Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p30000 Brassica napus
A07p22710 Brassica napus
A09p48910 Brassica napus
Aa31LG10G10890 Aethionema arabicum
AagrBONN_evm.TU.Sc2ySwM_368.3195 Anthoceros agrestis
Actinidia00952 Actinidia chinensis
Actinidia05365 Actinidia chinensis
Actinidia13939 Actinidia chinensis
Actinidia20735 Actinidia chinensis
Ah.10g036560 Amaranthus hybridus
Ah.16g103540 Amaranthus hybridus
AL1G39350 Arabidopsis lyrata
AL5G37240 Arabidopsis lyrata
Aqoxy2G00880 Aquilegia oxysepala
Aqoxy4G02549 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.EVJ1Y4 Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.HUTA2K Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.PEV2PF Arachis hypogaea
arahy.Tifrunner.gnm1.ann1.V7QVFI Arachis hypogaea
AT3G55960 Arabidopsis thaliana
ATR0681G312 Amborella trichopoda
Atru.chr12.39 Acer truncatum
Atru.chr8.2248 Acer truncatum
AUR62012254 Chenopodium quinoa
AUR62022887 Chenopodium quinoa
BcaB01g00047 Brassica carinata
BcaB02g07671 Brassica carinata
BcaB06g29132 Brassica carinata
BcaC01g05430 Brassica carinata
BcaC02g07357 Brassica carinata
BcaC07g39913 Brassica carinata
BcaC08g44757 Brassica carinata
BolC4t28287H Brassica oleracea
BolC6t37495H Brassica oleracea
BolC8t50748H Brassica oleracea
BraA04t18507Z Brassica rapa
BraA07t29939Z Brassica rapa
BraA09t40346Z Brassica rapa
C04p67820 Brassica napus
C06p23220 Brassica napus
C08p31270 Brassica napus
CAN.G1158.2 Capsicum annuum
CANSAT35G1677 Cannabis sativa
CANSAT56G1476 Cannabis sativa
CARHR166040 Cardamine hirsuta
Carub.0004s2231 Capsella rubella
Carub.0005s2270 Capsella rubella
Ca_02149_v3 Cicer arietinum L.
Ca_05963_v3 Cicer arietinum L.
CBR_g4587 Chara braunii
Cc02_g06480 Coffea canephora
Cc05_g06020 Coffea canephora
Cc07_g09090 Coffea canephora
Cc07_g13070 Coffea canephora
Cc09_g03280 Coffea canephora
CDE10G0448 Ceratophyllum demersum
Cfa001315 Carpinus fangiana
Cfa017201 Carpinus fangiana
Ciclev10012210m.g Citrus clementina
Ciclev10031856m.g Citrus clementina
CiPaw.01G298900 Carya illinoinensis
CiPaw.02G192600 Carya illinoinensis
CiPaw.09G209600 Carya illinoinensis
ClCG07G004200 Citrullus lanatus
ClCG10G022140 Citrullus lanatus
COL.COLO4_25730 Corchorus olitorius
Cpa.g.sc19.171 Carica papaya
Cre02.g114500 Chlamydomonas reinhardtii
CsaV3_3G033770 Cucumis sativus L.
CsaV3_5G010150 Cucumis sativus L.
CSS0027339 Camellia sinensis var. sinensis
CSS0039791 Camellia sinensis var. sinensis
CSS0045343 Camellia sinensis var. sinensis
DCAR_011813 Daucus carota
Dinv10620 Davidia involucrata
Dinv17997 Davidia involucrata
Dinv23116 Davidia involucrata
Duzib114G0056 Durio zibethinus
Duzib128G1642 Durio zibethinus
ECA238G4437 Erigeron canadensis
EL10Ac2g04835 Beta vulgaris
Eucgr.B02803 Eucalyptus grandis
Eucgr.G03062 Eucalyptus grandis
FAN01G2696 Fragaria x ananassa
FAN02G3721 Fragaria x ananassa
FAN03G3333 Fragaria x ananassa
FAN05G3995 Fragaria x ananassa
FAN06G1289 Fragaria x ananassa
FAN06G3299 Fragaria x ananassa
FAN09G4810 Fragaria x ananassa
FAN10G2867 Fragaria x ananassa
FAN14G2670 Fragaria x ananassa
FAN14G4791 Fragaria x ananassa
FAN28G1014 Fragaria x ananassa
FvH4_6g11400 Fragaria vesca
FvH4_7g24520 Fragaria vesca
Glyma.02G257400 Glycine max
Glyma.14G059000 Glycine max
Gohir.A10G236800 Gossypium hirsutum
Gohir.A13G015100 Gossypium hirsutum
Gohir.D10G248600 Gossypium hirsutum
Gohir.D13G016300 Gossypium hirsutum
Gorai.011G288400 Gossypium raimondii
Gorai.013G018000 Gossypium raimondii
GSVIVG01011158001 Vitis vinifera
GSVIVG01032815001 Vitis vinifera
HanXRQChr08g0221441 Helianthus annuus
HanXRQChr14g0459711 Helianthus annuus
Haze_13179 Corylus avellana
Haze_17229 Corylus avellana
Haze_21007 Corylus avellana
Hma1.2p1_0703F.1_g206370 Hydrangea macrophylla
HPP92_006761 Vanilla planifolia
