Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A09p52760 Brassica napus
Aa31LG10G14800 Aethionema arabicum
Aa31LG1G11400 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_117.1212 Anthoceros agrestis
Actinidia12174 Actinidia chinensis
Actinidia22774 Actinidia chinensis
Actinidia22828 Actinidia chinensis
Ah.05g173520 Amaranthus hybridus
AL1G10180 Arabidopsis lyrata
AL5G42820 Arabidopsis lyrata
Aqoxy5G03859 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.4HJ0IT Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.BCD3BN Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.YG9RMG Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.ZUXP3H Arachis hypogaea
AT1G02070 Arabidopsis thaliana
AT3G60520 Arabidopsis thaliana
ATR0006G064 Amborella trichopoda
ATR0317G107 Amborella trichopoda
Atru.chr5.213 Acer truncatum
BcaB02g07410 Brassica carinata
BcaC07g42343 Brassica carinata
BcaC08g45070 Brassica carinata
BcaNung05014 Brassica carinata
BolC8t51142H Brassica oleracea
BolC8t52915H Brassica oleracea
BraA07t30155Z Brassica rapa
BraA09t40706Z Brassica rapa
BraA09t42276Z Brassica rapa
C06p26790 Brassica napus
C08p35500 Brassica napus
C08p54050 Brassica napus
CAN.G412.3 Capsicum annuum
CAN.G899.16 Capsicum annuum
CANSAT21G1307 Cannabis sativa
CARHR000260 Cardamine hirsuta
CARHR170920 Cardamine hirsuta
Carub.0001s0016 Capsella rubella
Carub.0005s2726 Capsella rubella
Ca_07813_v3 Cicer arietinum L.
Cc02_g24570 Coffea canephora
Cfa011133 Carpinus fangiana
Ciclev10022623m.g Citrus clementina
CiPaw.13G030800 Carya illinoinensis
CiPaw.14G024300 Carya illinoinensis
ClCG05G000270 Citrullus lanatus
ClCG06G002990 Citrullus lanatus
COL.COLO4_12464 Corchorus olitorius
Cpa.g.sc149.19 Carica papaya
CsaV3_3G007420 Cucumis sativus L.
CsaV3_6G009110 Cucumis sativus L.
CSS0005332 Camellia sinensis var. sinensis
CSS0026198 Camellia sinensis var. sinensis
CSS0041341 Camellia sinensis var. sinensis
DCAR_025090 Daucus carota
DCAR_025091 Daucus carota
DCAR_031871 Daucus carota
Dinv43655 Davidia involucrata
Dinv44107 Davidia involucrata
Duzib133G1117 Durio zibethinus
Duzib138G0639 Durio zibethinus
ECA236G2569 Erigeron canadensis
ECA240G0619 Erigeron canadensis
EL10Ac1g00817 Beta vulgaris
Eucgr.D02503 Eucalyptus grandis
Eucgr.E01602 Eucalyptus grandis
FAN01G1637 Fragaria x ananassa
FAN03G2272 Fragaria x ananassa
FAN03G3486 Fragaria x ananassa
FAN06G1069 Fragaria x ananassa
FAN06G2523 Fragaria x ananassa
FAN10G2627 Fragaria x ananassa
FvH4_7g10710 Fragaria vesca
Glyma.01G076200 Glycine max
Glyma.03G117800 Glycine max
Glyma.07G109200 Glycine max
Glyma.11G165291 Glycine max
Gohir.A07G147600 Gossypium hirsutum
Gohir.A08G137500 Gossypium hirsutum
Gohir.A12G095800 Gossypium hirsutum
Gohir.D07G153700 Gossypium hirsutum
Gohir.D08G158600 Gossypium hirsutum
Gohir.D12G098400 Gossypium hirsutum
Gorai.001G175800 Gossypium raimondii
Gorai.004G164800 Gossypium raimondii
Gorai.008G107200 Gossypium raimondii
GSVIVG01018208001 Vitis vinifera
HanXRQChr03g0093301 Helianthus annuus
HanXRQChr04g0123431 Helianthus annuus
HanXRQChr06g0168871 Helianthus annuus
HanXRQChr13g0422861 Helianthus annuus
HanXRQChr16g0519671 Helianthus annuus
Haze_02729 Corylus avellana
Hma1.2p1_0341F.1_g130320 Hydrangea macrophylla
HPP92_027433 Vanilla planifolia
Hund17064 Selenicereus undatus
