Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A07p25530 Brassica napus
A09p53530 Brassica napus
Aa31LG1G27480 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_344.3195 Anthoceros agrestis
AagrBONN_evm.TU.Sc2ySwM_344.3204 Anthoceros agrestis
Actinidia10047 Actinidia chinensis
Actinidia20884 Actinidia chinensis
Ah.05g180350 Amaranthus hybridus
AL5G43780 Arabidopsis lyrata
AL5G43840 Arabidopsis lyrata
Aqoxy5G04078 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.0F1BT2 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.553FBT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ABA0S6 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.K3XHZI Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.RG0L3L Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.WWIQ7K Arachis hypogaea
AT3G61480 Arabidopsis thaliana
AT5G28350 Arabidopsis thaliana
AT5G28442 Arabidopsis thaliana
ATR0661G292 Amborella trichopoda
Atru.chr5.535 Acer truncatum
AUR62004390 Chenopodium quinoa
AUR62004391 Chenopodium quinoa
AUR62022597 Chenopodium quinoa
BcaC07g40648 Brassica carinata
BcaC07g42689 Brassica carinata
BolC6t37919H Brassica oleracea
BolC8t51219H Brassica oleracea
BraA09t40777Z Brassica rapa
C06p27520 Brassica napus
C08p36360 Brassica napus
CAN.G78.102 Capsicum annuum
CANSAT56G3337 Cannabis sativa
CARHR057240 Cardamine hirsuta
CARHR171820 Cardamine hirsuta
Carub.0005s2817 Capsella rubella
CBR_g36279 Chara braunii
Cc02_g24300 Coffea canephora
Cc02_g38370 Coffea canephora
CDE04G2307 Ceratophyllum demersum
CDE04G3641 Ceratophyllum demersum
Cfa003893 Carpinus fangiana
Cfa026409 Carpinus fangiana
Ciclev10018597m.g Citrus clementina
CiPaw.01G064500 Carya illinoinensis
CiPaw.02G033500 Carya illinoinensis
ClCG06G003500 Citrullus lanatus
COL.COLO4_12743 Corchorus olitorius
COL.COLO4_12744 Corchorus olitorius
Cpa.g.sc11.37 Carica papaya
Cpa.g.sc11.39 Carica papaya
Cre12.g506650 Chlamydomonas reinhardtii
CsaV3_6G000810 Cucumis sativus L.
CSS0008006 Camellia sinensis var. sinensis
CSS0014634 Camellia sinensis var. sinensis
CSS0021987 Camellia sinensis var. sinensis
CSS0028965 Camellia sinensis var. sinensis
CSS0029755 Camellia sinensis var. sinensis
CSS0030491 Camellia sinensis var. sinensis
DCAR_006941 Daucus carota
Dinv32504 Davidia involucrata
Dinv43843 Davidia involucrata
Duzib133G0964 Durio zibethinus
Duzib138G1153 Durio zibethinus
ECA236G0245 Erigeron canadensis
EL10Ac1g00379 Beta vulgaris
Eucgr.E00109 Eucalyptus grandis
FAN08G3284 Fragaria x ananassa
FAN13G2415 Fragaria x ananassa
FAN18G0188 Fragaria x ananassa
FvH4_5g28900 Fragaria vesca
Glyma.09G256700 Glycine max
Glyma.18G235800 Glycine max
Gohir.A07G141200 Gossypium hirsutum
Gohir.D07G146700 Gossypium hirsutum
Gorai.001G159200 Gossypium raimondii
GSVIVG01026995001 Vitis vinifera
HanXRQChr04g0121341 Helianthus annuus
Haze_15540 Corylus avellana
Hma1.2p1_0071F.1_g037770 Hydrangea macrophylla
