Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
AagrBONN_evm.TU.Sc2ySwM_344.818 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.969 Anthoceros agrestis
Actinidia06987 Actinidia chinensis
Actinidia11697 Actinidia chinensis
Actinidia14616 Actinidia chinensis
Actinidia15682 Actinidia chinensis
Actinidia17732 Actinidia chinensis
Actinidia22595 Actinidia chinensis
Actinidia35612 Actinidia chinensis
Aqoxy1G00568 Aquilegia oxysepala
Aqoxy1G03689 Aquilegia oxysepala
Aqoxy1G03691 Aquilegia oxysepala
Aqoxy1G03692 Aquilegia oxysepala
Aqoxy1G03695 Aquilegia oxysepala
Aqoxy2G02414 Aquilegia oxysepala
Aqoxy4G00196 Aquilegia oxysepala
Aqoxy6G00900 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.3DT8QY Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.8LB7BZ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BELI5P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BUE60H Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.D8JT6M Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.GIRG4P Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HIUE3G Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.N8WSNB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V020SN Arachis hypogaea
ATR0213G005 Amborella trichopoda
ATR0225G020 Amborella trichopoda
ATR0796G097 Amborella trichopoda
ATR1145G047 Amborella trichopoda
Atru.chr10.1489 Acer truncatum
Atru.chr12.1515 Acer truncatum
Atru.chr13.604 Acer truncatum
CAN.G1248.4 Capsicum annuum
CAN.G1569.19 Capsicum annuum
CAN.G371.76 Capsicum annuum
CAN.G371.78 Capsicum annuum
CAN.G371.80 Capsicum annuum
CAN.G79.17 Capsicum annuum
CAN.G79.21 Capsicum annuum
CANSAT25G1009 Cannabis sativa
CANSAT25G2737 Cannabis sativa
CANSAT35G1913 Cannabis sativa
CANSAT54G3052 Cannabis sativa
Ca_00490_v3 Cicer arietinum L.
Ca_09267_v3 Cicer arietinum L.
Ca_10213_v3 Cicer arietinum L.
Ca_15977_v3 Cicer arietinum L.
Ca_17880_v3 Cicer arietinum L.
Ca_21359_v3 Cicer arietinum L.
Cc01_g06540 Coffea canephora
Cc01_g06870 Coffea canephora
Cc01_g06890 Coffea canephora
Cc01_g06900 Coffea canephora
Cc02_g16010 Coffea canephora
Cc02_g36020 Coffea canephora
Cc10_g03760 Coffea canephora
Cfa015758 Carpinus fangiana
Ciclev10003139m.g Citrus clementina
Ciclev10028084m.g Citrus clementina
Ciclev10029865m.g Citrus clementina
Ciclev10030352m.g Citrus clementina
CiPaw.01G126900 Carya illinoinensis
CiPaw.10G098900 Carya illinoinensis
CiPaw.15G065900 Carya illinoinensis
CiPaw.16G050800 Carya illinoinensis
ClCG02G014610 Citrullus lanatus
ClCG08G015530 Citrullus lanatus
COL.COLO4_05476 Corchorus olitorius
COL.COLO4_22833 Corchorus olitorius
COL.COLO4_26435 Corchorus olitorius
COL.COLO4_26436 Corchorus olitorius
COL.COLO4_26437 Corchorus olitorius
Cpa.g.sc17.149 Carica papaya
Cpa.g.sc48.228 Carica papaya
CsaV3_2G007400 Cucumis sativus L.
CsaV3_2G028250 Cucumis sativus L.
CsaV3_6G051180 Cucumis sativus L.
