Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p15830 Brassica napus
A03p45950 Brassica napus
A03p55300 Brassica napus
A08p02630 Brassica napus
Aa31LG10G3170 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.1533 Anthoceros agrestis
Actinidia00643 Actinidia chinensis
Actinidia10272 Actinidia chinensis
Actinidia14240 Actinidia chinensis
Actinidia19248 Actinidia chinensis
Actinidia24348 Actinidia chinensis
Actinidia28027 Actinidia chinensis
Ah.01g002400 Amaranthus hybridus
Ah.01g007360 Amaranthus hybridus
Ah.01g023870 Amaranthus hybridus
AL1G59510 Arabidopsis lyrata
AL3G35170 Arabidopsis lyrata
AL7G28750 Arabidopsis lyrata
AL8G23580 Arabidopsis lyrata
Aqoxy5G01359 Aquilegia oxysepala
Aqoxy5G01361 Aquilegia oxysepala
Aqoxy6G00827 Aquilegia oxysepala
Aqoxy6G00828 Aquilegia oxysepala
Aqoxy7G02872 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0U49HS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.129W39 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.2L20XB Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.86LJVS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.EI5605 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.QG9XFC Arachis hypogaea
AT1G51600 Arabidopsis thaliana
AT3G21175 Arabidopsis thaliana
AT4G24470 Arabidopsis thaliana
ATR0580G443 Amborella trichopoda
ATR0767G104 Amborella trichopoda
Atru.chr1.2707 Acer truncatum
Atru.chr13.990 Acer truncatum
Atru.chr13.991 Acer truncatum
Atru.chr6.1297 Acer truncatum
AUR62001356 Chenopodium quinoa
AUR62014361 Chenopodium quinoa
AUR62014365 Chenopodium quinoa
AUR62019102 Chenopodium quinoa
AUR62019107 Chenopodium quinoa
AUR62025648 Chenopodium quinoa
AUR62027097 Chenopodium quinoa
AUR62030939 Chenopodium quinoa
BcaB04g17188 Brassica carinata
BcaB04g20608 Brassica carinata
BcaB06g26198 Brassica carinata
BcaC01g01283 Brassica carinata
BcaC05g28258 Brassica carinata
BcaC06g32883 Brassica carinata
BcaC08g43387 Brassica carinata
BcaC09g49053 Brassica carinata
BcaC09g50865 Brassica carinata
BcaNung05300 Brassica carinata
BcaNung05638 Brassica carinata
BolC1t01906H Brassica oleracea
BolC1t04256H Brassica oleracea
BolC3t21342H Brassica oleracea
BolC5t32984H Brassica oleracea
BraA01t01518Z Brassica rapa
BraA01t03195Z Brassica rapa
BraA01t03484Z Brassica rapa
BraA03t14589Z Brassica rapa
BraA05t21644Z Brassica rapa
BraA08t32302Z Brassica rapa
C01p19780 Brassica napus
C03p90200 Brassica napus
C06p07560 Brassica napus
C07p53600 Brassica napus
CAN.G1451.1 Capsicum annuum
CAN.G193.1 Capsicum annuum
CAN.G193.2 Capsicum annuum
CAN.G504.85 Capsicum annuum
CAN.G504.86 Capsicum annuum
CANSAT25G3666 Cannabis sativa
CANSAT54G0029 Cannabis sativa
CANSAT54G1915 Cannabis sativa
CARHR041750 Cardamine hirsuta
CARHR097040 Cardamine hirsuta
CARHR231860 Cardamine hirsuta
Carub.0001s4045 Capsella rubella
Carub.0003s2113 Capsella rubella
Carub.0007s1660 Capsella rubella
Ca_05458_v3 Cicer arietinum L.
Ca_16013_v3 Cicer arietinum L.
Ca_16014_v3 Cicer arietinum L.
Ca_18389_v3 Cicer arietinum L.
Ca_20499_v3 Cicer arietinum L.
