Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A02p06390 Brassica napus
A03p10180 Brassica napus
A10p19380 Brassica napus
Actinidia29937 Actinidia chinensis
Actinidia30227 Actinidia chinensis
Actinidia39653 Actinidia chinensis
Ah.09g229300 Amaranthus hybridus
AL6G32180 Arabidopsis lyrata
Aqoxy7G01029 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea
AT5G20635 Arabidopsis thaliana
ATR0598G175 Amborella trichopoda
Atru.chr1.4007 Acer truncatum
Atru.chr7.1717 Acer truncatum
BcaB01g04775 Brassica carinata
BcaB05g22827 Brassica carinata
BcaB08g36515 Brassica carinata
BcaC03g13781 Brassica carinata
BcaC04g19454 Brassica carinata
BNapus_Darmor_BZH_scaffold_38p01430 Brassica napus
BolC2t07055H Brassica oleracea
BolC3t13641H Brassica oleracea
BolC9t58422H Brassica oleracea
BraA02t05584Z Brassica rapa
BraA03t10328Z Brassica rapa
BraA10t44015Z Brassica rapa
C03p11700 Brassica napus
C09p55600 Brassica napus
CAN.G595.3 Capsicum annuum
CANSAT56G4286 Cannabis sativa
CARHR192170 Cardamine hirsuta
Carub.0006s1897 Capsella rubella
Ca_02184_v3 Cicer arietinum L.
Ca_09305_v3 Cicer arietinum L.
Cc06_g12240 Coffea canephora
CDE05G2490 Ceratophyllum demersum
Ciclev10010564m.g Citrus clementina
CiPaw.03G205300 Carya illinoinensis
CiPaw.04G142500 Carya illinoinensis
ClCG03G015020 Citrullus lanatus
ClCG11G001400 Citrullus lanatus
COL.COLO4_18088 Corchorus olitorius
COL.COLO4_30738 Corchorus olitorius
Cpa.g.sc28.25 Carica papaya
CsaV3_1G041120 Cucumis sativus L.
CsaV3_2G001120 Cucumis sativus L.
CSS0005199 Camellia sinensis var. sinensis
DCAR_024755 Daucus carota
DCAR_028479 Daucus carota
Dinv25550 Davidia involucrata
Dinv42400 Davidia involucrata
Duzib150G1133 Durio zibethinus
Duzib168G2099 Durio zibethinus
Duzib187G1358 Durio zibethinus
ECA232G3825 Erigeron canadensis
Eucgr.C03259 Eucalyptus grandis
FAN19G2912 Fragaria x ananassa
FAN23G2205 Fragaria x ananassa
FAN26G0190 Fragaria x ananassa
FAN26G2608 Fragaria x ananassa
FAN26G3048 Fragaria x ananassa
FAN28G2731 Fragaria x ananassa
FvH4_1g08850 Fragaria vesca
Glyma.07G040200 Glycine max
Glyma.09G070100 Glycine max
Glyma.13G110900 Glycine max
Glyma.15G178100 Glycine max
Glyma.17G048600 Glycine max
Gohir.A06G077000 Gossypium hirsutum
Gohir.A07G015200 Gossypium hirsutum
Gohir.A13G190300 Gossypium hirsutum
Gohir.D06G076000 Gossypium hirsutum
Gohir.D07G014900 Gossypium hirsutum
Gohir.D13G196350 Gossypium hirsutum
Gorai.001G015700 Gossypium raimondii
Gorai.010G088900 Gossypium raimondii
Gorai.013G223800 Gossypium raimondii
GSVIVG01015067001 Vitis vinifera
HanXRQChr09g0276811 Helianthus annuus
HanXRQChr10g0319741 Helianthus annuus
HanXRQChr12g0354391 Helianthus annuus
Haze_26022 Corylus avellana
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla
HPP92_004363 Vanilla planifolia
HPP92_016208 Vanilla planifolia
HPP92_016238 Vanilla planifolia
HPP92_016602 Vanilla planifolia
Hund05725 Selenicereus undatus
Hund26046 Selenicereus undatus
