Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A03p55360 Brassica napus
A04p17050 Brassica napus
A09p57430 Brassica napus
Aa31LG4G9640 Aethionema arabicum
Aa31LG7G14270 Aethionema arabicum
Actinidia00301 Actinidia chinensis
Actinidia01161 Actinidia chinensis
Actinidia10277 Actinidia chinensis
Ah.01g007440 Amaranthus hybridus
Ah.05g170830 Amaranthus hybridus
AL4G12080 Arabidopsis lyrata
AL7G28670 Arabidopsis lyrata
Aqoxy5G01303 Aquilegia oxysepala
Aqoxy6G01437 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.5R195S Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.6TV8QX Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BF0KEW Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.CFQ0TD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D3LV4V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.G922MD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KHU32P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SBU0PK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.SGD688 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UK37ES Arachis hypogaea
AT2G22540 Arabidopsis thaliana
AT4G24540 Arabidopsis thaliana
ATR0104G005 Amborella trichopoda
Atru.chr13.1018 Acer truncatum
Atru.chr3.1252 Acer truncatum
Atru.chr6.1251 Acer truncatum
AUR62003658 Chenopodium quinoa
AUR62012889 Chenopodium quinoa
AUR62017967 Chenopodium quinoa
AUR62019043 Chenopodium quinoa
AUR62027113 Chenopodium quinoa
AUR62027882 Chenopodium quinoa
AUR62043747 Chenopodium quinoa
BcaB08g35097 Brassica carinata
BcaC02g08644 Brassica carinata
BcaC06g32877 Brassica carinata
BcaC07g41049 Brassica carinata
BcaC09g50857 Brassica carinata
BolC1t01913H Brassica oleracea
BolC4t26754H Brassica oleracea
BolC7t45857H Brassica oleracea
BolC8t51622H Brassica oleracea
BraA03t14595Z Brassica rapa
BraA04t17334Z Brassica rapa
BraA09t41135Z Brassica rapa
C04p51780 Brassica napus
C08p40520 Brassica napus
CAN.G1344.4 Capsicum annuum
CAN.G475.33 Capsicum annuum
CAN.G523.13 Capsicum annuum
CANSAT01G0086 Cannabis sativa
CANSAT54G0156 Cannabis sativa
CANSAT54G2898 Cannabis sativa
CARHR113740 Cardamine hirsuta
CARHR231940 Cardamine hirsuta
Carub.0004s0171 Capsella rubella
Carub.0007s1653 Capsella rubella
Ca_02278_v3 Cicer arietinum L.
Ca_16001_v3 Cicer arietinum L.
Ca_28274_v3 Cicer arietinum L.
Ca_28322_v3 Cicer arietinum L.
Ca_30273_v3 Cicer arietinum L.
Cc02_g20960 Coffea canephora
Cc07_g14150 Coffea canephora
Cc10_g15850 Coffea canephora
CDE10G1031 Ceratophyllum demersum
CDE10G1272 Ceratophyllum demersum
Cfa005704 Carpinus fangiana
Cfa005713 Carpinus fangiana
Cfa005718 Carpinus fangiana
Cfa005727 Carpinus fangiana
Cfa005730 Carpinus fangiana
Cfa006887 Carpinus fangiana
Cfa013789 Carpinus fangiana
Ciclev10002707m.g Citrus clementina
Ciclev10026457m.g Citrus clementina
Ciclev10029491m.g Citrus clementina
CiPaw.05G029800 Carya illinoinensis
CiPaw.06G157700 Carya illinoinensis
CiPaw.07G047900 Carya illinoinensis
CiPaw.07G166000 Carya illinoinensis
CiPaw.08G055400 Carya illinoinensis
ClCG01G018380 Citrullus lanatus
ClCG10G009620 Citrullus lanatus
COL.COLO4_27350 Corchorus olitorius
COL.COLO4_32384 Corchorus olitorius
COL.COLO4_35239 Corchorus olitorius
Cpa.g.sc21.11 Carica papaya
Cpa.g.sc55.31 Carica papaya
CsaV3_2G030300 Cucumis sativus L.