CBR_g23534 Chara braunii
Cc02_g20800 Coffea canephora
Cc02_g20830 Coffea canephora
Cc04_g00300 Coffea canephora
Cc10_g08490 Coffea canephora
Cc10_g08500 Coffea canephora
CDE02G0103 Ceratophyllum demersum
CDE04G0898 Ceratophyllum demersum
CDE04G0957 Ceratophyllum demersum
CDE04G2497 Ceratophyllum demersum
CDE04G3608 Ceratophyllum demersum
CDE05G2050 Ceratophyllum demersum
CDE05G2549 Ceratophyllum demersum
CDE07G1579 Ceratophyllum demersum
Cfa004846 Carpinus fangiana
Cfa013810 Carpinus fangiana
Ciclev10001533m.g Citrus clementina
Ciclev10002056m.g Citrus clementina
Ciclev10027306m.g Citrus clementina
Ciclev10028671m.g Citrus clementina
CiPaw.05G028800 Carya illinoinensis
CiPaw.06G158400 Carya illinoinensis
CiPaw.06G158500 Carya illinoinensis
CiPaw.07G163700 Carya illinoinensis
CiPaw.07G163800 Carya illinoinensis
CiPaw.08G056800 Carya illinoinensis
CiPaw.08G056900 Carya illinoinensis
ClCG08G011590 Citrullus lanatus
ClCG08G011600 Citrullus lanatus
ClCG09G001590 Citrullus lanatus
ClCG09G016150 Citrullus lanatus
COL.COLO4_31187 Corchorus olitorius
COL.COLO4_32405 Corchorus olitorius
COL.COLO4_32406 Corchorus olitorius
COL.COLO4_35267 Corchorus olitorius
COL.COLO4_35268 Corchorus olitorius
COL.COLO4_35269 Corchorus olitorius
Cpa.g.c35126 Carica papaya
Cpa.g.c46357 Carica papaya
Cpa.g.sc155.28 Carica papaya
Cpa.g.sc20.16 Carica papaya
Cpa.g.sc20.19 Carica papaya
Cpa.g.sc21.35 Carica papaya
Cpa.g.sc3189.1 Carica papaya
Cpa.g.sc3189.2 Carica papaya
CsaV3_2G030170 Cucumis sativus L.
CsaV3_2G030180 Cucumis sativus L.
CsaV3_7G006810 Cucumis sativus L.
CsaV3_7G033740 Cucumis sativus L.
CSS0003047 Camellia sinensis var. sinensis
CSS0004261 Camellia sinensis var. sinensis
CSS0008522 Camellia sinensis var. sinensis
CSS0016802 Camellia sinensis var. sinensis
CSS0017184 Camellia sinensis var. sinensis
CSS0017505 Camellia sinensis var. sinensis
CSS0036245 Camellia sinensis var. sinensis
CSS0037100 Camellia sinensis var. sinensis
CSS0038606 Camellia sinensis var. sinensis
CSS0041324 Camellia sinensis var. sinensis
CSS0043097 Camellia sinensis var. sinensis
CSS0045061 Camellia sinensis var. sinensis
CSS0045977 Camellia sinensis var. sinensis
CSS0050427 Camellia sinensis var. sinensis
CSS0050449 Camellia sinensis var. sinensis
DCAR_009553 Daucus carota
DCAR_021905 Daucus carota
Dinv16008 Davidia involucrata
Dinv20348 Davidia involucrata
Dinv24143 Davidia involucrata
Dinv42599 Davidia involucrata
Dinv42600 Davidia involucrata
Dinv44870 Davidia involucrata
Dinv44872 Davidia involucrata
Duzib041G0009 Durio zibethinus
Duzib041G0579 Durio zibethinus
Duzib052G0514 Durio zibethinus
Duzib093G0806 Durio zibethinus
Duzib093G1577 Durio zibethinus
Duzib116G0581 Durio zibethinus
Duzib116G0651 Durio zibethinus
