Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p01220 Brassica napus
Aa31LG10G15280 Aethionema arabicum
Actinidia33434 Actinidia chinensis
Ah.02g122980 Amaranthus hybridus
AL5G43470 Arabidopsis lyrata
Aqoxy7G00392 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.67TC14 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BEZL7V Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.LBI1HC Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.MUI9WD Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.NCU55Y Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.UY84ZS Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.VZ643L Arachis hypogaea
AT3G61200 Arabidopsis thaliana
ATR0757G134 Amborella trichopoda
Atru.chr5.428 Acer truncatum
Atru.chr5.429 Acer truncatum
Atru.chr5.430 Acer truncatum
Atru.chr5.432 Acer truncatum
AUR62004306 Chenopodium quinoa
AUR62022756 Chenopodium quinoa
AUR62022757 Chenopodium quinoa
BcaC02g10211 Brassica carinata
BolC4t24695H Brassica oleracea
BraA04t15840Z Brassica rapa
C04p31500 Brassica napus
CAN.G170.13 Capsicum annuum
CANSAT56G2307 Cannabis sativa
CARHR171510 Cardamine hirsuta
Carub.0005s2787 Capsella rubella
Ca_07852_v3 Cicer arietinum L.
Ca_25783_v3 Cicer arietinum L.
Cc00_g12140 Coffea canephora
CDE07G1632 Ceratophyllum demersum
Cfa004205 Carpinus fangiana
Cfa004206 Carpinus fangiana
Cfa004207 Carpinus fangiana
Ciclev10022587m.g Citrus clementina
CiPaw.02G026900 Carya illinoinensis
CiPaw.02G027200 Carya illinoinensis
ClCG05G001750 Citrullus lanatus
COL.COLO4_12605 Corchorus olitorius
Cpa.g.sc18.209 Carica papaya
Cpa.g.sc18.210 Carica papaya
CsaV3_3G009140 Cucumis sativus L.
CSS0035798 Camellia sinensis var. sinensis
DCAR_020430 Daucus carota
DCAR_025147 Daucus carota
Dinv32437 Davidia involucrata
Dinv32438 Davidia involucrata
Duzib133G0425 Durio zibethinus
ECA236G1648 Erigeron canadensis
ECA236G4160 Erigeron canadensis
EL10Ac1g00516 Beta vulgaris
EL10Ac1g00517 Beta vulgaris
Eucgr.E00193 Eucalyptus grandis
FAN01G0068 Fragaria x ananassa
FAN01G1053 Fragaria x ananassa
FAN03G2927 Fragaria x ananassa
FAN06G0832 Fragaria x ananassa
FAN06G3956 Fragaria x ananassa
FAN06G4428 Fragaria x ananassa
FAN10G0548 Fragaria x ananassa
FAN10G1165 Fragaria x ananassa
FvH4_7g13460 Fragaria vesca
FvH4_7g13461 Fragaria vesca
Glyma.03G015500 Glycine max
Glyma.07G075400 Glycine max
Glyma.07G075500 Glycine max
Glyma.18G224900 Glycine max
Gohir.A08G129700 Gossypium hirsutum
Gohir.A11G086400 Gossypium hirsutum
Gohir.D08G151100 Gossypium hirsutum
Gohir.D11G090600 Gossypium hirsutum
Gorai.004G156800 Gossypium raimondii
Gorai.007G096600 Gossypium raimondii
GSVIVG01027494001 Vitis vinifera
GSVIVG01027495001 Vitis vinifera
GSVIVG01027496001 Vitis vinifera
Haze_15203 Corylus avellana
Haze_15204 Corylus avellana
Hma1.2p1_0001F.1_g001770 Hydrangea macrophylla
HPP92_025613 Vanilla planifolia
Hund16950 Selenicereus undatus
Lalb_Chr10g0097321 Lupinus albus
Lalb_Chr19g0127151 Lupinus albus
Lj1g0003765 Lotus japonicus
Lj3g0012135 Lotus japonicus