CsaV3_4G014770 Cucumis sativus L.
CsaV3_6G045010 Cucumis sativus L.
CSS0000974 Camellia sinensis var. sinensis
CSS0003691 Camellia sinensis var. sinensis
CSS0008173 Camellia sinensis var. sinensis
CSS0010938 Camellia sinensis var. sinensis
CSS0037110 Camellia sinensis var. sinensis
DCAR_014188 Daucus carota
DCAR_026701 Daucus carota
Dinv09577 Davidia involucrata
Dinv13608 Davidia involucrata
Dinv15994 Davidia involucrata
Dinv24150 Davidia involucrata
Dinv42618 Davidia involucrata
Dinv44857 Davidia involucrata
Duzib041G0217 Durio zibethinus
Duzib052G1115 Durio zibethinus
Duzib093G0029 Durio zibethinus
Duzib116G0405 Durio zibethinus
Duzib132G0894 Durio zibethinus
Duzib147G0199 Durio zibethinus
Duzib187G1592 Durio zibethinus
Duzib248G1604 Durio zibethinus
Duzib264G0661 Durio zibethinus
ECA232G2784 Erigeron canadensis
ECA232G3000 Erigeron canadensis
ECA238G2163 Erigeron canadensis
ECA246G3833 Erigeron canadensis
ECA246G4305 Erigeron canadensis
EL10Ac1g01057 Beta vulgaris
EL10Ac6g15210 Beta vulgaris
EL10Ac9g21413 Beta vulgaris
EL10Ac9g22075 Beta vulgaris
Eucgr.C02714 Eucalyptus grandis
Eucgr.F00420 Eucalyptus grandis
Eucgr.F02141 Eucalyptus grandis
Eucgr.F02145 Eucalyptus grandis
Eucgr.F02146 Eucalyptus grandis
Eucgr.I00556 Eucalyptus grandis
FAN04G2310 Fragaria x ananassa
FAN07G1703 Fragaria x ananassa
FAN08G1870 Fragaria x ananassa
FAN12G0239 Fragaria x ananassa
FAN12G2458 Fragaria x ananassa
FAN12G3077 Fragaria x ananassa
FAN12G4174 Fragaria x ananassa
FAN16G2641 Fragaria x ananassa
FAN17G1230 Fragaria x ananassa
FAN19G2039 Fragaria x ananassa
FAN22G0131 Fragaria x ananassa
FAN23G1738 Fragaria x ananassa
FAN25G3389 Fragaria x ananassa
FAN26G0879 Fragaria x ananassa
FAN28G2287 Fragaria x ananassa
FvH4_1g19710 Fragaria vesca
FvH4_3g03630 Fragaria vesca
FvH4_4g27110 Fragaria vesca
FvH4_4g27440 Fragaria vesca
FvH4_5g35400 Fragaria vesca
Glyma.01G023500 Glycine max
Glyma.02G041500 Glycine max
Glyma.06G095700 Glycine max
Glyma.07G181600 Glycine max
Glyma.08G068200 Glycine max
Glyma.13G256900 Glycine max
Glyma.13G257000 Glycine max
Glyma.15G057900 Glycine max
Glyma.15G058000 Glycine max
Gohir.A01G132100 Gossypium hirsutum
Gohir.A03G177200 Gossypium hirsutum
Gohir.A06G032600 Gossypium hirsutum
Gohir.A12G084200 Gossypium hirsutum
Gohir.A13G051200 Gossypium hirsutum
Gohir.D01G117300 Gossypium hirsutum
Gohir.D02G200900 Gossypium hirsutum
Gohir.D06G031800 Gossypium hirsutum
Gohir.D12G016900 Gossypium hirsutum
Gohir.D12G081800 Gossypium hirsutum
Gohir.D13G049800 Gossypium hirsutum
Gorai.002G142700 Gossypium raimondii
Gorai.005G225500 Gossypium raimondii