HPP92_019004 Vanilla planifolia
HPP92_019005 Vanilla planifolia
HPP92_025093 Vanilla planifolia
Hund15929 Selenicereus undatus
Lalb_Chr04g0250581 Lupinus albus
Lalb_Chr10g0105161 Lupinus albus
Lalb_Chr11g0074991 Lupinus albus
Lalb_Chr23g0276921 Lupinus albus
Lj1C956G3 Lonicera japonica
Lj6g0014618 Lotus japonicus
LjContig00357g0025174 Lotus japonicus
Lsat_1_v5_gn_2_123481 Lactuca sativa
Lsat_1_v5_gn_2_88160 Lactuca sativa
Lsat_1_v5_gn_8_11900 Lactuca sativa
Lsat_1_v5_gn_8_27481 Lactuca sativa
Manes.07G129900 Manihot esculenta
Manes.10G012000 Manihot esculenta
MBI15_g17181_MAGBIO Magnolia biondii
MCO09G259 Micromonas commoda
MD01G1153200 Malus domestica
MD04G1153700 Malus domestica
MD07G1222200 Malus domestica
MD12G1166900 Malus domestica
Medtr3g070810 Medicago truncatula
Medtr5g082660 Medicago truncatula
MELO3C009166.2 Cucumis melo
MELO3C025196.2 Cucumis melo
Migut.F00685 Erythranthe guttata
MSTRG.204 Avicennia marina
MSTRG.27334 Avicennia marina
Nitab4.5_0000666g0050 Nicotiana tabacum
Nitab4.5_0001032g0010 Nicotiana tabacum
Nitab4.5_0004629g0010 Nicotiana tabacum
Nitab4.5_0013301g0010 Nicotiana tabacum
Nitab4.5_0014663g0010 Nicotiana tabacum
Nn2g13135 Nelumbo nucifera
Oeu005840.1 Olea europaea
Oeu028344.1 Olea europaea
Oeu048248.1 Olea europaea
Oeu064384.1 Olea europaea
Os01g0833100 Oryza sativa ssp. japonica
Os05g0466800 Oryza sativa ssp. japonica
Peaxi162Scf00171g01032 Petunia axillaris
Peaxi162Scf00825g00310 Petunia axillaris
Peaxi162Scf00957g00332 Petunia axillaris
PGR031G3963 Punica granatum
PGR142G3167 Punica granatum
PGSC0003DMG400027123 Solanum tuberosum
Phvul.008G223800 Phaseolus vulgaris
Potri.006G100800 Populus trichocarpa
Potri.008G068800 Populus trichocarpa
Potri.010G188500 Populus trichocarpa
Potri.016G116700 Populus trichocarpa
Prupe.2G250400 Prunus persica
Prupe.6G277800 Prunus persica
Psat0s1465g0040 Pisum sativum
Psat5g128200 Pisum sativum
PSO339G4648 Papaver somniferum
PSO339G4994 Papaver somniferum
PSO384G2552 Papaver somniferum
PSO801G0554 Papaver somniferum
QL07p019828 Quercus lobata
QL07p035621 Quercus lobata
QL08p063235 Quercus lobata
RcHm_v2.0_Chr1g0370271 Rosa chinensis
RcHm_v2.0_Chr1g0370291 Rosa chinensis
RcHm_v2.0_Chr3g0463021 Rosa chinensis
Rhsim04G0128300 Rhododendron simsii
Rhsim09G0177400 Rhododendron simsii
Sabra06G0077500 Salix brachista
Sabra06G0077600 Salix brachista
Sabra08G0050500 Salix brachista
Sabra10G0145200 Salix brachista
SalBow6G6375 Salvia bowleyana
Sc10g0002380 Simmondsia chinensis
Sed0008999 Sechium edule
Sed0014328 Sechium edule
Sed0024436 Sechium edule
Sed0024785 Sechium edule
SEGI_25483 Sequoiadendron giganteum
SGA_v2.0_scaffold60G21004 Striga asiatica
SMO365G0007 Selaginella moellendorffii
Solyc05g052580.3 Solanum lycopersicum
Solyc06g051520.3 Solanum lycopersicum
Sopen05g031110 Solanum pennellii
Sopen06g017490 Solanum pennellii
Sp4g22460 Schrenkiella parvula
Sp5g06570 Schrenkiella parvula
Sp5g18250 Schrenkiella parvula
TAR623G0105 Trochodendron aralioides
TAR633G0423 Trochodendron aralioides
TAR636G2849 Trochodendron aralioides
TAR636G3459 Trochodendron aralioides
THA.LOC104810101 Tarenaya hassleriana
THA.LOC104810642 Tarenaya hassleriana
Thecc.10G015800 Theobroma cacao
Thhalv10006119m.g Eutrema salsugineum
Thhalv10016941m.g Eutrema salsugineum
TPR.G11212 Trifolium pratense
TPR.G38373 Trifolium pratense
TWI09G0042 Tripterygium wilfordii
TWI53G0970 Tripterygium wilfordii
TWI73G0476 Tripterygium wilfordii
TWI74G0235 Tripterygium wilfordii
unitig_0.g2172 Utricularia gibba
unitig_0.g239 Utricularia gibba
vmacro08877 Vaccinium macrocarpon
vmacro10040 Vaccinium macrocarpon
VMungo0647G2393 Vigna mungo
Zm00001eb148930 Zea mays
Zm00001eb351710 Zea mays
Zm00001eb368330 Zea mays

User provided reference genes

Program Settings