Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p03280 Brassica napus
A03p63500 Brassica napus
A07p03950 Brassica napus
Aa31LG1G11360 Aethionema arabicum
Aa31LG2G14820 Aethionema arabicum
Aa31LG5G9260 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.1248 Anthoceros agrestis
Actinidia12675 Actinidia chinensis
Actinidia20568 Actinidia chinensis
Actinidia33484 Actinidia chinensis
Ah.01g023730 Amaranthus hybridus
Ah.05g173720 Amaranthus hybridus
AL1G10250 Arabidopsis lyrata
AL3G50040 Arabidopsis lyrata
AL7G15890 Arabidopsis lyrata
Aqoxy5G01027 Aquilegia oxysepala
Aqoxy5G03880 Aquilegia oxysepala
Aqoxy6G01686 Aquilegia oxysepala
Aqoxy7G00770 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.DV6FW6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PC1F1T Arachis hypogaea
AT1G02040 Arabidopsis thaliana
AT2G17180 Arabidopsis thaliana
AT4G35280 Arabidopsis thaliana
ATR0069G053 Amborella trichopoda
ATR0317G098 Amborella trichopoda
ATR0500G001 Amborella trichopoda
ATR0661G271 Amborella trichopoda
ATR0681G219 Amborella trichopoda
ATR0730G217 Amborella trichopoda
ATR0751G124 Amborella trichopoda
ATR1101G107 Amborella trichopoda
ATR1128G018 Amborella trichopoda
ATR1128G021 Amborella trichopoda
ATR1134G039 Amborella trichopoda
Atru.chr5.230 Acer truncatum
Atru.chr5.3548 Acer truncatum
AUR62004158 Chenopodium quinoa
AUR62012918 Chenopodium quinoa
AUR62013690 Chenopodium quinoa
AUR62027124 Chenopodium quinoa
AUR62033207 Chenopodium quinoa
AUR62033209 Chenopodium quinoa
AUR62044226 Chenopodium quinoa
BcaB02g10252 Brassica carinata
BcaB03g11772 Brassica carinata
BcaB03g13631 Brassica carinata
BcaB03g16465 Brassica carinata
BcaC01g00827 Brassica carinata
BcaC06g36226 Brassica carinata
BcaC07g42345 Brassica carinata
BcaNung00612 Brassica carinata
BcaNung02386 Brassica carinata
BcaNung06636 Brassica carinata
BolC1t00353H Brassica oleracea
BolC3t20775H Brassica oleracea
BolC3t20778H Brassica oleracea
BolC5t28797H Brassica oleracea
BolC7t41045H Brassica oleracea
BolC7t46532H Brassica oleracea
BolC8t52913H Brassica oleracea
BraA01t00313Z Brassica rapa
BraA03t15420Z Brassica rapa
BraA07t28187Z Brassica rapa
C03p84840 Brassica napus
C05p00100 Brassica napus
C07p06290 Brassica napus
C07p61070 Brassica napus
C08p54020 Brassica napus
CAN.G1058.34 Capsicum annuum
CAN.G1080.7 Capsicum annuum
CAN.G175.1 Capsicum annuum
CAN.G62.50 Capsicum annuum
CAN.G899.2 Capsicum annuum
CANSAT21G1087 Cannabis sativa
CANSAT25G1861 Cannabis sativa
CANSAT25G2502 Cannabis sativa
CANSAT25G3492 Cannabis sativa
CANSAT56G1055 Cannabis sativa
CANSAT56G2339 Cannabis sativa
CARHR000300 Cardamine hirsuta
CARHR243600 Cardamine hirsuta
CARHR293490 Cardamine hirsuta
Carub.0001s0020 Capsella rubella
Carub.0003s3112 Capsella rubella
Carub.0007s0502 Capsella rubella
Ca_18120_v3 Cicer arietinum L.
Cc02_g24690 Coffea canephora
Cc08_g12370 Coffea canephora
Cc10_g04030 Coffea canephora
CDE02G2656 Ceratophyllum demersum
CDE02G3608 Ceratophyllum demersum
CDE11G0678 Ceratophyllum demersum
CDE11G0847 Ceratophyllum demersum
Cfa011145 Carpinus fangiana
Ciclev10024047m.g Citrus clementina
Ciclev10030233m.g Citrus clementina
CiPaw.05G091800 Carya illinoinensis
CiPaw.06G116500 Carya illinoinensis
CiPaw.13G031800 Carya illinoinensis
CiPaw.14G025000 Carya illinoinensis
ClCG02G003500 Citrullus lanatus
ClCG02G009940 Citrullus lanatus
ClCG05G000230 Citrullus lanatus
COL.COLO4_17932 Corchorus olitorius
Cpa.g.sc138.48 Carica papaya
Cpa.g.sc20.205 Carica papaya
Cpa.g.sc212.14 Carica papaya
Cpa.g.sc212.15 Carica papaya
CsaV3_3G003770 Cucumis sativus L.