Gorai.008G017200 Gossypium raimondii
Gorai.008G092300 Gossypium raimondii
Gorai.010G035000 Gossypium raimondii
Gorai.013G055700 Gossypium raimondii
GSVIVG01001701001 Vitis vinifera
GSVIVG01005934001 Vitis vinifera
GSVIVG01009171001 Vitis vinifera
GSVIVG01011300001 Vitis vinifera
GSVIVG01015641001 Vitis vinifera
HanXRQChr05g0163381 Helianthus annuus
HanXRQChr09g0270841 Helianthus annuus
HanXRQChr10g0278101 Helianthus annuus
HanXRQChr13g0405061 Helianthus annuus
HanXRQChr15g0484901 Helianthus annuus
HanXRQChr15g0495861 Helianthus annuus
HanXRQChr16g0503081 Helianthus annuus
Haze_03866 Corylus avellana
Haze_10525 Corylus avellana
Haze_10529 Corylus avellana
Haze_10531 Corylus avellana
Haze_22450 Corylus avellana
Hma1.2p1_0010F.1_g006750 Hydrangea macrophylla
Hma1.2p1_0010F.1_g006770 Hydrangea macrophylla
Hma1.2p1_0119F.1_g056750 Hydrangea macrophylla
Hma1.2p1_1093F.1_g256190 Hydrangea macrophylla
HPP92_004084 Vanilla planifolia
HPP92_004106 Vanilla planifolia
HPP92_005961 Vanilla planifolia
HPP92_013142 Vanilla planifolia
Hund06112 Selenicereus undatus
Hund06457 Selenicereus undatus
Hund16536 Selenicereus undatus
Hund27019 Selenicereus undatus
Lalb_Chr05g0216321 Lupinus albus
Lalb_Chr09g0326011 Lupinus albus
Lalb_Chr10g0102741 Lupinus albus
Lalb_Chr17g0344511 Lupinus albus
Lj2A534T39 Lonicera japonica
Lj2g0003202 Lotus japonicus
Lj4C88G16 Lonicera japonica
Lj4g0022839 Lotus japonicus
LjContig00408g0008293 Lotus japonicus
Lsat_1_v5_gn_2_70640 Lactuca sativa
Lsat_1_v5_gn_3_62800 Lactuca sativa
Lsat_1_v5_gn_4_108241 Lactuca sativa
Lsat_1_v5_gn_6_105061 Lactuca sativa
Lsat_1_v5_gn_9_75300 Lactuca sativa
Manes.02G145300 Manihot esculenta
Manes.07G038600 Manihot esculenta
Manes.10G099000 Manihot esculenta
Manes.12G126800 Manihot esculenta
Manes.18G059200 Manihot esculenta
MBI06_g07363_MAGBIO Magnolia biondii
MD01G1038600 Malus domestica
MD08G1196900 Malus domestica
MD08G1197000 Malus domestica
MD08G1197200 Malus domestica
MD08G1197300 Malus domestica
MD15G1313200 Malus domestica
MD15G1384500 Malus domestica
MD15G1384600 Malus domestica
Medtr4g093970 Medicago truncatula
Medtr5g032150 Medicago truncatula
Medtr5g032520 Medicago truncatula
Medtr5g066180 Medicago truncatula
MELO3C007716.2 Cucumis melo
MELO3C011093.2 Cucumis melo
MELO3C018055.2 Cucumis melo
Migut.A00649 Erythranthe guttata
Migut.A00653 Erythranthe guttata
Migut.A00655 Erythranthe guttata
Migut.B00557 Erythranthe guttata
Migut.H02293 Erythranthe guttata
Migut.H02296 Erythranthe guttata
Migut.H02298 Erythranthe guttata
MSTRG.16616 Avicennia marina
MSTRG.16618 Avicennia marina
MSTRG.23376 Avicennia marina
