Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p16910 Brassica napus
A01p26740 Brassica napus
Aa31LG4G14210 Aethionema arabicum
Aa31LG6G8060 Aethionema arabicum
Aa31LG6G8070 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_228.4031 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_228.4808 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.2361 Anthoceros agrestis
Actinidia24152 Actinidia chinensis
Ah.01g014130 Amaranthus hybridus
Ah.04g149610 Amaranthus hybridus
Ah.04g161530 Amaranthus hybridus
Ah.06g190590 Amaranthus hybridus
AL5G23340 Arabidopsis lyrata
AL7G27430 Arabidopsis lyrata
Aqoxy213s001 Aquilegia oxysepala
Aqoxy2G00543_Aqoxy2G00544 Aquilegia oxysepala
Aqoxy2G00545 Aquilegia oxysepala
Aqoxy2G00546 Aquilegia oxysepala
Aqoxy2G00547_Aqoxy2G00548 Aquilegia oxysepala
Aqoxy2G01627 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4585DL Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.H5NNU3 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KD1GVP Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZSH2T8 Arachis hypogaea
AT3G44880 Arabidopsis thaliana
AT4G25650 Arabidopsis thaliana
ATR0043G010 Amborella trichopoda
ATR0043G038 Amborella trichopoda
ATR0737G111 Amborella trichopoda
Atru.chr2.672 Acer truncatum
Atru.chr2.673 Acer truncatum
Atru.chr2.675 Acer truncatum
Atru.chr3.2069 Acer truncatum
Atru.chr3.3503 Acer truncatum
Atru.chr4.1730 Acer truncatum
AUR62000005 Chenopodium quinoa
AUR62000006 Chenopodium quinoa
AUR62014978 Chenopodium quinoa
AUR62019174 Chenopodium quinoa
AUR62019175 Chenopodium quinoa
AUR62029149 Chenopodium quinoa
AUR62029155 Chenopodium quinoa
BcaB05g23052 Brassica carinata
BcaC09g49659 Brassica carinata
BolC1t02044H Brassica oleracea
BolC1t03382H Brassica oleracea
BraA01t01643Z Brassica rapa
BraA01t02603Z Brassica rapa
C01p21190 Brassica napus
C01p34130 Brassica napus
CAN.G1563.12 Capsicum annuum
CAN.G1563.13 Capsicum annuum
CAN.G546.53 Capsicum annuum
CANSAT11G0354 Cannabis sativa
CANSAT11G1143 Cannabis sativa
CANSAT11G1678 Cannabis sativa
CANSAT11G1975 Cannabis sativa
CANSAT11G2536 Cannabis sativa
CANSAT64G1016 Cannabis sativa
CARHR151160 Cardamine hirsuta
CARHR233090 Cardamine hirsuta
Carub.0005s1062 Capsella rubella
Carub.0007s1532 Capsella rubella
Carub.0238s0002 Capsella rubella
Ca_17945_v3 Cicer arietinum L.
Ca_19325_v3 Cicer arietinum L.
