativus L.
CsaV3_3G006850 Cucumis sativus L.
CSS0000630 Camellia sinensis var. sinensis
CSS0010369 Camellia sinensis var. sinensis
CSS0012000 Camellia sinensis var. sinensis
CSS0016693 Camellia sinensis var. sinensis
CSS0019365 Camellia sinensis var. sinensis
DCAR_000877 Daucus carota
DCAR_006792 Daucus carota
DCAR_022328 Daucus carota
DCAR_029790 Daucus carota
Dinv30974 Davidia involucrata
Dinv37738 Davidia involucrata
Dinv39054 Davidia involucrata
Duzib068G0500 Durio zibethinus
Duzib084G0562 Durio zibethinus
Duzib133G1040 Durio zibethinus
Duzib138G1952 Durio zibethinus
Duzib160G0298 Durio zibethinus
Duzib205G0198 Durio zibethinus
Duzib235G0032 Durio zibethinus
ECA233G5469 Erigeron canadensis
ECA236G4357 Erigeron canadensis
ECA240G3133 Erigeron canadensis
ECA240G4520 Erigeron canadensis
EL10Ac1g00938 Beta vulgaris
EL10Ac4g07555 Beta vulgaris
EL10Ac5g12656 Beta vulgaris
Eucgr.D01963 Eucalyptus grandis
Eucgr.D02444 Eucalyptus grandis
Eucgr.G00033 Eucalyptus grandis
FAN04G1514 Fragaria x ananassa
FAN04G2362 Fragaria x ananassa
FAN08G0554 Fragaria x ananassa
FAN08G1167 Fragaria x ananassa
FAN13G1780 Fragaria x ananassa
FAN13G2863 Fragaria x ananassa
FAN18G1288 Fragaria x ananassa
FAN18G4595 Fragaria x ananassa
FvH4_5g00960 Fragaria vesca
FvH4_5g27120 Fragaria vesca
Glyma.01G213500 Glycine max
Glyma.05G054500 Glycine max
Glyma.07G270500 Glycine max
Glyma.09G018400 Glycine max
Glyma.11G028400 Glycine max
Glyma.15G124400 Glycine max
Glyma.17G003500 Glycine max
Glyma.17G136900 Glycine max
Gohir.A02G090000 Gossypium hirsutum
Gohir.A03G012600 Gossypium hirsutum
Gohir.A08G175100 Gossypium hirsutum
Gohir.A12G102300 Gossypium hirsutum
Gohir.D02G107100 Gossypium hirsutum
Gohir.D03G156900 Gossypium hirsutum
Gohir.D08G193700 Gossypium hirsutum
Gohir.D12G105500 Gossypium hirsutum
Gorai.003G164800 Gossypium raimondii
Gorai.004G204000 Gossypium raimondii
Gorai.005G121700 Gossypium raimondii
Gorai.008G114800 Gossypium raimondii
GSVIVG01019921001 Vitis vinifera
GSVIVG01023098001 Vitis vinifera
GSVIVG01023099001 Vitis vinifera
GSVIVG01023100001 Vitis vinifera
GSVIVG01027531001 Vitis vinifera
HanXRQChr02g0047651 Helianthus annuus
HanXRQChr03g0087391 Helianthus annuus
HanXRQChr04g0108461 Helianthus annuus
HanXRQChr09g0246741 Helianthus annuus
HanXRQChr09g0247771 Helianthus annuus
HanXRQChr11g0333851 Helianthus annuus
HanXRQChr13g0417201 Helianthus annuus
Haze_09023 Corylus avellana
Haze_09028 Corylus avellana
Haze_09031 Corylus avellana
Haze_09942 Corylus avellana
Hma1.2p1_0052F.1_g030170 Hydrangea macrophylla
Hma1.2p1_0367F.1_g137210 Hydrangea macrophylla
HPP92_001214 Vanilla planifolia
HPP92_001957 Vanilla planifolia
HPP92_003254 Vanilla planifolia
HPP92_012758 Vanilla planifolia
HPP92_022246 Vanilla planifolia
Hund11554 Selenicereus undatus
Hund14679 Selenicereus undatus
Hund14681 Selenicereus undatus
Hund17007 Selenicereus undatus
Hund30865 Selenicereus undatus
Hund30867 Selenicereus undatus
Hund30875 Selenicereus undatus