CsaV3_3G007380 Cucumis sativus L.
CsaV3_7G001810 Cucumis sativus L.
CSS0027823 Camellia sinensis var. sinensis
CSS0037060 Camellia sinensis var. sinensis
CSS0043182 Camellia sinensis var. sinensis
DCAR_006286 Daucus carota
DCAR_008495 Daucus carota
DCAR_015662 Daucus carota
DCAR_027772 Daucus carota
DCAR_029873 Daucus carota
Dinv41879 Davidia involucrata
Dinv43664 Davidia involucrata
Dinv44114 Davidia involucrata
Duzib052G0399 Durio zibethinus
Duzib132G0848 Durio zibethinus
Duzib133G0388 Durio zibethinus
Duzib138G0481 Durio zibethinus
Duzib248G0614 Durio zibethinus
ECA233G2259 Erigeron canadensis
ECA234G0805 Erigeron canadensis
ECA240G3944 Erigeron canadensis
ECA246G3372 Erigeron canadensis
EL10Ac1g00831 Beta vulgaris
EL10Ac9g21244 Beta vulgaris
Eucgr.D02498 Eucalyptus grandis
Eucgr.I01518 Eucalyptus grandis
FAN01G3149 Fragaria x ananassa
FAN03G0186 Fragaria x ananassa
FAN06G2030 Fragaria x ananassa
FAN06G2490 Fragaria x ananassa
FAN10G2303 Fragaria x ananassa
FAN10G2820 Fragaria x ananassa
FAN15G2117 Fragaria x ananassa
FAN15G2497 Fragaria x ananassa
FAN20G1232 Fragaria x ananassa
FAN24G2331 Fragaria x ananassa
FAN27G0184 Fragaria x ananassa
FvH4_2g16630 Fragaria vesca
FvH4_7g10970 Fragaria vesca
Glyma.01G134100 Glycine max
Glyma.02G311100 Glycine max
Glyma.03G033700 Glycine max
Glyma.03G033750 Glycine max
Gohir.A01G175000 Gossypium hirsutum
Gohir.A03G209700 Gossypium hirsutum
Gohir.A07G147300 Gossypium hirsutum
Gohir.A08G030100 Gossypium hirsutum
Gohir.A11G078400 Gossypium hirsutum
Gohir.A12G095300 Gossypium hirsutum
Gohir.D01G166100 Gossypium hirsutum
Gohir.D02G231400 Gossypium hirsutum
Gohir.D07G153300 Gossypium hirsutum
Gohir.D08G041000 Gossypium hirsutum
Gohir.D11G082900 Gossypium hirsutum
Gohir.D12G097900 Gossypium hirsutum
Gorai.001G175500 Gossypium raimondii
Gorai.002G206600 Gossypium raimondii
Gorai.004G039900 Gossypium raimondii
Gorai.005G259000 Gossypium raimondii
Gorai.007G088600 Gossypium raimondii
Gorai.008G106600 Gossypium raimondii
GSVIVG01018162001 Vitis vinifera
GSVIVG01023887001 Vitis vinifera
GSVIVG01037363001 Vitis vinifera
GSVIVG01037364001 Vitis vinifera
HanXRQChr12g0374431 Helianthus annuus
HanXRQChr13g0422921 Helianthus annuus
HanXRQChr16g0519751 Helianthus annuus
HanXRQChr17g0543991 Helianthus annuus
HanXRQChr17g0568191 Helianthus annuus
Haze_02015 Corylus avellana
Haze_02715 Corylus avellana
Hma1.2p1_0032F.1_g018690 Hydrangea macrophylla
Hma1.2p1_0032F.1_g018810 Hydrangea macrophylla
Hma1.2p1_0032F.1_g018820 Hydrangea macrophylla
HPP92_003504 Vanilla planifolia
HPP92_007426 Vanilla planifolia
HPP92_014994 Vanilla planifolia
HPP92_020708 Vanilla planifolia
HPP92_022422 Vanilla planifolia
HPP92_025504 Vanilla planifolia
HPP92_025531 Vanilla planifolia
Lalb_Chr07g0190341 Lupinus albus
Lalb_Chr13g0291851 Lupinus albus
Lalb_Chr22g0352391 Lupinus albus
Lalb_Chr22g0352401 Lupinus albus
Lj1g0000805 Lotus japonicus
Lj2C218T7 Lonicera japonica
Lj3g0001949 Lotus japonicus
Lj5P172T80 Lonicera japonica
Lj7P538T27 Lonicera japonica
Lj9A564G20 Lonicera japonica
Lj9P406T21 Lonicera japonica
LjContig00222g0006901 Lotus japonicus
Lsat_1_v5_gn_3_129301 Lactuca sativa
Lsat_1_v5_gn_3_48800 Lactuca sativa
Lsat_1_v5_gn_4_45420 Lactuca sativa