CSS0001113 Camellia sinensis var. sinensis
CSS0004512 Camellia sinensis var. sinensis
CSS0006764 Camellia sinensis var. sinensis
CSS0008519 Camellia sinensis var. sinensis
CSS0014424 Camellia sinensis var. sinensis
CSS0016112 Camellia sinensis var. sinensis
CSS0017041 Camellia sinensis var. sinensis
CSS0017969 Camellia sinensis var. sinensis
CSS0019654 Camellia sinensis var. sinensis
CSS0027327 Camellia sinensis var. sinensis
CSS0030530 Camellia sinensis var. sinensis
CSS0033290 Camellia sinensis var. sinensis
CSS0034065 Camellia sinensis var. sinensis
CSS0046304 Camellia sinensis var. sinensis
DCAR_001881 Daucus carota
DCAR_003966 Daucus carota
DCAR_008782 Daucus carota
DCAR_012763 Daucus carota
DCAR_012764 Daucus carota
DCAR_020119 Daucus carota
DCAR_023421 Daucus carota
DCAR_023422 Daucus carota
DCAR_025309 Daucus carota
DCAR_026924 Daucus carota
DCAR_026925 Daucus carota
DCAR_031625 Daucus carota
Dinv05782 Davidia involucrata
Dinv24525 Davidia involucrata
Dinv36005 Davidia involucrata
Dinv36134 Davidia involucrata
Dinv39350 Davidia involucrata
Duzib093G0597 Durio zibethinus
Duzib116G0775 Durio zibethinus
Duzib168G0114 Durio zibethinus
Duzib235G0552 Durio zibethinus
ECA232G3443 Erigeron canadensis
ECA236G2768 Erigeron canadensis
ECA236G4117 Erigeron canadensis
Eucgr.B01831 Eucalyptus grandis
Eucgr.B01888 Eucalyptus grandis
Eucgr.E02847 Eucalyptus grandis
Eucgr.F00037 Eucalyptus grandis
Eucgr.H04144 Eucalyptus grandis
FAN02G0326 Fragaria x ananassa
FAN05G3595 Fragaria x ananassa
FAN09G0552 Fragaria x ananassa
FAN11G3588 Fragaria x ananassa
FAN15G2250 Fragaria x ananassa
FAN17G1957 Fragaria x ananassa
FAN20G0674 Fragaria x ananassa
FAN20G2462 Fragaria x ananassa
FAN21G0438 Fragaria x ananassa
FAN21G1073 Fragaria x ananassa
FAN25G3629 Fragaria x ananassa
FAN27G2993 Fragaria x ananassa
FvH4_2g40690 Fragaria vesca
FvH4_3g06770 Fragaria vesca
FvH4_4g21811 Fragaria vesca
FvH4_4g21812 Fragaria vesca
FvH4_6g08650 Fragaria vesca
Glyma.03G227500 Glycine max
Glyma.04G036100 Glycine max
Glyma.05G163000 Glycine max
Glyma.06G036200 Glycine max
Glyma.08G120500 Glycine max
Glyma.10G142000 Glycine max
Glyma.13G116900 Glycine max
Glyma.13G223800 Glycine max
Glyma.15G088200 Glycine max
Glyma.17G043000 Glycine max
Glyma.19G224400 Glycine max
Glyma.20G090400 Glycine max
Gohir.A05G072450 Gossypium hirsutum
Gohir.A05G199300 Gossypium hirsutum
Gohir.A05G199400 Gossypium hirsutum
Gohir.A06G123202 Gossypium hirsutum
Gohir.A11G275800 Gossypium hirsutum
Gohir.D05G075250 Gossypium hirsutum
Gohir.D05G202200 Gossypium hirsutum
Gohir.D05G202300 Gossypium hirsutum
Gohir.D06G139900 Gossypium hirsutum
Gohir.D11G286200 Gossypium hirsutum
Gorai.007G309500 Gossypium raimondii
Gorai.009G076600 Gossypium raimondii
Gorai.009G208100 Gossypium raimondii
Gorai.009G208200 Gossypium raimondii
Gorai.010G163300 Gossypium raimondii
GSVIVG01009579001 Vitis vinifera