Lalb_Chr05g0225261 Lupinus albus
Lalb_Chr09g0324601 Lupinus albus
Lalb_Chr15g0088531 Lupinus albus
Lalb_Chr16g0379881 Lupinus albus
Lj2g0025407 Lotus japonicus
Lj2P204T43 Lonicera japonica
Lj4g0011342 Lotus japonicus
Lj6g0024775 Lotus japonicus
Lj8A253T49 Lonicera japonica
Lj9C240T16 Lonicera japonica
Lsat_1_v5_gn_6_8521 Lactuca sativa
Lsat_1_v5_gn_6_88621 Lactuca sativa
Lsat_1_v5_gn_7_68060 Lactuca sativa
Lsat_1_v5_gn_7_69961 Lactuca sativa
Lsat_1_v5_gn_9_81361 Lactuca sativa
Manes.01G071100 Manihot esculenta
Manes.02G031700 Manihot esculenta
Manes.06G017100 Manihot esculenta
Manes.14G160001 Manihot esculenta
Mapoly0096s0049 Marchantia polymorpha
MBI04_g32264_MAGBIO Magnolia biondii
MBI07_g32821_MAGBIO Magnolia biondii
MBI12_g34480_MAGBIO Magnolia biondii
MBI18_g03880_MAGBIO Magnolia biondii
MBI18_g28937_MAGBIO Magnolia biondii
MCO14G297 Micromonas commoda
MD00G1071900 Malus domestica
MD04G1076400 Malus domestica
MD15G1446000 Malus domestica
Medtr2g028450 Medicago truncatula
Medtr3g064097 Medicago truncatula
Medtr4g101920 Medicago truncatula
Medtr5g011420 Medicago truncatula
MELO3C014001.2 Cucumis melo
MELO3C016420.2 Cucumis melo
Migut.A00875 Erythranthe guttata
Migut.B00690 Erythranthe guttata
Migut.C00026 Erythranthe guttata
Migut.E01011 Erythranthe guttata
Migut.N00998 Erythranthe guttata
MSTRG.12039 Avicennia marina
MSTRG.16446 Avicennia marina
MSTRG.17723 Avicennia marina
MSTRG.1923 Avicennia marina
MSTRG.27895 Avicennia marina
MSTRG.5180 Avicennia marina
Nitab4.5_0000288g0020 Nicotiana tabacum
Nitab4.5_0000399g0050 Nicotiana tabacum
Nitab4.5_0000399g0080 Nicotiana tabacum
Nitab4.5_0000439g0080 Nicotiana tabacum
Nitab4.5_0003395g0030 Nicotiana tabacum
Nitab4.5_0004090g0100 Nicotiana tabacum
Nitab4.5_0006122g0010 Nicotiana tabacum
Nn1g01185 Nelumbo nucifera
Nn4g25247 Nelumbo nucifera
Nn4g25248 Nelumbo nucifera
Oeu010601.1 Olea europaea
Oeu022404.1 Olea europaea
Oeu040239.1 Olea europaea
Oeu040240.1 Olea europaea
Oeu059475.1 Olea europaea
Oeu061918.1 Olea europaea
Os03g0374400 Oryza sativa ssp. japonica
Os07g0467600 Oryza sativa ssp. japonica
Os07g0634000 Oryza sativa ssp. japonica
Peaxi162Scf00035g00711 Petunia axillaris
Peaxi162Scf00194g00722 Petunia axillaris
Peaxi162Scf00271g00048 Petunia axillaris
PGR031G0371 Punica granatum
PGR031G1541 Punica granatum
PGR031G3706 Punica granatum
PGR042G0558 Punica granatum
PGSC0003DMG400018226 Solanum tuberosum
PGSC0003DMG401003922 Solanum tuberosum
Phvul.002G152000 Phaseolus vulgaris
Phvul.003G089500 Phaseolus vulgaris
Phvul.003G216500 Phaseolus vulgaris
Phvul.006G133900 Phaseolus vulgaris
Phvul.010G034901 Phaseolus vulgaris
Phvul.010G035000 Phaseolus vulgaris
Potri.001G078700 Populus trichocarpa
Potri.001G114600 Populus trichocarpa
Potri.003G117400 Populus trichocarpa
Potri.003G151800 Populus trichocarpa
Pp3c15_6250 Physcomitrium patens
Prupe.1G588100 Prunus persica
Prupe.3G013400 Prunus persica
Prupe.5G083300 Prunus persica
Psat1g170960 Pisum sativum