MSTRG.3735 Avicennia marina
MSTRG.5284 Avicennia marina
Nitab4.5_0000131g0290 Nicotiana tabacum
Nitab4.5_0000131g0310 Nicotiana tabacum
Nitab4.5_0000902g0340 Nicotiana tabacum
Nitab4.5_0001026g0080 Nicotiana tabacum
Nitab4.5_0001468g0090 Nicotiana tabacum
Nitab4.5_0003709g0030 Nicotiana tabacum
Nitab4.5_0004153g0060 Nicotiana tabacum
Nitab4.5_0005565g0020 Nicotiana tabacum
Nitab4.5_0009469g0030 Nicotiana tabacum
Nn1g05562 Nelumbo nucifera
Nn5g29891 Nelumbo nucifera
Oeu012464.1 Olea europaea
Oeu014193.3 Olea europaea
Oeu029679.2 Olea europaea
Oeu043463.1 Olea europaea
Oeu043466.1 Olea europaea
Oeu046544.1 Olea europaea
Oeu053597.1 Olea europaea
Oeu053598.1 Olea europaea
Os02g0761000 Oryza sativa ssp. japonica
Os03g0186600 Oryza sativa ssp. japonica
Os06g0217300 Oryza sativa ssp. japonica
Peaxi162Scf00191g00114 Petunia axillaris
Peaxi162Scf00299g00717 Petunia axillaris
Peaxi162Scf00454g00519 Petunia axillaris
PGR031G1619 Punica granatum
PGR031G1983 Punica granatum
PGR042G3870 Punica granatum
PGR102G1134 Punica granatum
PGR142G1238 Punica granatum
PGR142G1651 Punica granatum
PGR142G1732 Punica granatum
PGR142G2000 Punica granatum
PGSC0003DMG400009363 Solanum tuberosum
PGSC0003DMG400016203 Solanum tuberosum
PGSC0003DMG400033570 Solanum tuberosum
Phvul.002G147600 Phaseolus vulgaris
Phvul.002G212450 Phaseolus vulgaris
Phvul.006G202200 Phaseolus vulgaris
Phvul.006G202300 Phaseolus vulgaris
Phvul.009G037300 Phaseolus vulgaris
Potri.002G105600 Populus trichocarpa
Potri.005G155300 Populus trichocarpa
Potri.007G010800 Populus trichocarpa
Potri.007G115000 Populus trichocarpa
Potri.007G115100 Populus trichocarpa
Potri.007G115200 Populus trichocarpa
Potri.017G044200 Populus trichocarpa
Potri.017G044500 Populus trichocarpa
Prupe.1G531100 Prunus persica
Prupe.1G531400 Prunus persica
Prupe.1G531600 Prunus persica
Prupe.1G531700 Prunus persica
Prupe.6G199000 Prunus persica
Prupe.8G069300 Prunus persica
Psat0s73g0040 Pisum sativum
Psat2g080200 Pisum sativum
Psat7g100960 Pisum sativum
Psat7g101000 Pisum sativum
PSO017G0006 Papaver somniferum
PSO170G2966 Papaver somniferum
PSO541G3874 Papaver somniferum
PSO675G0208 Papaver somniferum
QL06p035702 Quercus lobata
QL09p017707 Quercus lobata
QL11p024222 Quercus lobata
QL11p024294 Quercus lobata
QL11p024349 Quercus lobata
QL11p024495 Quercus lobata
QL11p024571 Quercus lobata
QL11p024586 Quercus lobata
QL11p024634 Quercus lobata
QL11p024683 Quercus lobata
QL11p024704 Quercus lobata
QL11p024746 Quercus lobata
QL11p024906 Quercus lobata
QL11p024929 Quercus lobata
RcHm_v2.0_Chr2g0111271 Rosa chinensis