Duzib132G1132 Durio zibethinus
Duzib248G0346 Durio zibethinus
Duzib248G1459 Durio zibethinus
ECA234G3978 Erigeron canadensis
ECA236G4190 Erigeron canadensis
EL10Ac1g00493 Beta vulgaris
EL10Ac1g00497 Beta vulgaris
EL10Ac7g18179 Beta vulgaris
EL10Ac9g22059 Beta vulgaris
Eucgr.F00433 Eucalyptus grandis
Eucgr.F02157 Eucalyptus grandis
Eucgr.J03166 Eucalyptus grandis
Eucgr.L00751 Eucalyptus grandis
Eucgr.L00755 Eucalyptus grandis
FAN04G1280 Fragaria x ananassa
FAN04G2961 Fragaria x ananassa
FAN08G1999 Fragaria x ananassa
FAN13G2176 Fragaria x ananassa
FAN13G3168 Fragaria x ananassa
FAN15G0512 Fragaria x ananassa
FAN18G0814 Fragaria x ananassa
FAN24G2842 Fragaria x ananassa
FAN27G3477 Fragaria x ananassa
FvH4_2g11520 Fragaria vesca
FvH4_5g34490 Fragaria vesca
FvH4_5g34500 Fragaria vesca
Glyma.02G215600 Glycine max
Glyma.04G096200 Glycine max
Glyma.04G096300 Glycine max
Glyma.06G097900 Glycine max
Glyma.06G098000 Glycine max
Glyma.07G182700 Glycine max
Glyma.08G067200 Glycine max
Glyma.08G221800 Glycine max
Glyma.14G182800 Glycine max
Gohir.A01G126000 Gossypium hirsutum
Gohir.A02G078901 Gossypium hirsutum
Gohir.A03G177600 Gossypium hirsutum
Gohir.A05G264500 Gossypium hirsutum
Gohir.A06G031200 Gossypium hirsutum
Gohir.A06G031300 Gossypium hirsutum
Gohir.A12G016900 Gossypium hirsutum
Gohir.A13G050400 Gossypium hirsutum
Gohir.D01G113500 Gossypium hirsutum
Gohir.D02G086250 Gossypium hirsutum
Gohir.D02G201300 Gossypium hirsutum
Gohir.D05G267000 Gossypium hirsutum
Gohir.D06G030400 Gossypium hirsutum
Gohir.D06G030500 Gossypium hirsutum
Gohir.D12G017600 Gossypium hirsutum
Gohir.D13G049200 Gossypium hirsutum
Gorai.002G138300 Gossypium raimondii
Gorai.005G097100 Gossypium raimondii
Gorai.005G226000 Gossypium raimondii
Gorai.008G017800 Gossypium raimondii
Gorai.009G279200 Gossypium raimondii
Gorai.010G033400 Gossypium raimondii
Gorai.010G033500 Gossypium raimondii
Gorai.013G055000 Gossypium raimondii
GSVIVG01009197001 Vitis vinifera
GSVIVG01009198001 Vitis vinifera
GSVIVG01012518001 Vitis vinifera
GSVIVG01012522001 Vitis vinifera
GSVIVG01012523001 Vitis vinifera
GSVIVG01029593001 Vitis vinifera
HanXRQChr10g0297751 Helianthus annuus
HanXRQChr15g0497461 Helianthus annuus
HanXRQChr16g0514521 Helianthus annuus
Haze_10500 Corylus avellana
Haze_10501 Corylus avellana
Haze_22478 Corylus avellana
Haze_22480 Corylus avellana
Hma1.2p1_0010F.1_g006570 Hydrangea macrophylla
Hma1.2p1_0010F.1_g006580 Hydrangea macrophylla
Hma1.2p1_0435F.1_g152720 Hydrangea macrophylla
Hma1.2p1_0517F.1_g170680 Hydrangea macrophylla
Hma1.2p1_0908F.1_g235510 Hydrangea macrophylla
Hma1.2p1_1093F.1_g256320 Hydrangea macrophylla
HPP92_010292 Vanilla planifolia
HPP92_020626 Vanilla planifolia
HPP92_021238 Vanilla planifolia
Hund00386 Selenicereus undatus