GSVIVG01031343001 Vitis vinifera
HanXRQChr04g0112271 Helianthus annuus
HanXRQChr04g0112301 Helianthus annuus
HanXRQChr04g0112311 Helianthus annuus
HanXRQChr04g0116181 Helianthus annuus
HanXRQChr06g0181771 Helianthus annuus
HanXRQChr10g0279231 Helianthus annuus
HanXRQChr15g0472231 Helianthus annuus
HanXRQChr15g0472261 Helianthus annuus
Haze_00744 Corylus avellana
Haze_00745 Corylus avellana
Haze_05442 Corylus avellana
Haze_15010 Corylus avellana
Haze_17582 Corylus avellana
Haze_23274 Corylus avellana
Hma1.2p1_0260F.1_g104590 Hydrangea macrophylla
Hma1.2p1_0759F.1_g213785 Hydrangea macrophylla
Hma1.2p1_0759F.1_g213820 Hydrangea macrophylla
Hma1.2p1_2355F.1_g320540 Hydrangea macrophylla
HPP92_019605 Vanilla planifolia
HPP92_022979 Vanilla planifolia
Lalb_Chr02g0147431 Lupinus albus
Lalb_Chr02g0147441 Lupinus albus
Lalb_Chr04g0260281 Lupinus albus
Lalb_Chr11g0062491 Lupinus albus
Lalb_Chr21g0309981 Lupinus albus
Lalb_Chr23g0266851 Lupinus albus
Lj1g0008581 Lotus japonicus
Lj1g0010101 Lotus japonicus
Lj2A314T76 Lonicera japonica
Lj2A314T80 Lonicera japonica
Lj4A49T78 Lonicera japonica
Lj4C49T14 Lonicera japonica
Lj4C892T4 Lonicera japonica
Lj4g0007723 Lotus japonicus
Lj5g0013844 Lotus japonicus
Lj5P600T45 Lonicera japonica
Lj6A704T53 Lonicera japonica
Lj6g0017910 Lotus japonicus
Lj9C238T2 Lonicera japonica
Lsat_1_v5_gn_4_123120 Lactuca sativa
Lsat_1_v5_gn_7_26880 Lactuca sativa
Lsat_1_v5_gn_9_85480 Lactuca sativa
Lsat_1_v5_gn_9_85660 Lactuca sativa
Manes.05G169400 Manihot esculenta
Manes.08G106700 Manihot esculenta
Manes.17G061600 Manihot esculenta
Manes.18G035000 Manihot esculenta
MBI05_g02402_MAGBIO Magnolia biondii
MBI05_g37667_MAGBIO Magnolia biondii
MBI07_g00479_MAGBIO Magnolia biondii
MBI08_g17984_MAGBIO Magnolia biondii
MBI18_g03857_MAGBIO Magnolia biondii
MBI18_g28914_MAGBIO Magnolia biondii
MD04G1184500 Malus domestica
MD05G1293900 Malus domestica
MD08G1040500 Malus domestica
MD10G1271800 Malus domestica
MD12G1197700 Malus domestica
MD13G1136700 Malus domestica
MD16G1132000 Malus domestica
Medtr1g085090 Medicago truncatula
Medtr2g017750 Medicago truncatula
Medtr3g065350 Medicago truncatula
Medtr3g100980 Medicago truncatula
Medtr4g123537 Medicago truncatula
Medtr7g111260 Medicago truncatula
Medtr8g087780 Medicago truncatula
Medtr8g087810 Medicago truncatula
MELO3C004144.2 Cucumis melo
MELO3C007185.2 Cucumis melo
MELO3C010902.2 Cucumis melo
Migut.B00892 Erythranthe guttata
Migut.M00990 Erythranthe guttata
Migut.N00979 Erythranthe guttata
Migut.N02688 Erythranthe guttata
Nitab4.5_0000068g0180 Nicotiana tabacum
Nitab4.5_0000081g0170 Nicotiana tabacum
Nitab4.5_0000541g0070 Nicotiana tabacum
Nitab4.5_0002303g0040 Nicotiana tabacum
Nitab4.5_0002507g0090 Nicotiana tabacum
Nitab4.5_0003511g0040 Nicotiana tabacum
Nitab4.5_0008935g0050 Nicotiana tabacum
Nitab4.5_0014978g0020 Nicotiana tabacum
Nn3g21990 Nelumbo nucifera