RcHm_v2.0_Chr4g0434911 Rosa chinensis
RcHm_v2.0_Chr7g0205071 Rosa chinensis
RcHm_v2.0_Chr7g0236801 Rosa chinensis
RcHm_v2.0_Chr7g0236811 Rosa chinensis
Rhsim06G0071900 Rhododendron simsii
Rhsim07G0211700 Rhododendron simsii
Rhsim08G0016300 Rhododendron simsii
Rhsim11G0144300 Rhododendron simsii
Sabra02G0082900 Salix brachista
Sabra07G0008300 Salix brachista
Sabra07G0093700 Salix brachista
Sabra07G0093900 Salix brachista
Sabra17G0030200 Salix brachista
SalBow3G0140 Salvia bowleyana
SalBow3G2396 Salvia bowleyana
SalBow8G1950 Salvia bowleyana
Sc01g0001140 Simmondsia chinensis
Sc03g0000300 Simmondsia chinensis
Sc18g0006550 Simmondsia chinensis
Sc23g0000710 Simmondsia chinensis
Sed0012619 Sechium edule
Sed0016270 Sechium edule
Sed0017033 Sechium edule
Sed0022681 Sechium edule
Sed0025303 Sechium edule
Sed0027590 Sechium edule
SEGI_21167 Sequoiadendron giganteum
SEGI_36345 Sequoiadendron giganteum
SEGI_40177 Sequoiadendron giganteum
SGA_v2.0_scaffold108G30915 Striga asiatica
SGA_v2.0_scaffold45G17235 Striga asiatica
SGA_v2.0_scaffold83G26372 Striga asiatica
SHI21804 Sapria himalayana
SHI21805 Sapria himalayana
Solyc01g105800.4 Solanum lycopersicum
Solyc04g076280.4 Solanum lycopersicum
Solyc11g010570.2 Solanum lycopersicum
Sopen01g048260 Solanum pennellii
Sopen11g005370 Solanum pennellii
Sp4g01590 Schrenkiella parvula
Sp7g22540 Schrenkiella parvula
TAR376G0963 Trochodendron aralioides
TAR381G1243 Trochodendron aralioides
TAR625G0300 Trochodendron aralioides
TAR628G1136 Trochodendron aralioides
THA.LOC104799797 Tarenaya hassleriana
THA.LOC104801710 Tarenaya hassleriana
THA.LOC104804177 Tarenaya hassleriana
THA.LOC104806856 Tarenaya hassleriana
THA.LOC104824912 Tarenaya hassleriana
Thecc.01G091300 Theobroma cacao
Thecc.02G129600 Theobroma cacao
Thecc.08G070300 Theobroma cacao
Thhalv10000308m.g Eutrema salsugineum
Thhalv10026757m.g Eutrema salsugineum
TPR.G2836 Trifolium pratense
TPR.G29984 Trifolium pratense
TWI12G1419 Tripterygium wilfordii
TWI23G1028 Tripterygium wilfordii
TWI53G0436 Tripterygium wilfordii
TWI56G0539 Tripterygium wilfordii
TWI59G0072 Tripterygium wilfordii
TWI74G0627 Tripterygium wilfordii
vmacro01856 Vaccinium macrocarpon
vmacro04655 Vaccinium macrocarpon
vmacro18560 Vaccinium macrocarpon
vmacro21336 Vaccinium macrocarpon
vmacro21337 Vaccinium macrocarpon
VMungo0251G0149 Vigna mungo
VMungo0540G0229 Vigna mungo
VMungo1215G0475 Vigna mungo
VMungo1309G1241 Vigna mungo
Zm00001eb006480 Zea mays
Zm00001eb193790 Zea mays
Zm00001eb255670 Zea mays
Zm00001eb372960 Zea mays

User provided reference genes

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