Hund05681 Selenicereus undatus
Hund06470 Selenicereus undatus
Hund17274 Selenicereus undatus
Hund26820 Selenicereus undatus
Lalb_Chr09g0326931 Lupinus albus
Lalb_Chr10g0102761 Lupinus albus
Lalb_Chr11g0064891 Lupinus albus
Lalb_Chr17g0344611 Lupinus albus
Lalb_Chr23g0269981 Lupinus albus
Lalb_Chr23g0269991 Lupinus albus
Lj1g0021415 Lotus japonicus
Lj1g0022560 Lotus japonicus
Lj3g0019156 Lotus japonicus
Lj4A740T29 Lonicera japonica
Lj4C86T29 Lonicera japonica
Lj4g0011547 Lotus japonicus
Lj5A229G58 Lonicera japonica
Lj9A347T53 Lonicera japonica
LjContig00408g0000649 Lotus japonicus
Lsat_1_v5_gn_1_122401 Lactuca sativa
Lsat_1_v5_gn_3_131641 Lactuca sativa
Lsat_1_v5_gn_4_88520 Lactuca sativa
Lsat_1_v5_gn_5_110200 Lactuca sativa
Lsat_1_v5_gn_7_83621 Lactuca sativa
Lsat_1_v5_gn_9_79080 Lactuca sativa
Manes.05G189500 Manihot esculenta
Manes.05G189600 Manihot esculenta
Manes.07G041200 Manihot esculenta
Manes.07G041300 Manihot esculenta
Manes.10G097400 Manihot esculenta
Manes.18G056300 Manihot esculenta
Manes.18G056400 Manihot esculenta
Mapoly0017s0009 Marchantia polymorpha
MapolyY_B0021 Marchantia polymorpha
MBI14_g10717_MAGBIO Magnolia biondii
MBI14_g10718_MAGBIO Magnolia biondii
MBI16_g06018_MAGBIO Magnolia biondii
MBI16_g28191_MAGBIO Magnolia biondii
MBI16_g30320_MAGBIO Magnolia biondii
MBI16_g42993_MAGBIO Magnolia biondii
MBI16_g45372_MAGBIO Magnolia biondii
MCO16G415 Micromonas commoda
MD05G1048600 Malus domestica
MD08G1200800 Malus domestica
MD08G1200900 Malus domestica
MD09G1160800 Malus domestica
MD10G1055000 Malus domestica
MD15G1387700 Malus domestica
MD15G1387800 Malus domestica
Medtr1g061610 Medicago truncatula
Medtr3g060200 Medicago truncatula
Medtr3g100040 Medicago truncatula
Medtr3g100050 Medicago truncatula
Medtr4g008070 Medicago truncatula
Medtr4g008090 Medicago truncatula
Medtr4g093730 Medicago truncatula
Medtr5g066510 Medicago truncatula
MELO3C011078.2 Cucumis melo
MELO3C011079.2 Cucumis melo
MELO3C018614.2 Cucumis melo
MELO3C024287.2 Cucumis melo
Migut.B00065 Erythranthe guttata
Migut.B00543 Erythranthe guttata
Migut.I01184 Erythranthe guttata
Migut.N01100 Erythranthe guttata
MSTRG.10887 Avicennia marina
MSTRG.20276 Avicennia marina
MSTRG.22506 Avicennia marina
MSTRG.5288 Avicennia marina
MSTRG.9555 Avicennia marina
Nitab4.5_0000131g0070 Nicotiana tabacum
Nitab4.5_0001259g0110 Nicotiana tabacum
Nitab4.5_0001636g0090 Nicotiana tabacum
Nitab4.5_0001636g0100 Nicotiana tabacum
Nitab4.5_0001773g0050 Nicotiana tabacum
Nitab4.5_0005273g0020 Nicotiana tabacum
Nitab4.5_0005345g0010 Nicotiana tabacum
Nitab4.5_0005345g0020 Nicotiana tabacum
Nn1g05618 Nelumbo nucifera
Nn1g05619 Nelumbo nucifera
Nn5g29834 Nelumbo nucifera
Nn5g29835 Nelumbo nucifera
Nn8g40697 Nelumbo nucifera
