Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A01p23480 Brassica napus
A09p44490 Brassica napus
Aa31LG1G14530 Aethionema arabicum
Actinidia02363 Actinidia chinensis
Actinidia17393 Actinidia chinensis
Actinidia22928 Actinidia chinensis
Ah.02g129060 Amaranthus hybridus
Ah.03g134170 Amaranthus hybridus
AL5G31840 Arabidopsis lyrata
Aqoxy6G01836 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.106C79 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.5JBS04 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.65IKEQ Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.R6TSSQ Arachis hypogaea
AT3G51390 Arabidopsis thaliana
ATR0661G230 Amborella trichopoda
Atru.chr3.934 Acer truncatum
AUR62026202 Chenopodium quinoa
AUR62026391 Chenopodium quinoa
BcaB01g00520 Brassica carinata
BcaC09g50093 Brassica carinata
BcaNung00388 Brassica carinata
BcaNung05551 Brassica carinata
BolC1t02844H Brassica oleracea
BolC8t50281H Brassica oleracea
BraA01t02255Z Brassica rapa
BraA09t39907Z Brassica rapa
C01p29130 Brassica napus
C08p26670 Brassica napus
CAN.G23.17 Capsicum annuum
CAN.G890.9 Capsicum annuum
CARHR160990 Cardamine hirsuta
Carub.0005s1777 Capsella rubella
Ca_24954_v3 Cicer arietinum L.
Cc07_g11490 Coffea canephora
CDE02G4661 Ceratophyllum demersum
Cfa007045 Carpinus fangiana
Ciclev10025980m.g Citrus clementina
CiPaw.07G005200 Carya illinoinensis
CiPaw.08G179800 Carya illinoinensis
ClCG01G020710 Citrullus lanatus
COL.COLO4_22515 Corchorus olitorius
Cpa.g.sc6.335 Carica papaya
Cre03.g182400 Chlamydomonas reinhardtii
CsaV3_6G047640 Cucumis sativus L.
CSS0027377 Camellia sinensis var. sinensis
CSS0034111 Camellia sinensis var. sinensis
CSS0049695 Camellia sinensis var. sinensis
DCAR_011587 Daucus carota
Dinv08539 Davidia involucrata
Dinv40159 Davidia involucrata
Duzib147G0009 Durio zibethinus
EL10Ac6g13347 Beta vulgaris
Eucgr.I02283 Eucalyptus grandis
Eucgr.J02517 Eucalyptus grandis
FAN02G4027 Fragaria x ananassa
FAN05G4181 Fragaria x ananassa
FAN09G1010 Fragaria x ananassa
FAN09G3278 Fragaria x ananassa
FAN14G2747 Fragaria x ananassa
FAN19G0005 Fragaria x ananassa
FAN23G2490 Fragaria x ananassa
FAN26G1367 Fragaria x ananassa
FAN26G3296 Fragaria x ananassa
FAN28G1575 Fragaria x ananassa
FvH4_1g10780 Fragaria vesca
FvH4_6g14950 Fragaria vesca
FvH4_6g25790 Fragaria vesca
Glyma.11G082600 Glycine max
Gohir.A02G175700 Gossypium hirsutum
Gohir.A11G171000 Gossypium hirsutum
Gohir.D03G004200 Gossypium hirsutum
Gohir.D11G178000 Gossypium hirsutum
Gorai.003G004400 Gossypium raimondii
Gorai.007G189900 Gossypium raimondii
HanXRQChr09g0256961 Helianthus annuus
HanXRQChr15g0487491 Helianthus annuus
Haze_03684 Corylus avellana
Hma1.2p1_0315F.1_g122750 Hydrangea macrophylla
HPP92_022390 Vanilla planifolia
Hund03662 Selenicereus undatus
Lalb_Chr05g0212061 Lupinus albus
Lj2g0016931 Lotus japonicus