Lalb_Chr01g0021501 Lupinus albus
Lalb_Chr03g0039921 Lupinus albus
Lalb_Chr19g0127471 Lupinus albus
Lj1g0012963 Lotus japonicus
Lj3g0023797 Lotus japonicus
Lj9A562T33 Lonicera japonica
Lsat_1_v5_gn_4_44241 Lactuca sativa
Lsat_1_v5_gn_7_9941 Lactuca sativa
Manes.01G270500 Manihot esculenta
Manes.05G050600 Manihot esculenta
Mapoly0118s0034 Marchantia polymorpha
MBI04_g09513_MAGBIO Magnolia biondii
MBI13_g09075_MAGBIO Magnolia biondii
MD00G1166100 Malus domestica
MD07G1111800 Malus domestica
Medtr7g445390 Medicago truncatula
Medtr8g005880 Medicago truncatula
MELO3C000279.2 Cucumis melo
MELO3C005964.2 Cucumis melo
Migut.N01762 Erythranthe guttata
MSTRG.17152 Avicennia marina
MSTRG.20717 Avicennia marina
MSTRG.20718 Avicennia marina
Nitab4.5_0000706g0170 Nicotiana tabacum
Nitab4.5_0000882g0060 Nicotiana tabacum
Nitab4.5_0001501g0010 Nicotiana tabacum
Nitab4.5_0001823g0040 Nicotiana tabacum
Nn1g00971 Nelumbo nucifera
Nn6g33930 Nelumbo nucifera
Oeu000042.1 Olea europaea
Oeu009617.1 Olea europaea
Oeu009618.1 Olea europaea
Oeu051914.1 Olea europaea
Os02g0658200 Oryza sativa ssp. japonica
Os04g0551600 Oryza sativa ssp. japonica
Peaxi162Scf00377g00610 Petunia axillaris
Peaxi162Scf01068g00019 Petunia axillaris
PGR004G0574 Punica granatum
PGR042G1548 Punica granatum
PGSC0003DMG400011758 Solanum tuberosum
PGSC0003DMG400025978 Solanum tuberosum
Phvul.008G156800 Phaseolus vulgaris
Phvul.010G056400 Phaseolus vulgaris
Potri.002G142600 Populus trichocarpa
Potri.014G058300 Populus trichocarpa
Prupe.2G135200 Prunus persica
Psat3g154600 Pisum sativum
Psat4g208960 Pisum sativum
Psat4g209000 Pisum sativum
PSO063G1028 Papaver somniferum
PSO832G0403 Papaver somniferum
QL04p035739 Quercus lobata
RcHm_v2.0_Chr1g0348651 Rosa chinensis
Rhsim07G0032600 Rhododendron simsii
Sabra02G0110900 Salix brachista
Sabra14G0042500 Salix brachista
SalBow5G3293 Salvia bowleyana
Sc02g0002860 Simmondsia chinensis
Sed0014861 Sechium edule
Sed0026157 Sechium edule
SEGI_07305 Sequoiadendron giganteum
SEGI_11478 Sequoiadendron giganteum
SEGI_19925 Sequoiadendron giganteum
SEGI_22776 Sequoiadendron giganteum
SEGI_29775 Sequoiadendron giganteum
SEGI_38843 Sequoiadendron giganteum
SGA_v2.0_scaffold153G36953 Striga asiatica
SGA_v2.0_scaffold52G19189 Striga asiatica
SMO274G0065 Selaginella moellendorffii
SMO364G0458 Selaginella moellendorffii
SMO367G0729 Selaginella moellendorffii
Solyc01g090740.3 Solanum lycopersicum
Solyc10g018640.2 Solanum lycopersicum
Sopen01g036470 Solanum pennellii
Sopen10g008430 Solanum pennellii
Sp1g00230 Schrenkiella parvula
Sp5g02700 Schrenkiella parvula
TAR374G1750 Trochodendron aralioides
TAR375G0757 Trochodendron aralioides
THA.LOC104814079 Tarenaya hassleriana
THA.LOC104817209 Tarenaya hassleriana
Thecc.01G386300 Theobroma cacao
Thhalv10006310m.g Eutrema salsugineum
Thhalv10009084m.g Eutrema salsugineum
TPR.G28736 Trifolium pratense
TPR.G39106 Trifolium pratense
TWI14G1426 Tripterygium wilfordii
TWI23G0353 Tripterygium wilfordii
TWI59G1259 Tripterygium wilfordii
unitig_26.g8880 Utricularia gibba
unitig_76.g29077 Utricularia gibba
vmacro13460 Vaccinium macrocarpon
VMungo1383G1044 Vigna mungo
Zm00001eb074720 Zea mays
Zm00001eb186590 Zea mays
Zm00001eb249520 Zea mays
Zm00001eb423710 Zea mays
Zm00001eb429690 Zea mays

User provided reference genes

Program Settings