CBR_g26035 Chara braunii
CBR_g37742 Chara braunii
CBR_g49638 Chara braunii
CBR_g49646 Chara braunii
CBR_g49649 Chara braunii
CBR_g53748 Chara braunii
CBR_g81620 Chara braunii
Cc01_g00670 Coffea canephora
Cc01_g00730 Coffea canephora
Cc01_g10220 Coffea canephora
CDE02G2320 Ceratophyllum demersum
CDE02G4623 Ceratophyllum demersum
CDE07G1511 Ceratophyllum demersum
Cfa009573 Carpinus fangiana
Cfa009576 Carpinus fangiana
Cfa010140 Carpinus fangiana
Cfa010141 Carpinus fangiana
Cfa010142 Carpinus fangiana
Cfa021185 Carpinus fangiana
Cfa021220 Carpinus fangiana
Cfa021221 Carpinus fangiana
Ciclev10014836m.g Citrus clementina
Ciclev10014840m.g Citrus clementina
Ciclev10028147m.g Citrus clementina
CiPaw.13G144900 Carya illinoinensis
CiPaw.14G107000 Carya illinoinensis
CiPaw.14G135400 Carya illinoinensis
CiPaw.14G135500 Carya illinoinensis
ClCG01G013870 Citrullus lanatus
ClCG03G014420 Citrullus lanatus
ClCG03G014430 Citrullus lanatus
ClCG03G014440 Citrullus lanatus
COL.COLO4_00097 Corchorus olitorius
COL.COLO4_18918 Corchorus olitorius
COL.COLO4_18919 Corchorus olitorius
COL.COLO4_18920 Corchorus olitorius
COL.COLO4_19206 Corchorus olitorius
COL.COLO4_35035 Corchorus olitorius
COL.COLO4_35036 Corchorus olitorius
COL.COLO4_35040 Corchorus olitorius
Cpa.g.sc119.59 Carica papaya
Cpa.g.sc119.60 Carica papaya
Cpa.g.sc47.4 Carica papaya
Cre03.g173450 Chlamydomonas reinhardtii
Cre06.g278245 Chlamydomonas reinhardtii
Cre06.g305650 Chlamydomonas reinhardtii
Cre10.g450550 Chlamydomonas reinhardtii
Cre11.g476500 Chlamydomonas reinhardtii
Cre13.g583050 Chlamydomonas reinhardtii
Cre17.g724600 Chlamydomonas reinhardtii
Cre17.g724700 Chlamydomonas reinhardtii
CsaV3_1G014100 Cucumis sativus L.
CsaV3_1G014120 Cucumis sativus L.
CsaV3_1G041770 Cucumis sativus L.
CsaV3_1G041780 Cucumis sativus L.
CsaV3_1G041790 Cucumis sativus L.
CsaV3_1G041800 Cucumis sativus L.
CsaV3_1G041810 Cucumis sativus L.
CSS0024763 Camellia sinensis var. sinensis
CSS0032816 Camellia sinensis var. sinensis
DCAR_022680 Daucus carota
DCAR_029866 Daucus carota
DCAR_029867 Daucus carota
Dinv16229 Davidia involucrata
Duzib150G0254 Durio zibethinus
Duzib150G0831 Durio zibethinus
Duzib168G0121 Durio zibethinus
ECA238G2447 Erigeron canadensis
ECA238G2560 Erigeron canadensis
ECA238G3129 Erigeron canadensis
ECA238G3460 Erigeron canadensis
ECA238G3584 Erigeron canadensis
ECA238G4704 Erigeron canadensis
ECA248G1672 Erigeron canadensis
EL10Ac4g10372 Beta vulgaris
EL10Ac9g22627 Beta vulgaris
Eucgr.B03924 Eucalyptus grandis
Eucgr.J01727 Eucalyptus grandis
Eucgr.J01820 Eucalyptus grandis
Eucgr.J01823 Eucalyptus grandis
FAN01G0736 Fragaria x ananassa
FAN01G1212 Fragaria x ananassa
FAN01G2243 Fragaria x ananassa
FAN03G0986 Fragaria x ananassa
FAN03G1826 Fragaria x ananassa
FAN06G4677 Fragaria x ananassa
FAN10G2913 Fragaria x ananassa
FAN10G4042 Fragaria x ananassa
FAN11G1509 Fragaria x ananassa