Lj4A228G17 Lonicera japonica
Lsat_1_v5_gn_2_75001 Lactuca sativa
Lsat_1_v5_gn_4_143501 Lactuca sativa
Manes.03G080400 Manihot esculenta
Mapoly0218s0003 Marchantia polymorpha
MBI05_g39718_MAGBIO Magnolia biondii
MBI08_g09580_MAGBIO Magnolia biondii
MBI08_g35872_MAGBIO Magnolia biondii
MD02G1121800 Malus domestica
MD15G1235400 Malus domestica
Medtr5g023230 Medicago truncatula
MELO3C007955.2 Cucumis melo
Migut.H02192 Erythranthe guttata
MSTRG.2739 Avicennia marina
Nitab4.5_0000188g0270 Nicotiana tabacum
Nitab4.5_0001310g0100 Nicotiana tabacum
Nitab4.5_0001310g0110 Nicotiana tabacum
Nitab4.5_0004994g0030 Nicotiana tabacum
Nitab4.5_0005413g0010 Nicotiana tabacum
Nn5g30900 Nelumbo nucifera
Nn6g31831 Nelumbo nucifera
Oeu012549.1 Olea europaea
Oeu039717.1 Olea europaea
Os04g0562000 Oryza sativa ssp. japonica
Os12g0480000 Oryza sativa ssp. japonica
Peaxi162Scf00300g00517 Petunia axillaris
Peaxi162Scf00439g00007 Petunia axillaris
PGR102G0214 Punica granatum
PGR119G0893 Punica granatum
PGSC0003DMG400001577 Solanum tuberosum
PGSC0003DMG402008678 Solanum tuberosum
PGSC0003DMG403008678 Solanum tuberosum
Phvul.002G112900 Phaseolus vulgaris
Potri.005G104700 Populus trichocarpa
Potri.005G104800 Populus trichocarpa
Potri.007G060100 Populus trichocarpa
Pp3c11_17220 Physcomitrium patens
Pp3c1_15780 Physcomitrium patens
Pp3c2_20610 Physcomitrium patens
PRCOL_00005340 Prasinoderma coloniale
Prupe.7G177700 Prunus persica
Psat2g151080 Pisum sativum
PSO063G3446 Papaver somniferum
PSO541G2607 Papaver somniferum
PSO675G0891 Papaver somniferum
QL06p052479 Quercus lobata
QL06p052483 Quercus lobata
QL10p037295 Quercus lobata
RcHm_v2.0_Chr2g0097961 Rosa chinensis
RcHm_v2.0_Chr3g0494861 Rosa chinensis
Rhsim08G0028900 Rhododendron simsii
Sabra05G0086000 Salix brachista
Sabra07G0050700 Salix brachista
Sabra07G0050800 Salix brachista
SalBow3G0047 Salvia bowleyana
Sc03g0003810 Simmondsia chinensis
Sed0027006 Sechium edule
SEGI_01463 Sequoiadendron giganteum
SEGI_05177 Sequoiadendron giganteum
SEGI_40282 Sequoiadendron giganteum
SGA_v2.0_scaffold108G30985 Striga asiatica
SGA_v2.0_scaffold2G00960 Striga asiatica
SHI49197 Sapria himalayana
SMO347G0399 Selaginella moellendorffii
Solyc02g061810.3 Solanum lycopersicum
Solyc02g083150.3 Solanum lycopersicum
Sopen02g012850 Solanum pennellii
Sopen02g027910 Solanum pennellii
Sp5g10830 Schrenkiella parvula
TAR376G1081 Trochodendron aralioides
THA.LOC104821351 Tarenaya hassleriana
Thecc.01G009500 Theobroma cacao
Thhalv10010516m.g Eutrema salsugineum
TPR.G25124 Trifolium pratense
TWI53G1416 Tripterygium wilfordii
TWI73G1167 Tripterygium wilfordii
unitig_27.g25346 Utricularia gibba
unitig_699.g19572 Utricularia gibba
vmacro18446 Vaccinium macrocarpon
VMungo1215G1979 Vigna mungo
Zm00001eb187020 Zea mays
Zm00001eb250140 Zea mays

User provided reference genes

Program Settings