Oeu000179.1 Olea europaea
Oeu000183.1 Olea europaea
Oeu000184.1 Olea europaea
Oeu004271.1 Olea europaea
Oeu004272.1 Olea europaea
Oeu023383.1 Olea europaea
Oeu025681.1 Olea europaea
Oeu033222.1 Olea europaea
Oeu063617.1 Olea europaea
Os01g0748950 Oryza sativa ssp. japonica
Os04g0491500 Oryza sativa ssp. japonica
Os11g0282800 Oryza sativa ssp. japonica
Os11g0283500 Oryza sativa ssp. japonica
Os11g0284032 Oryza sativa ssp. japonica
Os11g0284300 Oryza sativa ssp. japonica
Os12g0231000 Oryza sativa ssp. japonica
Peaxi162Scf00035g00018 Petunia axillaris
Peaxi162Scf00126g01616 Petunia axillaris
Peaxi162Scf00194g00322 Petunia axillaris
Peaxi162Scf01055g00219 Petunia axillaris
PGR004G2420 Punica granatum
PGR042G3477 Punica granatum
PGR083G0273 Punica granatum
PGR083G0929 Punica granatum
PGSC0003DMG400004329 Solanum tuberosum
PGSC0003DMG400011691 Solanum tuberosum
PGSC0003DMG400011692 Solanum tuberosum
PGSC0003DMG400011693 Solanum tuberosum
PGSC0003DMG400018235 Solanum tuberosum
PGSC0003DMG400027817 Solanum tuberosum
PGSC0003DMG402021183 Solanum tuberosum
PGSC0003DMG403011681 Solanum tuberosum
Phvul.001G221300 Phaseolus vulgaris
Phvul.002G242900 Phaseolus vulgaris
Phvul.002G243000 Phaseolus vulgaris
Phvul.003G124800 Phaseolus vulgaris
Phvul.006G170100 Phaseolus vulgaris
Phvul.007G206400 Phaseolus vulgaris
Phvul.009G062200 Phaseolus vulgaris
Potri.001G272900 Populus trichocarpa
Potri.002G129500 Populus trichocarpa
Potri.004G064100 Populus trichocarpa
Potri.005G001400 Populus trichocarpa
Potri.014G036200 Populus trichocarpa
Prupe.1G208700 Prunus persica
Prupe.1G389100 Prunus persica
Prupe.4G070100 Prunus persica
Prupe.6G303000 Prunus persica
Psat0ss8606g0080 Pisum sativum
Psat1g193440 Pisum sativum
Psat4g020560 Pisum sativum
Psat5g045120 Pisum sativum
Psat6g156440 Pisum sativum
Psat7g067000 Pisum sativum
Psat7g067040 Pisum sativum
PSO017G0889 Papaver somniferum
PSO017G1649 Papaver somniferum
PSO017G7012 Papaver somniferum
PSO017G7133 Papaver somniferum
PSO210G2829 Papaver somniferum
PSO210G5890 Papaver somniferum
PSO528G0211 Papaver somniferum
PSO675G5987 Papaver somniferum
PSO675G7764 Papaver somniferum
PSO675G8417 Papaver somniferum
PSO761G0202 Papaver somniferum
PSO832G0899 Papaver somniferum
QL02p006275 Quercus lobata
QL03p011240 Quercus lobata
QL05p052099 Quercus lobata
QL05p052132 Quercus lobata
QL06p014817 Quercus lobata
RcHm_v2.0_Chr3g0458781 Rosa chinensis
RcHm_v2.0_Chr4g0428051 Rosa chinensis
RcHm_v2.0_Chr5g0012361 Rosa chinensis
RcHm_v2.0_Chr6g0299911 Rosa chinensis
Rhsim07G0156900 Rhododendron simsii
Rhsim07G0173300 Rhododendron simsii
Rhsim11G0106800 Rhododendron simsii
Sabra04G0042500 Salix brachista
Sabra14G0025900 Salix brachista
Sabra16G0168000 Salix brachista
SalBow4G1603 Salvia bowleyana
SalBow5G3929 Salvia bowleyana
SalBow6G2575 Salvia bowleyana
SalBow7G0498 Salvia bowleyana
SalBow7G2184 Salvia bowleyana