FAN11G3213 Fragaria x ananassa
FAN16G0444 Fragaria x ananassa
FAN16G3718 Fragaria x ananassa
FAN21G1808 Fragaria x ananassa
FAN21G2572 Fragaria x ananassa
FAN21G3468 Fragaria x ananassa
FAN25G1127 Fragaria x ananassa
FAN25G1442 Fragaria x ananassa
FAN25G3342 Fragaria x ananassa
FvH4_3g30560 Fragaria vesca
FvH4_3g45360 Fragaria vesca
FvH4_3g45400 Fragaria vesca
FvH4_3g45401 Fragaria vesca
FvH4_7g02720 Fragaria vesca
FvH4_7g02730 Fragaria vesca
FvH4_7g02731 Fragaria vesca
Glyma.05G156300 Glycine max
Glyma.08G114400 Glycine max
Glyma.11G192300 Glycine max
Glyma.12G082100 Glycine max
Gohir.A07G105000 Gossypium hirsutum
Gohir.A08G010950 Gossypium hirsutum
Gohir.A08G011000 Gossypium hirsutum
Gohir.A08G011100 Gossypium hirsutum
Gohir.D07G109100 Gossypium hirsutum
Gohir.D08G021250 Gossypium hirsutum
Gohir.D08G021300 Gossypium hirsutum
Gohir.D08G021400 Gossypium hirsutum
Gohir.D08G021500 Gossypium hirsutum
Gorai.001G117200 Gossypium raimondii
Gorai.004G016200 Gossypium raimondii
Gorai.004G016300 Gossypium raimondii
Gorai.004G016400 Gossypium raimondii
GSVIVG01025437001 Vitis vinifera
GSVIVG01025438001 Vitis vinifera
GSVIVG01025441001 Vitis vinifera
GSVIVG01025444001 Vitis vinifera
GSVIVG01025446001 Vitis vinifera
GSVIVG01031457001 Vitis vinifera
HanXRQChr03g0090341 Helianthus annuus
HanXRQChr03g0090371 Helianthus annuus
HanXRQChr06g0179321 Helianthus annuus
HanXRQChr06g0179331 Helianthus annuus
HanXRQChr10g0278441 Helianthus annuus
HanXRQChr10g0278451 Helianthus annuus
HanXRQChr11g0346011 Helianthus annuus
HanXRQChr14g0434611 Helianthus annuus
HanXRQChr14g0434621 Helianthus annuus
HanXRQChr14g0435001 Helianthus annuus
HanXRQChr14g0435011 Helianthus annuus
HanXRQChr14g0435021 Helianthus annuus
HanXRQChr14g0435031 Helianthus annuus
HanXRQChr14g0435201 Helianthus annuus
HanXRQChr14g0435211 Helianthus annuus
HanXRQChr14g0435231 Helianthus annuus
HanXRQChr14g0435281 Helianthus annuus
HanXRQChr14g0435291 Helianthus annuus
HanXRQChr14g0435311 Helianthus annuus
HanXRQChr14g0435321 Helianthus annuus
HanXRQChr14g0436431 Helianthus annuus
HanXRQChr14g0437751 Helianthus annuus
HanXRQChr14g0437761 Helianthus annuus
HanXRQChr14g0437771 Helianthus annuus
HanXRQChr14g0437781 Helianthus annuus
HanXRQChr14g0437811 Helianthus annuus
HanXRQChr14g0437821 Helianthus annuus
HanXRQChr14g0437831 Helianthus annuus
HanXRQChr14g0458101 Helianthus annuus
Haze_11468 Corylus avellana
Haze_22954 Corylus avellana
Haze_23528 Corylus avellana
Haze_23533 Corylus avellana
Hma1.2p1_0772F.1_g215990 Hydrangea macrophylla
Hma1.2p1_0772F.1_g216000 Hydrangea macrophylla
Hma1.2p1_0843F.1_g227360 Hydrangea macrophylla
HPP92_008396 Vanilla planifolia
HPP92_017541 Vanilla planifolia
HPP92_017542 Vanilla planifolia
Hund07585 Selenicereus undatus
Hund07587 Selenicereus undatus
Hund07589 Selenicereus undatus
Lalb_Chr01g0004621 Lupinus albus
Lalb_Chr13g0295041 Lupinus albus
Lj1A530G29 Lonicera japonica
