Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p22810 Brassica napus
A01p32430 Brassica napus
A05p25950 Brassica napus
A09p02100 Brassica napus
A09p68360 Brassica napus
A10p01710 Brassica napus
Aa31LG1G9450 Aethionema arabicum
Aa31LG5G2330 Aethionema arabicum
Aa31LG8G9280 Aethionema arabicum
Aa31LG9G2610 Aethionema arabicum
Actinidia21136 Actinidia chinensis
Actinidia21137 Actinidia chinensis
Actinidia23534 Actinidia chinensis
Actinidia23535 Actinidia chinensis
Actinidia24918 Actinidia chinensis
Actinidia40125 Actinidia chinensis
Ah.02g111260 Amaranthus hybridus
Ah.07g204160 Amaranthus hybridus
Ah.11g050330 Amaranthus hybridus
Ah.13g067540 Amaranthus hybridus
AL1G12540 Arabidopsis lyrata
AL3G37110 Arabidopsis lyrata
AL6G50320 Arabidopsis lyrata
AL7G41160 Arabidopsis lyrata
Aqoxy2G03441 Aquilegia oxysepala
Aqoxy5G00422 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.AFV0LT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C1DBA7 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.C4CAJP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.E13XA1 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.JJAW7G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.M530PZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V75EHI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZRQ19F Arachis hypogaea
AT1G03080 Arabidopsis thaliana
AT3G22790 Arabidopsis thaliana
AT4G02710 Arabidopsis thaliana
AT4G14760 Arabidopsis thaliana
ATR0665G025 Amborella trichopoda
Atru.chr4.2386 Acer truncatum
Atru.chr4.2409 Acer truncatum
Atru.chr5.1495 Acer truncatum
Atru.chr5.1496 Acer truncatum
Atru.ctg752_3.19 Acer truncatum
Atru.ctg752_3.21 Acer truncatum
Atru.ctg752_3.22 Acer truncatum
Atru.ctg752_3.23 Acer truncatum
AUR62011988 Chenopodium quinoa
AUR62032305 Chenopodium quinoa
AUR62033645 Chenopodium quinoa
AUR62034737 Chenopodium quinoa
BcaB01g02016 Brassica carinata
BcaB03g15742 Brassica carinata
BcaC04g24007 Brassica carinata
BcaC05g24641 Brassica carinata
BcaC07g40123 Brassica carinata
BcaC07g42267 Brassica carinata
BcaC07g42268 Brassica carinata
BcaC09g50157 Brassica carinata
BcaNung00336 Brassica carinata
BolC1t02767H Brassica oleracea
BolC1t04110H Brassica oleracea
BolC5t28949H Brassica oleracea
BolC5t32773H Brassica oleracea
BolC9t53148H Brassica oleracea
BraA01t02193Z Brassica rapa
BraA01t03373Z Brassica rapa
BraA05t21480Z Brassica rapa
BraA09t35859Z Brassica rapa
BraA09t42172Z Brassica rapa
BraA10t42447Z Brassica rapa
C01p28380 Brassica napus
C01p41560 Brassica napus
C05p01700 Brassica napus
C05p40320 Brassica napus
C08p52930 Brassica napus
C09p02190 Brassica napus
CAN.G1402.9 Capsicum annuum
CAN.G433.16 Capsicum annuum
CANSAT25G0057 Cannabis sativa
CANSAT78G1002 Cannabis sativa
CARHR002430 Cardamine hirsuta
CARHR098630 Cardamine hirsuta
CARHR221290 Cardamine hirsuta
CARHR251010 Cardamine hirsuta
Carub.0001s0222 Capsella rubella
Carub.0003s2291 Capsella rubella
Carub.0006s3441 Capsella rubella
Carub.0007s2738 Capsella rubella
Ca_08619_v3 Cicer arietinum L.
Ca_08627_v3 Cicer arietinum L.
Ca_09737_v3 Cicer arietinum L.
Ca_10861_v3 Cicer arietinum L.
Ca_24407_v3 Cicer arietinum L.
Cc02_g30990 Coffea canephora
Cc03_g04140 Coffea canephora
CDE02G2731 Ceratophyllum demersum
CDE05G2065 Ceratophyllum demersum
CDE05G2981 Ceratophyllum demersum
Cfa006181 Carpinus fangiana
Cfa008459 Carpinus fangiana
Ciclev10004130m.g Citrus clementina
Ciclev10018459m.g Citrus clementina
CiPaw.01G197200 Carya illinoinensis
CiPaw.02G122400 Carya illinoinensis
CiPaw.07G088500 Carya illinoinensis
CiPaw.08G108300 Carya illinoinensis
ClCG05G004940 Citrullus lanatus
ClCG07G000430 Citrullus lanatus
ClCG09G007330 Citrullus lanatus
COL.COLO4_09053 Corchorus olitorius
COL.COLO4_21542 Corchorus olitorius
Cpa.g.sc1647.1 Carica papaya
Cpa.g.sc1647.2 Carica papaya
Cpa.g.sc58.60 Carica papaya
CsaV3_2G013610 Cucumis sativus L.