Lsat_1_v5_gn_8_121041 Lactuca sativa
Manes.01G269400 Manihot esculenta
Manes.04G008800 Manihot esculenta
Manes.05G049600 Manihot esculenta
Manes.08G058500 Manihot esculenta
Manes.09G006400 Manihot esculenta
Mapoly0011s0122 Marchantia polymorpha
MBI03_g28532_MAGBIO Magnolia biondii
MBI04_g09504_MAGBIO Magnolia biondii
MBI07_g05482_MAGBIO Magnolia biondii
MBI07_g06131_MAGBIO Magnolia biondii
MBI08_g12710_MAGBIO Magnolia biondii
MD02G1211300 Malus domestica
MD05G1134500 Malus domestica
MD07G1113900 Malus domestica
MD10G1139600 Malus domestica
Medtr4g028610 Medicago truncatula
Medtr5g062300 Medicago truncatula
Medtr5g099040 Medicago truncatula
MELO3C005961.2 Cucumis melo
MELO3C013258.2 Cucumis melo
MELO3C014059.2 Cucumis melo
Migut.A00958 Erythranthe guttata
Migut.B01587 Erythranthe guttata
Migut.N01353 Erythranthe guttata
MSTRG.17157 Avicennia marina
Nitab4.5_0000032g0420 Nicotiana tabacum
Nitab4.5_0000633g0100 Nicotiana tabacum
Nitab4.5_0000859g0150 Nicotiana tabacum
Nitab4.5_0001329g0010 Nicotiana tabacum
Nitab4.5_0005050g0060 Nicotiana tabacum
Nitab4.5_0005322g0020 Nicotiana tabacum
Nitab4.5_0007754g0010 Nicotiana tabacum
Nitab4.5_0007911g0020 Nicotiana tabacum
Nitab4.5_0007911g0030 Nicotiana tabacum
Nn1g00989 Nelumbo nucifera
Nn2g10964 Nelumbo nucifera
Nn6g31718 Nelumbo nucifera
Nn6g33953 Nelumbo nucifera
Oeu009625.1 Olea europaea
Oeu015527.1 Olea europaea
Oeu015529.1 Olea europaea
Oeu019599.1 Olea europaea
Oeu020430.1 Olea europaea
Oeu051917.1 Olea europaea
Os02g0293900 Oryza sativa ssp. japonica
Os02g0659100 Oryza sativa ssp. japonica
Os04g0552400 Oryza sativa ssp. japonica
Os06g0727000 Oryza sativa ssp. japonica
Peaxi162Scf00051g00034 Petunia axillaris
Peaxi162Scf00263g00147 Petunia axillaris
Peaxi162Scf00713g00612 Petunia axillaris
Peaxi162Scf00713g00619 Petunia axillaris
Peaxi162Scf01052g10014 Petunia axillaris
PGR004G2454 Punica granatum
PGR042G3277 Punica granatum
PGR142G1089 Punica granatum
PGSC0003DMG400004815 Solanum tuberosum
PGSC0003DMG400007023 Solanum tuberosum
PGSC0003DMG400026021 Solanum tuberosum
PGSC0003DMG400030055 Solanum tuberosum
PGSC0003DMG400038709 Solanum tuberosum
PGSC0003DMG401000796 Solanum tuberosum
Phvul.008G291700 Phaseolus vulgaris
Phvul.010G071100 Phaseolus vulgaris
Phvul.011G008400 Phaseolus vulgaris
Potri.002G143600 Populus trichocarpa
Potri.004G205300 Populus trichocarpa
Potri.009G166200 Populus trichocarpa
Potri.014G066200 Populus trichocarpa
Pp3c18_22010 Physcomitrium patens
Pp3c19_21390 Physcomitrium patens
Pp3c21_440 Physcomitrium patens
Pp3c22_2200 Physcomitrium patens
Prupe.2G136600 Prunus persica
Prupe.8G178300 Prunus persica
Psat0s219g0120 Pisum sativum
Psat2g001240 Pisum sativum
Psat2g023640 Pisum sativum
PSO017G6323 Papaver somniferum
PSO017G6757 Papaver somniferum
PSO063G0397 Papaver somniferum
PSO170G5430 Papaver somniferum
PSO210G1674 Papaver somniferum
PSO478G0578 Papaver somniferum
PSO761G0216 Papaver somniferum
PSO782G2984 Papaver somniferum
QL04p036004 Quercus lobata
QL10p056466 Quercus lobata
QL11p055621 Quercus lobata
QL11p055917 Quercus lobata
RcHm_v2.0_Chr1g0348911 Rosa chinensis
RcHm_v2.0_Chr6g0280711 Rosa chinensis
Rhsim01G0135500 Rhododendron simsii
Rhsim05G0047500 Rhododendron simsii