Oeu010522.1 Olea europaea
Oeu014200.1 Olea europaea
Oeu023759.3 Olea europaea
Oeu028593.3 Olea europaea
Oeu029682.2 Olea europaea
Oeu049644.1 Olea europaea
Oeu054774.2 Olea europaea
Oeu063546.2 Olea europaea
Os02g0148500 Oryza sativa ssp. japonica
Os03g0684000 Oryza sativa ssp. japonica
Os03g0734900 Oryza sativa ssp. japonica
Os06g0698900 Oryza sativa ssp. japonica
Peaxi162Scf00003g03239 Petunia axillaris
Peaxi162Scf00299g00543 Petunia axillaris
Peaxi162Scf00299g00545 Petunia axillaris
Peaxi162Scf00454g00012 Petunia axillaris
PGR031G1342 Punica granatum
PGR031G2713 Punica granatum
PGR042G0014 Punica granatum
PGR042G3046 Punica granatum
PGSC0003DMG400010684 Solanum tuberosum
PGSC0003DMG400033576 Solanum tuberosum
Phvul.002G213800 Phaseolus vulgaris
Phvul.008G182900 Phaseolus vulgaris
Phvul.008G254600 Phaseolus vulgaris
Phvul.009G035300 Phaseolus vulgaris
Phvul.009G035400 Phaseolus vulgaris
Phvul.009G118600 Phaseolus vulgaris
Potri.002G110800 Populus trichocarpa
Potri.002G110900 Populus trichocarpa
Potri.005G152500 Populus trichocarpa
Potri.005G152800 Populus trichocarpa
Potri.007G116550 Populus trichocarpa
Potri.007G116700 Populus trichocarpa
Potri.010G251600 Populus trichocarpa
Potri.017G042200 Populus trichocarpa
Potri.017G042300 Populus trichocarpa
Pp3c14_24090 Physcomitrium patens
Pp3c17_23200 Physcomitrium patens
Pp3c1_40750 Physcomitrium patens
Pp3c2_590 Physcomitrium patens
Prupe.1G534300 Prunus persica
Prupe.1G534400 Prunus persica
Prupe.3G019800 Prunus persica
Prupe.8G071200 Prunus persica
Prupe.8G071300 Prunus persica
Psat5g047080 Pisum sativum
Psat7g101680 Pisum sativum
Psat7g260880 Pisum sativum
PSO063G4369 Papaver somniferum
PSO170G0998 Papaver somniferum
PSO170G2331 Papaver somniferum
PSO170G4355 Papaver somniferum
PSO210G3194 Papaver somniferum
PSO210G6610 Papaver somniferum
PSO541G0685 Papaver somniferum
PSO541G4387 Papaver somniferum
PSO541G6048 Papaver somniferum
PSO675G4239 Papaver somniferum
PSO675G6509 Papaver somniferum
PSO781G0297 Papaver somniferum
QL05p083786 Quercus lobata
QL08p016686 Quercus lobata
QL09p018123 Quercus lobata
QL09p018196 Quercus lobata
QL11p025478 Quercus lobata
QL11p025524 Quercus lobata
RcHm_v2.0_Chr6g0270541 Rosa chinensis
RcHm_v2.0_Chr7g0235131 Rosa chinensis
RcHm_v2.0_Chr7g0235141 Rosa chinensis
Rhsim05G0101600 Rhododendron simsii
Rhsim06G0070700 Rhododendron simsii
Rhsim07G0212800 Rhododendron simsii
Rhsim08G0248900 Rhododendron simsii
Rhsim11G0141800 Rhododendron simsii
Sabra02G0087300 Salix brachista
Sabra02G0087400 Salix brachista
Sabra05G0119700 Salix brachista
Sabra07G0094800 Salix brachista
Sabra07G0094900 Salix brachista
Sabra10G0195700 Salix brachista
Sabra17G0028800 Salix brachista
SalBow1G8039 Salvia bowleyana