SalBow8G4698 Salvia bowleyana
Sed0006710 Sechium edule
Sed0020950 Sechium edule
Sed0025609 Sechium edule
SEGI_03055 Sequoiadendron giganteum
SEGI_09442 Sequoiadendron giganteum
SEGI_12715 Sequoiadendron giganteum
SEGI_14235 Sequoiadendron giganteum
SEGI_15461 Sequoiadendron giganteum
SEGI_15881 Sequoiadendron giganteum
SEGI_15999 Sequoiadendron giganteum
SEGI_19529 Sequoiadendron giganteum
SEGI_21513 Sequoiadendron giganteum
SEGI_26139 Sequoiadendron giganteum
SEGI_26424 Sequoiadendron giganteum
SEGI_26539 Sequoiadendron giganteum
SEGI_31209 Sequoiadendron giganteum
SEGI_35794 Sequoiadendron giganteum
SEGI_38569 Sequoiadendron giganteum
SEGI_40894 Sequoiadendron giganteum
SGA_v2.0_scaffold294G47484 Striga asiatica
SGA_v2.0_scaffold354G49731 Striga asiatica
SGA_v2.0_scaffold558G52915 Striga asiatica
SMO115G0214 Selaginella moellendorffii
SMO115G0224 Selaginella moellendorffii
SMO115G0271 Selaginella moellendorffii
SMO115G0277 Selaginella moellendorffii
SMO166G0081 Selaginella moellendorffii
Solyc01g102360.3 Solanum lycopersicum
Solyc04g079510.2 Solanum lycopersicum
Solyc04g079520.3 Solanum lycopersicum
Solyc04g079530.3 Solanum lycopersicum
Solyc10g039290.2 Solanum lycopersicum
Sopen01g044810 Solanum pennellii
Sopen04g033100 Solanum pennellii
Sopen04g033110 Solanum pennellii
Sopen10g012140 Solanum pennellii
TAR365G0254 Trochodendron aralioides
TAR365G0735 Trochodendron aralioides
TAR553G0001 Trochodendron aralioides
TAR623G0265 Trochodendron aralioides
TAR623G1599 Trochodendron aralioides
TAR627G0340 Trochodendron aralioides
TAR628G1320 Trochodendron aralioides
TAR633G0357 Trochodendron aralioides
Thecc.05G330800 Theobroma cacao
Thecc.06G161300 Theobroma cacao
Thecc.08G015500 Theobroma cacao
Thecc.08G015600 Theobroma cacao
Thecc.09G254100 Theobroma cacao
TPR.G12563 Trifolium pratense
TPR.G1664 Trifolium pratense
TPR.G26070 Trifolium pratense
TPR.G34903 Trifolium pratense
TPR.G4554 Trifolium pratense
TPR.G6734 Trifolium pratense
TPR.G6738 Trifolium pratense
TPR.G6814 Trifolium pratense
TWI12G1164 Tripterygium wilfordii
TWI36G0813 Tripterygium wilfordii
TWI36G1288 Tripterygium wilfordii
TWI39G0547 Tripterygium wilfordii
TWI56G0854 Tripterygium wilfordii
TWI56G1049 Tripterygium wilfordii
TWI73G1134 Tripterygium wilfordii
unitig_699.g19833 Utricularia gibba
unitig_747.g21286 Utricularia gibba
vmacro01661 Vaccinium macrocarpon
vmacro05188 Vaccinium macrocarpon
vmacro05189 Vaccinium macrocarpon
vmacro21578 Vaccinium macrocarpon
VMungo0251G0898 Vigna mungo
VMungo0251G1969 Vigna mungo
VMungo0251G2666 Vigna mungo
VMungo0540G1330 Vigna mungo
VMungo0720G0500 Vigna mungo
VMungo1215G2619 Vigna mungo
VMungo1309G0571 Vigna mungo
VMungo1383G0389 Vigna mungo
Zm00001eb078860 Zea mays
Zm00001eb090200 Zea mays
Zm00001eb133760 Zea mays
Zm00001eb153210 Zea mays

User provided reference genes

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