Rhsim07G0031900 Rhododendron simsii
Rhsim11G0009300 Rhododendron simsii
Rhsim11G0197100 Rhododendron simsii
RhsimUnG0141900 Rhododendron simsii
Sabra02G0112000 Salix brachista
Sabra04G0138600 Salix brachista
Sabra14G0046200 Salix brachista
Sabra15G0041100 Salix brachista
SalBow5G1611 Salvia bowleyana
SalBow5G3920 Salvia bowleyana
SalBow5G5261 Salvia bowleyana
SalBow6G3839 Salvia bowleyana
Sc02g0002840 Simmondsia chinensis
Sc08g0002310 Simmondsia chinensis
Sed0001330 Sechium edule
Sed0005621 Sechium edule
Sed0013042 Sechium edule
Sed0014639 Sechium edule
Sed0016743 Sechium edule
SEGI_00942 Sequoiadendron giganteum
SEGI_02862 Sequoiadendron giganteum
SEGI_05630 Sequoiadendron giganteum
SEGI_07232 Sequoiadendron giganteum
SEGI_17344 Sequoiadendron giganteum
SEGI_26403 Sequoiadendron giganteum
SEGI_27594 Sequoiadendron giganteum
SEGI_37902 Sequoiadendron giganteum
SEGI_41393 Sequoiadendron giganteum
SGA_v2.0_scaffold120G32889 Striga asiatica
SGA_v2.0_scaffold146G36148 Striga asiatica
SGA_v2.0_scaffold153G36964 Striga asiatica
SGA_v2.0_scaffold399G50799 Striga asiatica
SGA_v2.0_scaffold98G29296 Striga asiatica
SHI13573 Sapria himalayana
SMO147G0089 Selaginella moellendorffii
SMO269G0014 Selaginella moellendorffii
Solyc01g090830.2 Solanum lycopersicum
Solyc04g071087.1 Solanum lycopersicum
Solyc05g050860.2 Solanum lycopersicum
Solyc06g005180.1 Solanum lycopersicum
Solyc06g060480.1 Solanum lycopersicum
Sopen01g036560 Solanum pennellii
Sopen05g029350 Solanum pennellii
Sopen06g001170 Solanum pennellii
Sopen06g020600 Solanum pennellii
Sp1g00270 Schrenkiella parvula
Sp3g30500 Schrenkiella parvula
Sp4g08060 Schrenkiella parvula
Sp7g33060 Schrenkiella parvula
TAR374G0608 Trochodendron aralioides
TAR381G0686 Trochodendron aralioides
TAR625G1147 Trochodendron aralioides
TAR628G0397 Trochodendron aralioides
TAR629G0982 Trochodendron aralioides
TAR633G1147 Trochodendron aralioides
TAR636G2749 Trochodendron aralioides
THA.LOC104801482 Tarenaya hassleriana
THA.LOC104803674 Tarenaya hassleriana
THA.LOC104819687 Tarenaya hassleriana
Thecc.01G384700 Theobroma cacao
Thecc.02G044700 Theobroma cacao
Thhalv10008559m.g Eutrema salsugineum
Thhalv10023020m.g Eutrema salsugineum
Thhalv10025912m.g Eutrema salsugineum
TPR.G18627 Trifolium pratense
TPR.G4958 Trifolium pratense
TWI14G0545 Tripterygium wilfordii
TWI23G0185 Tripterygium wilfordii
TWI31G0140 Tripterygium wilfordii
TWI59G1025 Tripterygium wilfordii
TWI75G1586 Tripterygium wilfordii
TWI79G0030 Tripterygium wilfordii
unitig_0.g1056 Utricularia gibba
unitig_0.g1313 Utricularia gibba
unitig_26.g8882 Utricularia gibba
unitig_26.g8884 Utricularia gibba
unitig_52.g17363 Utricularia gibba
unitig_578.g16756 Utricularia gibba
unitig_736.g22730 Utricularia gibba
unitig_899.g15615 Utricularia gibba
vmacro02329 Vaccinium macrocarpon
vmacro17301 Vaccinium macrocarpon
vmacro21037 Vaccinium macrocarpon
VMungo0331G0774 Vigna mungo
Zm00001eb020300 Zea mays
Zm00001eb033660 Zea mays
Zm00001eb074590 Zea mays
Zm00001eb186640 Zea mays
Zm00001eb199290 Zea mays
Zm00001eb228560 Zea mays
Zm00001eb393210 Zea mays
Zm00001eb429620 Zea mays

User provided reference genes

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