Lj9A578T66 Lonicera japonica
Lsat_1_v5_gn_7_5520 Lactuca sativa
Lsat_1_v5_gn_7_5540 Lactuca sativa
Manes.05G038300 Manihot esculenta
Manes.05G038400 Manihot esculenta
Manes.05G038500 Manihot esculenta
Manes.05G038600 Manihot esculenta
MBI04_g04733_MAGBIO Magnolia biondii
MBI04_g04734_MAGBIO Magnolia biondii
MBI04_g04735_MAGBIO Magnolia biondii
MD01G1049100 Malus domestica
MD07G1126000 Malus domestica
Medtr8g032430 Medicago truncatula
Medtr8g032450 Medicago truncatula
Medtr8g433000 Medicago truncatula
MELO3C006135.2 Cucumis melo
Migut.N01424 Erythranthe guttata
MSTRG.28209 Avicennia marina
MSTRG.28210 Avicennia marina
Nitab4.5_0005423g0050 Nicotiana tabacum
Nitab4.5_0005423g0070 Nicotiana tabacum
Nitab4.5_0006421g0030 Nicotiana tabacum
Nitab4.5_0015647g0010 Nicotiana tabacum
Nn1g01410 Nelumbo nucifera
Oeu053298.1 Olea europaea
Oeu056332.1 Olea europaea
Os07g0462700 Oryza sativa ssp. japonica
Os07g0463500 Oryza sativa ssp. japonica
Peaxi162Scf00021g01111 Petunia axillaris
Peaxi162Scf00021g01218 Petunia axillaris
Peaxi162Scf00021g01219 Petunia axillaris
PGSC0003DMG400027782 Solanum tuberosum
PGSC0003DMG400027783 Solanum tuberosum
PGSC0003DMG400027784 Solanum tuberosum
Phvul.008G073300 Phaseolus vulgaris
Phvul.010G093700 Phaseolus vulgaris
Potri.002G155500 Populus trichocarpa
Potri.014G078900 Populus trichocarpa
Prupe.2G157800 Prunus persica
Prupe.2G158100 Prunus persica
Psat4g153400 Pisum sativum
Psat4g153440 Pisum sativum
Psat4g153520 Pisum sativum
PSO478G2301 Papaver somniferum
PSO478G2599 Papaver somniferum
PSO478G3215 Papaver somniferum
PSO782G0460 Papaver somniferum
QL08p050077 Quercus lobata
QL08p050082 Quercus lobata
QL08p050106 Quercus lobata
QL08p050127 Quercus lobata
QL08p050131 Quercus lobata
RcHm_v2.0_Chr1g0352831 Rosa chinensis
RcHm_v2.0_Chr1g0352841 Rosa chinensis
RcHm_v2.0_Chr5g0032131 Rosa chinensis
Rhsim01G0152700 Rhododendron simsii
Rhsim01G0152800 Rhododendron simsii
Sabra14G0057100 Salix brachista
SalBow5G0579 Salvia bowleyana
SalBow5G2036 Salvia bowleyana
SalBow5G2663 Salvia bowleyana
SalBow5G3861 Salvia bowleyana
SalBow5G4627 Salvia bowleyana
Sc23g0003150 Simmondsia chinensis
Sed0002580 Sechium edule
Sed0003987 Sechium edule
Sed0026606 Sechium edule
SEGI_14275 Sequoiadendron giganteum
SEGI_37049 Sequoiadendron giganteum
SGA_v2.0_scaffold11G05654 Striga asiatica
Solyc01g091550.3 Solanum lycopersicum
Solyc01g091560.2 Solanum lycopersicum
Solyc01g091570.3 Solanum lycopersicum
Sopen01g037320 Solanum pennellii
Sopen01g037330 Solanum pennellii
Sopen01g037340 Solanum pennellii
Sp5g02170 Schrenkiella parvula
TAR629G2445 Trochodendron aralioides
Thecc.01G365900 Theobroma cacao
Thhalv10006257m.g Eutrema salsugineum
TPR.G9818 Trifolium pratense
TWI14G0637 Tripterygium wilfordii
TWI59G0559 Tripterygium wilfordii
unitig_22.g6806 Utricularia gibba
vmacro20959 Vaccinium macrocarpon
VMungo0331G1015 Vigna mungo
VMungo1383G1115 Vigna mungo
Zm00001eb306670 Zea mays
Zm00001eb341620 Zea mays

User provided reference genes

Program Settings