Hma1.2p1_0071F.1_g037780 Hydrangea macrophylla
Hma1.2p1_0733F.1_g210090 Hydrangea macrophylla
HPP92_012670 Vanilla planifolia
HPP92_012694 Vanilla planifolia
HPP92_012695 Vanilla planifolia
Hund27256 Selenicereus undatus
Lalb_Chr03g0038271 Lupinus albus
Lj1g0026001 Lotus japonicus
Lj9C586G6 Lonicera japonica
Lsat_1_v5_gn_4_49241 Lactuca sativa
Lsat_1_v5_gn_7_3220 Lactuca sativa
Lsat_1_v5_gn_9_9281 Lactuca sativa
Manes.01G254400 Manihot esculenta
Mapoly0027s0035 Marchantia polymorpha
MCO14G315 Micromonas commoda
MD01G1067900 Malus domestica
MD01G1068000 Malus domestica
MD11G1239400 Malus domestica
MD11G1239500 Malus domestica
Medtr7g078170 Medicago truncatula
MELO3C021189.2 Cucumis melo
Migut.B01779 Erythranthe guttata
MSTRG.17286 Avicennia marina
Nitab4.5_0000583g0330 Nicotiana tabacum
Nitab4.5_0006942g0020 Nicotiana tabacum
Nn1g01614 Nelumbo nucifera
Nn6g33322 Nelumbo nucifera
Oeu036598.1 Olea europaea
Oeu039184.1 Olea europaea
Os02g0786000 Oryza sativa ssp. japonica
Peaxi162Scf00020g01027 Petunia axillaris
Peaxi162Scf41243g00005 Petunia axillaris
PGR042G3632 Punica granatum
Phvul.008G060200 Phaseolus vulgaris
Potri.002G162000 Populus trichocarpa
Potri.014G087900 Populus trichocarpa
Pp3c14_21590 Physcomitrium patens
Pp3c2_4880 Physcomitrium patens
PRCOL_00000293 Prasinoderma coloniale
Prupe.2G174200 Prunus persica
Psat0ss4650g0200 Pisum sativum
Psat3g107280 Pisum sativum
Psat7g148560 Pisum sativum
PSO063G5582 Papaver somniferum
QL04p054287 Quercus lobata
RcHm_v2.0_Chr1g0356891 Rosa chinensis
RcHm_v2.0_Chr1g0356901 Rosa chinensis
RcHm_v2.0_Chr1g0356911 Rosa chinensis
RcHm_v2.0_Chr1g0356921 Rosa chinensis
RcHm_v2.0_Chr1g0356931 Rosa chinensis
RcHm_v2.0_Chr7g0221211 Rosa chinensis
Rhsim07G0012700 Rhododendron simsii
Rhsim12G0103300 Rhododendron simsii
Sabra02G0129100 Salix brachista
Sabra14G0063700 Salix brachista
SalBow3G3037 Salvia bowleyana
Sc23g0002720 Simmondsia chinensis
Sc23g0002730 Simmondsia chinensis
Sed0013986 Sechium edule
Sed0025112 Sechium edule
SEGI_01640 Sequoiadendron giganteum
SEGI_29424 Sequoiadendron giganteum
SEGI_34049 Sequoiadendron giganteum
SEGI_39496 Sequoiadendron giganteum
SGA_v2.0_scaffold78G25411 Striga asiatica
SHI13402 Sapria himalayana
SMO367G0176 Selaginella moellendorffii
Solyc01g094880.3 Solanum lycopersicum
Sopen01g038660 Solanum pennellii
Sp5g01920 Schrenkiella parvula
TAR629G2795 Trochodendron aralioides
TAR629G3312 Trochodendron aralioides
TAR636G0349 Trochodendron aralioides
THA.LOC104817308 Tarenaya hassleriana
Thecc.01G355600 Theobroma cacao
Thhalv10005756m.g Eutrema salsugineum
TPR.G37786 Trifolium pratense
TWI59G0377 Tripterygium wilfordii
unitig_749.g14347 Utricularia gibba
vmacro13256 Vaccinium macrocarpon
vmacro23481 Vaccinium macrocarpon
VMungo0464G0057 Vigna mungo
VMungo1383G1290 Vigna mungo
Zm00001eb192800 Zea mays
Zm00001eb257250 Zea mays

User provided reference genes

Program Settings