Psat2g099560 Pisum sativum
Psat2g180560 Pisum sativum
Psat4g069760 Pisum sativum
Psat5g049520 Pisum sativum
Psat5g130120 Pisum sativum
PSO210G5538 Papaver somniferum
PSO478G0037 Papaver somniferum
PSO761G0091 Papaver somniferum
PSO782G0180 Papaver somniferum
QL02p103966 Quercus lobata
QL12p015818 Quercus lobata
QL12p015822 Quercus lobata
RcHm_v2.0_Chr7g0200421 Rosa chinensis
RcHm_v2.0_Chr7g0218111 Rosa chinensis
Rhsim05G0117400 Rhododendron simsii
Rhsim07G0098200 Rhododendron simsii
Rhsim07G0099300 Rhododendron simsii
RhsimUnG0015800 Rhododendron simsii
Sabra01G0056000 Salix brachista
Sabra01G0087700 Salix brachista
Sabra03G0081800 Salix brachista
SalBow1G8073 Salvia bowleyana
SalBow4G0455 Salvia bowleyana
SalBow4G1794 Salvia bowleyana
SalBow6G6327 Salvia bowleyana
Sc01g0009060 Simmondsia chinensis
Sc02g0002450 Simmondsia chinensis
Sc02g0002500 Simmondsia chinensis
Sc07g0003390 Simmondsia chinensis
Sc22g0000450 Simmondsia chinensis
Sed0013446 Sechium edule
Sed0015231 Sechium edule
Sed0016368 Sechium edule
Sed0022499 Sechium edule
SEGI_29149 Sequoiadendron giganteum
SGA_v2.0_scaffold131G34446 Striga asiatica
SGA_v2.0_scaffold311G48226 Striga asiatica
SGA_v2.0_scaffold37G14859 Striga asiatica
SGA_v2.0_scaffold70G23579 Striga asiatica
SHI30092 Sapria himalayana
SMO197G0064 Selaginella moellendorffii
Solyc01g102530.3 Solanum lycopersicum
Solyc08g079670.3 Solanum lycopersicum
Sopen01g044970 Solanum pennellii
Sopen08g028030 Solanum pennellii
Sp1g11050 Schrenkiella parvula
Sp2g13650 Schrenkiella parvula
Sp6g05510 Schrenkiella parvula
Sp7g20930 Schrenkiella parvula
TAR362G1199 Trochodendron aralioides
TAR374G1317 Trochodendron aralioides
TAR375G0559 Trochodendron aralioides
TAR629G0785 Trochodendron aralioides
TAR629G1559 Trochodendron aralioides
TAR633G1624 Trochodendron aralioides
THA.LOC104801773 Tarenaya hassleriana
THA.LOC104809436 Tarenaya hassleriana
THA.LOC104814056 Tarenaya hassleriana
THA.LOC104824098 Tarenaya hassleriana
Thecc.01G374200 Theobroma cacao
Thecc.03G264700 Theobroma cacao
Thecc.06G067000 Theobroma cacao
Thhalv10004591m.g Eutrema salsugineum
Thhalv10008347m.g Eutrema salsugineum
Thhalv10025848m.g Eutrema salsugineum
Thhalv10028910m.g Eutrema salsugineum
TPR.G10508 Trifolium pratense
TPR.G19585 Trifolium pratense
TPR.G37694 Trifolium pratense
TWI23G0062 Tripterygium wilfordii
TWI59G0116 Tripterygium wilfordii
TWI60G1597 Tripterygium wilfordii
TWI81G0728 Tripterygium wilfordii
unitig_21.g20528 Utricularia gibba
unitig_744.g24325 Utricularia gibba
unitig_747.g21285 Utricularia gibba
vmacro01639 Vaccinium macrocarpon
vmacro19807 Vaccinium macrocarpon
vmacro22778 Vaccinium macrocarpon
VMungo0251G2424 Vigna mungo
VMungo0540G0916 Vigna mungo
VMungo1215G0228 Vigna mungo
VMungo1215G2712 Vigna mungo
Zm00001eb104780 Zea mays
Zm00001eb320210 Zea mays
Zm00001eb328520 Zea mays
Zm00001eb394080 Zea mays

User provided reference genes

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