CsaV3_3G013000 Cucumis sativus L.
CsaV3_7G027820 Cucumis sativus L.
CSS0004148 Camellia sinensis var. sinensis
CSS0006330 Camellia sinensis var. sinensis
CSS0009491 Camellia sinensis var. sinensis
CSS0016542 Camellia sinensis var. sinensis
CSS0017152 Camellia sinensis var. sinensis
CSS0026924 Camellia sinensis var. sinensis
CSS0030707 Camellia sinensis var. sinensis
CSS0031408 Camellia sinensis var. sinensis
CSS0032582 Camellia sinensis var. sinensis
CSS0035482 Camellia sinensis var. sinensis
CSS0036142 Camellia sinensis var. sinensis
CSS0037517 Camellia sinensis var. sinensis
CSS0037955 Camellia sinensis var. sinensis
CSS0042524 Camellia sinensis var. sinensis
CSS0044359 Camellia sinensis var. sinensis
CSS0046034 Camellia sinensis var. sinensis
DCAR_005860 Daucus carota
DCAR_012500 Daucus carota
DCAR_024179 Daucus carota
DCAR_030679 Daucus carota
Dinv14033 Davidia involucrata
Dinv22512 Davidia involucrata
Dinv31633 Davidia involucrata
Dinv32897 Davidia involucrata
Dinv34787 Davidia involucrata
Dinv44563 Davidia involucrata
Duzib133G0925 Durio zibethinus
Duzib138G1205 Durio zibethinus
Duzib151G0506 Durio zibethinus
Duzib211G0338 Durio zibethinus
Duzib212G0402 Durio zibethinus
ECA240G1146 Erigeron canadensis
ECA248G0951 Erigeron canadensis
EL10Ac3g06467 Beta vulgaris
EL10Ac5g10519 Beta vulgaris
Eucgr.H01415 Eucalyptus grandis
Eucgr.H03424 Eucalyptus grandis
Eucgr.K03339 Eucalyptus grandis
FAN15G2415 Fragaria x ananassa
FAN22G2244 Fragaria x ananassa
FAN24G2442 Fragaria x ananassa
FAN27G2684 Fragaria x ananassa
FvH4_2g23102 Fragaria vesca
FvH4_4g00822 Fragaria vesca
Glyma.01G232901 Glycine max
Glyma.01G236400 Glycine max
Glyma.02G145200 Glycine max
Glyma.03G156600 Glycine max
Glyma.10G028800 Glycine max
Glyma.10G245400 Glycine max
Glyma.11G006800 Glycine max
Glyma.13G048000 Glycine max
Glyma.17G171400 Glycine max
Glyma.18G155967 Glycine max
Glyma.19G158900 Glycine max
Glyma.20G149200 Glycine max
Gohir.A08G064800 Gossypium hirsutum
Gohir.A08G187000 Gossypium hirsutum
Gohir.A09G218100 Gossypium hirsutum
Gohir.A11G125100 Gossypium hirsutum
Gohir.A12G003400 Gossypium hirsutum
Gohir.D08G073300 Gossypium hirsutum
Gohir.D08G073333 Gossypium hirsutum
Gohir.D08G073366 Gossypium hirsutum
Gohir.D08G205300 Gossypium hirsutum
Gohir.D09G220580 Gossypium hirsutum
Gohir.D09G220660 Gossypium hirsutum
Gohir.D11G130300 Gossypium hirsutum
Gohir.D12G003100 Gossypium hirsutum
Gorai.004G077700 Gossypium raimondii
Gorai.004G217300 Gossypium raimondii
Gorai.006G241600 Gossypium raimondii
Gorai.007G139300 Gossypium raimondii
Gorai.008G002900 Gossypium raimondii
GSVIVG01001195001 Vitis vinifera
GSVIVG01018023001 Vitis vinifera
GSVIVG01038202001 Vitis vinifera
HanXRQChr01g0006361 Helianthus annuus
HanXRQChr03g0072561 Helianthus annuus
HanXRQChr09g0247271 Helianthus annuus
HanXRQChr11g0337361 Helianthus annuus
Haze_04665 Corylus avellana
Haze_11215 Corylus avellana
Hma1.2p1_0602F.1_g187540 Hydrangea macrophylla
Hma1.2p1_1924F.1_g307680 Hydrangea macrophylla
Hma1.2p1_2084F.1_g313640 Hydrangea macrophylla
HPP92_012117 Vanilla planifolia
HPP92_012119 Vanilla planifolia
HPP92_012127 Vanilla planifolia
HPP92_023545 Vanilla planifolia