Lj1C213G3 Lonicera japonica
Lj1C538G6 Lonicera japonica
Lj2A1005T32 Lonicera japonica
Lj2A729T35 Lonicera japonica
Lj2C729T4 Lonicera japonica
Lj3g0004371 Lotus japonicus
Lj4g0005676 Lotus japonicus
Lj4g0015134 Lotus japonicus
Lj6g0004877 Lotus japonicus
Lj6g0015066 Lotus japonicus
Lsat_1_v5_gn_1_64861 Lactuca sativa
Lsat_1_v5_gn_1_64901 Lactuca sativa
Lsat_1_v5_gn_2_52580 Lactuca sativa
Manes.04G012500 Manihot esculenta
Manes.15G107301 Manihot esculenta
Manes.15G107401 Manihot esculenta
Manes.15G107500 Manihot esculenta
Manes.15G107600 Manihot esculenta
Manes.15G107700 Manihot esculenta
Mapoly0028s0113 Marchantia polymorpha
Mapoly0037s0111 Marchantia polymorpha
Mapoly0046s0012 Marchantia polymorpha
Mapoly0047s0026 Marchantia polymorpha
MBI04_g09724_MAGBIO Magnolia biondii
MCO11G354 Micromonas commoda
MCO15G515 Micromonas commoda
MCO16G103 Micromonas commoda
MD03G1005500 Malus domestica
MD11G1008100 Malus domestica
MD11G1008200 Malus domestica
MD11G1149200 Malus domestica
Medtr4g057200 Medicago truncatula
Medtr8g085790 Medicago truncatula
Medtr8g085810 Medicago truncatula
Medtr8g085820 Medicago truncatula
Medtr8g085840 Medicago truncatula
MELO3C004867.2 Cucumis melo
MELO3C015590.2 Cucumis melo
MELO3C015592.2 Cucumis melo
MELO3C015593.2 Cucumis melo
MELO3C015595.2 Cucumis melo
MELO3C029304.2 Cucumis melo
MELO3C035541.2 Cucumis melo
Migut.D02297 Erythranthe guttata
Migut.D02539 Erythranthe guttata
Migut.D02549 Erythranthe guttata
MSTRG.21084 Avicennia marina
Nitab4.5_0000173g0160 Nicotiana tabacum
Nitab4.5_0002162g0210 Nicotiana tabacum
Nitab4.5_0003134g0120 Nicotiana tabacum
Nitab4.5_0009628g0010 Nicotiana tabacum
Nn2g13867 Nelumbo nucifera
Oeu007728.1 Olea europaea
Oeu034670.1 Olea europaea
Oeu059668.1 Olea europaea
Os03g0146400 Oryza sativa ssp. japonica
Os03g0805600 Oryza sativa ssp. japonica
Os03g0805700 Oryza sativa ssp. japonica
Os03g0805900 Oryza sativa ssp. japonica
Os03g0806300 Oryza sativa ssp. japonica
Peaxi162Scf00502g00713 Petunia axillaris
Peaxi162Scf00502g00714 Petunia axillaris
Peaxi162Scf00983g00004 Petunia axillaris
PGR102G3025 Punica granatum
PGR119G0075 Punica granatum
PGSC0003DMG400000457 Solanum tuberosum
PGSC0003DMG400002967 Solanum tuberosum
PGSC0003DMG400010641 Solanum tuberosum
Phvul.002G236600 Phaseolus vulgaris
Phvul.002G236700 Phaseolus vulgaris
Phvul.011G086700 Phaseolus vulgaris
Potri.001G005700 Populus trichocarpa
Potri.001G005900 Populus trichocarpa
Potri.003G218900 Populus trichocarpa
Potri.003G219000 Populus trichocarpa
Potri.003G219400 Populus trichocarpa
Potri.003G219550 Populus trichocarpa
Potri.004G217200 Populus trichocarpa
Potri.009G004100 Populus trichocarpa
Pp3c1_40790 Physcomitrium patens
Pp3c2_6220 Physcomitrium patens
Pp3c3_19130 Physcomitrium patens
PRCOL_00006127 Prasinoderma coloniale
PRCOL_00006185 Prasinoderma coloniale
Prupe.6G005300 Prunus persica
Prupe.6G113600 Prunus persica