Lalb_Chr04g0263591 Lupinus albus
Lalb_Chr07g0181211 Lupinus albus
Lalb_Chr11g0074261 Lupinus albus
Lalb_Chr13g0299401 Lupinus albus
Lj4g0012858 Lotus japonicus
Lj6g0024210 Lotus japonicus
Lj7A687T57 Lonicera japonica
Lsat_1_v5_gn_4_94241 Lactuca sativa
Lsat_1_v5_gn_5_140420 Lactuca sativa
Manes.03G041000 Manihot esculenta
Manes.11G018700 Manihot esculenta
Manes.16G094800 Manihot esculenta
MBI13_g43925_MAGBIO Magnolia biondii
MD02G1093600 Malus domestica
MD15G1218900 Malus domestica
Medtr2g042200 Medicago truncatula
Medtr4g125015 Medicago truncatula
Medtr8g021170 Medicago truncatula
MELO3C004657.2 Cucumis melo
MELO3C015527.2 Cucumis melo
Migut.L01571 Erythranthe guttata
MSTRG.10505 Avicennia marina
MSTRG.26474 Avicennia marina
Nitab4.5_0000343g0290 Nicotiana tabacum
Nitab4.5_0009541g0010 Nicotiana tabacum
Nn6g35693 Nelumbo nucifera
Nn8g38618 Nelumbo nucifera
Oeu000278.1 Olea europaea
Oeu007415.1 Olea europaea
Oeu060649.1 Olea europaea
Os03g0407400 Oryza sativa ssp. japonica
Os08g0456600 Oryza sativa ssp. japonica
Os09g0441900 Oryza sativa ssp. japonica
Peaxi162Scf00348g00817 Petunia axillaris
PGR044G0570 Punica granatum
PGSC0003DMG400027887 Solanum tuberosum
Phvul.003G130200 Phaseolus vulgaris
Potri.006G141100 Populus trichocarpa
Potri.018G062400 Populus trichocarpa
Prupe.7G197000 Prunus persica
Psat1g134600 Pisum sativum
Psat4g018440 Pisum sativum
Psat4g168440 Pisum sativum
PSO104G0196 Papaver somniferum
PSO421G0234 Papaver somniferum
QL05p003994 Quercus lobata
QL11p000998 Quercus lobata
RcHm_v2.0_Chr2g0095321 Rosa chinensis
RcHm_v2.0_Chr6g0246401 Rosa chinensis
RcHm_v2.0_Chr6g0246621 Rosa chinensis
RcHm_v2.0_Chr6g0246681 Rosa chinensis
Rhsim03G0227100 Rhododendron simsii
Rhsim05G0007000 Rhododendron simsii
Sabra06G0110200 Salix brachista
SalBow5G3024 Salvia bowleyana
SalBow5G4531 Salvia bowleyana
Sc15g0000470 Simmondsia chinensis
Sc18g0002620 Simmondsia chinensis
Sed0004681 Sechium edule
Sed0024871 Sechium edule
Sed0026577 Sechium edule
SEGI_33452 Sequoiadendron giganteum
SEGI_34897 Sequoiadendron giganteum
SGA_v2.0_scaffold21G09503 Striga asiatica
SGA_v2.0_scaffold609G53181 Striga asiatica
Solyc07g041980.3 Solanum lycopersicum
Sopen07g021560 Solanum pennellii
Sp6g23850 Schrenkiella parvula
TAR624G1266 Trochodendron aralioides
TAR636G1611 Trochodendron aralioides
THA.LOC104799616 Tarenaya hassleriana
THA.LOC104808881 Tarenaya hassleriana
THA.LOC104810996 Tarenaya hassleriana
Thecc.06G122400 Theobroma cacao
Thecc.09G075700 Theobroma cacao
Thhalv10014548m.g Eutrema salsugineum
TPR.G12599 Trifolium pratense
TPR.G16739 Trifolium pratense
TPR.G8075 Trifolium pratense
TWI34G0129 Tripterygium wilfordii
TWI63G1012 Tripterygium wilfordii
unitig_699.g19272 Utricularia gibba
unitig_85.g27251 Utricularia gibba
vmacro06347 Vaccinium macrocarpon
VMungo1215G1786 Vigna mungo
Zm00001eb019600 Zea mays
Zm00001eb100230 Zea mays
Zm00001eb314160 Zea mays

User provided reference genes

Program Settings