HPP92_023546 Vanilla planifolia
HPP92_024844 Vanilla planifolia
HPP92_026611 Vanilla planifolia
HPP92_026612 Vanilla planifolia
HPP92_026613 Vanilla planifolia
Hund02847 Selenicereus undatus
Hund09522 Selenicereus undatus
Hund12098 Selenicereus undatus
Lalb_Chr01g0020071 Lupinus albus
Lalb_Chr02g0142601 Lupinus albus
Lalb_Chr06g0160711 Lupinus albus
Lalb_Chr06g0162831 Lupinus albus
Lalb_Chr09g0319931 Lupinus albus
Lalb_Chr09g0319941 Lupinus albus
Lalb_Chr16g0376421 Lupinus albus
Lalb_Chr21g0304761 Lupinus albus
Lalb_Chr21g0306371 Lupinus albus
Lj1A50G82 Lonicera japonica
Lj1g0023364 Lotus japonicus
Lj2A1167T98 Lonicera japonica
Lj3A729T52 Lonicera japonica
Lj5g0004600 Lotus japonicus
Lj5g0015567 Lotus japonicus
Lj6C610T3 Lonicera japonica
LjContig00408g0023554 Lotus japonicus
Lsat_1_v5_gn_5_185981 Lactuca sativa
Lsat_1_v5_gn_7_67960 Lactuca sativa
Manes.01G204900 Manihot esculenta
Manes.03G174500 Manihot esculenta
Manes.03G174800 Manihot esculenta
Manes.05G080300 Manihot esculenta
Manes.15G031600 Manihot esculenta
MD03G1260100 Malus domestica
MD11G1280400 Malus domestica
MD13G1197900 Malus domestica
MD16G1197900 Malus domestica
Medtr1g071540 Medicago truncatula
Medtr1g103160 Medicago truncatula
Medtr5g006520 Medicago truncatula
Medtr7g095410 Medicago truncatula
MELO3C006509.2 Cucumis melo
MELO3C014299.2 Cucumis melo
MELO3C015797.2 Cucumis melo
MELO3C032170.2 Cucumis melo
Migut.A01200 Erythranthe guttata
Migut.B01014 Erythranthe guttata
Migut.D00334 Erythranthe guttata
Migut.G00371 Erythranthe guttata
Migut.H01164 Erythranthe guttata
Migut.N00205 Erythranthe guttata
MSTRG.21538 Avicennia marina
MSTRG.21540 Avicennia marina
MSTRG.21542 Avicennia marina
MSTRG.21869 Avicennia marina
MSTRG.24729 Avicennia marina
MSTRG.4052 Avicennia marina
MSTRG.9961 Avicennia marina
Nitab4.5_0000050g0270 Nicotiana tabacum
Nitab4.5_0000085g0270 Nicotiana tabacum
Nitab4.5_0000252g0110 Nicotiana tabacum
Nitab4.5_0000678g0080 Nicotiana tabacum
Nitab4.5_0002430g0020 Nicotiana tabacum
Nitab4.5_0002430g0030 Nicotiana tabacum
Nitab4.5_0003249g0050 Nicotiana tabacum
Nn1g02404 Nelumbo nucifera
Nn6g34135 Nelumbo nucifera
Oeu008870.1 Olea europaea
Oeu023623.1 Olea europaea
Oeu023883.1 Olea europaea
Oeu025754.1 Olea europaea
Oeu053309.1 Olea europaea
Os03g0104000 Oryza sativa ssp. japonica
Os03g0161100 Oryza sativa ssp. japonica
Os03g0637900 Oryza sativa ssp. japonica
Os10g0422000 Oryza sativa ssp. japonica
Os12g0605100 Oryza sativa ssp. japonica
Peaxi162Scf00230g00812 Petunia axillaris
Peaxi162Scf00245g00136 Petunia axillaris
Peaxi162Scf00245g01313 Petunia axillaris
Peaxi162Scf00520g00613 Petunia axillaris
PGR004G1249 Punica granatum
PGR044G2527 Punica granatum
PGR119G0264 Punica granatum
PGSC0003DMG400007687 Solanum tuberosum
PGSC0003DMG400019351 Solanum tuberosum
PGSC0003DMG400028772 Solanum tuberosum
Phvul.001G154100 Phaseolus vulgaris
Phvul.002G043800 Phaseolus vulgaris
Phvul.007G060600 Phaseolus vulgaris
Phvul.007G174000 Phaseolus vulgaris
Potri.002G049600 Populus trichocarpa
Potri.005G213400 Populus trichocarpa
Potri.008G156200 Populus trichocarpa
Potri.008G156250 Populus trichocarpa
Potri.010G083300 Populus trichocarpa
Prupe.1G019400 Prunus persica