Psat7g072080 Pisum sativum
Psat7g223720 Pisum sativum
PSO339G1579 Papaver somniferum
PSO339G1934 Papaver somniferum
PSO384G3103 Papaver somniferum
PSO801G0093 Papaver somniferum
QL01p008547 Quercus lobata
QL01p008558 Quercus lobata
QL01p008572 Quercus lobata
QL01p008654 Quercus lobata
QL01p008665 Quercus lobata
QL01p014896 Quercus lobata
RcHm_v2.0_Chr1g0321981 Rosa chinensis
RcHm_v2.0_Chr5g0056561 Rosa chinensis
RcHm_v2.0_Chr5g0083181 Rosa chinensis
RcHm_v2.0_Chr5g0083211 Rosa chinensis
Rhsim01G0184700 Rhododendron simsii
Rhsim01G0184800 Rhododendron simsii
Rhsim13G0101100 Rhododendron simsii
Sabra01G0004100 Salix brachista
Sabra01G0004200 Salix brachista
Sabra01G0004300 Salix brachista
Sabra03G0163300 Salix brachista
Sabra03G0163400 Salix brachista
Sabra04G0147900 Salix brachista
SalBow2G0280 Salvia bowleyana
SalBow2G0307 Salvia bowleyana
SalBow2G1502 Salvia bowleyana
SalBow2G2527 Salvia bowleyana
SalBow6G5394 Salvia bowleyana
Sc16g0012170 Simmondsia chinensis
Sc21g0000340 Simmondsia chinensis
Sed0005522 Sechium edule
Sed0018344 Sechium edule
Sed0024158 Sechium edule
SEGI_07370 Sequoiadendron giganteum
SEGI_08762 Sequoiadendron giganteum
SEGI_17342 Sequoiadendron giganteum
SEGI_25545 Sequoiadendron giganteum
SEGI_32230 Sequoiadendron giganteum
SGA_v2.0_scaffold27G11573 Striga asiatica
SGA_v2.0_scaffold6G03402 Striga asiatica
SMO139G0147 Selaginella moellendorffii
SMO348G0071 Selaginella moellendorffii
Solyc04g039870.3 Solanum lycopersicum
Solyc04g039880.3 Solanum lycopersicum
Solyc04g040160.4 Solanum lycopersicum
Solyc11g066440.2 Solanum lycopersicum
Sopen04g009970 Solanum pennellii
Sopen11g026190 Solanum pennellii
Sp5g16340 Schrenkiella parvula
Sp7g23690 Schrenkiella parvula
TAR633G2303 Trochodendron aralioides
TAR633G2395 Trochodendron aralioides
TAR633G2538 Trochodendron aralioides
TAR633G2596 Trochodendron aralioides
THA.LOC104799047 Tarenaya hassleriana
THA.LOC104810883 Tarenaya hassleriana
THA.LOC104811071 Tarenaya hassleriana
Thecc.09G208200 Theobroma cacao
Thecc.09G298000 Theobroma cacao
Thhalv10002475m.g Eutrema salsugineum
Thhalv10024869m.g Eutrema salsugineum
TPR.G24382 Trifolium pratense
TPR.G34406 Trifolium pratense
TPR.G36804 Trifolium pratense
TWI32G1219 Tripterygium wilfordii
TWI60G0221 Tripterygium wilfordii
TWI60G0780 Tripterygium wilfordii
TWI60G1063 Tripterygium wilfordii
TWI75G1305 Tripterygium wilfordii
unitig_0.g1496 Utricularia gibba
unitig_22.g5859 Utricularia gibba
unitig_747.g21970 Utricularia gibba
vmacro03252 Vaccinium macrocarpon
vmacro12605 Vaccinium macrocarpon
VMungo0251G0475 Vigna mungo
VMungo1127G2205 Vigna mungo
Zm00001eb003760 Zea mays
Zm00001eb061510 Zea mays
Zm00001eb073210 Zea mays
Zm00001eb073220 Zea mays
Zm00001eb081040 Zea mays
Zm00001eb081050 Zea mays
Zm00001eb260500 Zea mays
Zm00001eb359770 Zea mays

User provided reference genes

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