SalBow6G0692 Salvia bowleyana
SalBow6G3034 Salvia bowleyana
SalBow6G4583 Salvia bowleyana
Sc08g0003980 Simmondsia chinensis
Sc12g0011090 Simmondsia chinensis
Sc15g0000970 Simmondsia chinensis
Sc15g0003360 Simmondsia chinensis
Sed0001654 Sechium edule
Sed0006585 Sechium edule
Sed0013011 Sechium edule
Sed0017018 Sechium edule
Sed0020760 Sechium edule
Sed0020905 Sechium edule
Sed0022209 Sechium edule
Sed0027362 Sechium edule
SEGI_05350 Sequoiadendron giganteum
SEGI_38252 Sequoiadendron giganteum
SGA_v2.0_scaffold32G12932 Striga asiatica
SGA_v2.0_scaffold32G13293 Striga asiatica
SGA_v2.0_scaffold71G24002 Striga asiatica
SGA_v2.0_scaffold83G26382 Striga asiatica
SMO118G0037 Selaginella moellendorffii
SMO165G0021 Selaginella moellendorffii
Solyc01g106030.4 Solanum lycopersicum
Solyc01g106040.3 Solanum lycopersicum
Solyc04g076530.3 Solanum lycopersicum
Solyc10g047640.3 Solanum lycopersicum
Sopen01g048410 Solanum pennellii
Sopen01g048420 Solanum pennellii
Sopen04g030260 Solanum pennellii
Sopen10g018050 Solanum pennellii
Sp1g38240 Schrenkiella parvula
Sp3g19150 Schrenkiella parvula
Sp7g22450 Schrenkiella parvula
TAR376G1122 Trochodendron aralioides
TAR381G0833 Trochodendron aralioides
TAR383G0438 Trochodendron aralioides
TAR625G0059 Trochodendron aralioides
TAR625G0997 Trochodendron aralioides
TAR628G0070 Trochodendron aralioides
TAR628G0927 Trochodendron aralioides
THA.LOC104799857 Tarenaya hassleriana
THA.LOC104799858 Tarenaya hassleriana
THA.LOC104810682 Tarenaya hassleriana
THA.LOC104816895 Tarenaya hassleriana
THA.LOC104817923 Tarenaya hassleriana
THA.LOC104821599 Tarenaya hassleriana
Thecc.02G128000 Theobroma cacao
Thecc.02G128100 Theobroma cacao
Thecc.06G060500 Theobroma cacao
Thecc.08G072900 Theobroma cacao
Thecc.08G073000 Theobroma cacao
Thhalv10011695m.g Eutrema salsugineum
Thhalv10020970m.g Eutrema salsugineum
Thhalv10025795m.g Eutrema salsugineum
TPR.G2843 Trifolium pratense
TPR.G30871 Trifolium pratense
TWI12G0077 Tripterygium wilfordii
TWI14G0185 Tripterygium wilfordii
TWI36G0049 Tripterygium wilfordii
TWI56G0092 Tripterygium wilfordii
TWI56G0928 Tripterygium wilfordii
unitig_32.g11556 Utricularia gibba
unitig_748.g7474 Utricularia gibba
vmacro01867 Vaccinium macrocarpon
vmacro04642 Vaccinium macrocarpon
vmacro04643 Vaccinium macrocarpon
vmacro18754 Vaccinium macrocarpon
vmacro19962 Vaccinium macrocarpon
vmacro21348 Vaccinium macrocarpon
vmacro23396 Vaccinium macrocarpon
VMungo0251G0209 Vigna mungo
VMungo0647G0047 Vigna mungo
VMungo0647G1231 Vigna mungo
VMungo1309G0338 Vigna mungo
VMungo1309G0871 Vigna mungo
VMungo1309G1492 Vigna mungo
Zm00001eb053170 Zea mays
Zm00001eb215440 Zea mays
Zm00001eb226740 Zea mays
Zm00001eb273020 Zea mays

User provided reference genes

Program Settings