Prupe.3G033900 Prunus persica
Prupe.8G236300 Prunus persica
Psat0s3955g0120 Pisum sativum
Psat3g062600 Pisum sativum
Psat4g209880 Pisum sativum
Psat6g059600 Pisum sativum
Psat6g205880 Pisum sativum
PSO017G7161 Papaver somniferum
PSO170G5676 Papaver somniferum
PSO210G1222 Papaver somniferum
PSO210G4539 Papaver somniferum
PSO675G3983 Papaver somniferum
PSO732G0432 Papaver somniferum
QL06p001382 Quercus lobata
QL12p020650 Quercus lobata
QL93p1864_0002 Quercus lobata
RcHm_v2.0_Chr2g0111811 Rosa chinensis
RcHm_v2.0_Chr4g0387381 Rosa chinensis
RcHm_v2.0_Chr6g0290321 Rosa chinensis
Rhsim01G0272700 Rhododendron simsii
Rhsim04G0199200 Rhododendron simsii
Sabra02G0040600 Salix brachista
Sabra05G0163100 Salix brachista
Sabra10G0059700 Salix brachista
SalBow2G1384 Salvia bowleyana
SalBow3G1720 Salvia bowleyana
Sc05g0001220 Simmondsia chinensis
Sc17g0001230 Simmondsia chinensis
Sc19g0004010 Simmondsia chinensis
Sed0003437 Sechium edule
Sed0008526 Sechium edule
Sed0008729 Sechium edule
Sed0022140 Sechium edule
Sed0027882 Sechium edule
SEGI_08741 Sequoiadendron giganteum
SGA_v2.0_scaffold138G35310 Striga asiatica
SGA_v2.0_scaffold151G36703 Striga asiatica
SGA_v2.0_scaffold191G40457 Striga asiatica
SGA_v2.0_scaffold1G00518 Striga asiatica
SGA_v2.0_scaffold308G48125 Striga asiatica
SGA_v2.0_scaffold79G25590 Striga asiatica
SHI09978 Sapria himalayana
Solyc09g065550.4 Solanum lycopersicum
Solyc09g082510.3 Solanum lycopersicum
Solyc10g045290.2 Solanum lycopersicum
Sopen09g027300 Solanum pennellii
Sopen09g031370 Solanum pennellii
Sopen10g014450 Solanum pennellii
Sp1g02080 Schrenkiella parvula
Sp3g20490 Schrenkiella parvula
Sp7g12890 Schrenkiella parvula
TAR362G0063 Trochodendron aralioides
TAR365G0196 Trochodendron aralioides
TAR365G0452 Trochodendron aralioides
TAR365G0678 Trochodendron aralioides
TAR633G1270 Trochodendron aralioides
THA.LOC104803055 Tarenaya hassleriana
THA.LOC104808571 Tarenaya hassleriana
THA.LOC104825990 Tarenaya hassleriana
THA.LOC104827554 Tarenaya hassleriana
Thecc.01G273300 Theobroma cacao
Thecc.04G236700 Theobroma cacao
Thhalv10006534m.g Eutrema salsugineum
Thhalv10019883m.g Eutrema salsugineum
Thhalv10024203m.g Eutrema salsugineum
Thhalv10028372m.g Eutrema salsugineum
TPR.G24316 Trifolium pratense
TPR.G25701 Trifolium pratense
TPR.G26084 Trifolium pratense
TPR.G26110 Trifolium pratense
TPR.G26116 Trifolium pratense
TPR.G37911 Trifolium pratense
TWI09G1283 Tripterygium wilfordii
TWI12G0883 Tripterygium wilfordii
TWI18G0970 Tripterygium wilfordii
TWI53G0917 Tripterygium wilfordii
unitig_22.g5270 Utricularia gibba
unitig_60.g25793 Utricularia gibba
unitig_736.g22461 Utricularia gibba
unitig_749.g14075 Utricularia gibba
vmacro08360 Vaccinium macrocarpon
vmacro14904 Vaccinium macrocarpon
VMungo0464G1869 Vigna mungo
VMungo0720G0445 Vigna mungo
VMungo0720G2930 Vigna mungo
VMungo1080G0478 Vigna mungo
VMungo1215G1460 Vigna mungo
VMungo1383G0169 Vigna mungo
Zm00001eb031290 Zea mays
Zm00001eb047830 Zea mays
Zm00001eb050880 Zea mays
Zm00001eb135720 Zea mays
Zm00001eb222880 Zea mays
Zm00001eb222900 Zea mays
Zm00001eb222910 Zea mays

User provided reference genes

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