Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Organism
A04p01150 Brassica napus
A08p37670 Brassica napus
A09p53410 Brassica napus
Aa31LG1G10060 Aethionema arabicum
Aa31LG1G10080 Aethionema arabicum
Aa31LG1G27890 Aethionema arabicum
Aa31LG9G15670 Aethionema arabicum
Actinidia13220 Actinidia chinensis
Actinidia25867 Actinidia chinensis
Ah.10g033630 Amaranthus hybridus
Ah.11g043940 Amaranthus hybridus
AL1G11782 Arabidopsis lyrata
AL1G53570 Arabidopsis lyrata
AL5G43620 Arabidopsis lyrata
Aqoxy7G02983 Aquilegia oxysepala
Aqoxy7G03329 Aquilegia oxysepala
arahy.Tifrunner.gnm1.ann1.J1JT5X Arachis hypogaea
AT1G02420 Arabidopsis thaliana
AT3G61360 Arabidopsis thaliana
ATR0580G194 Amborella trichopoda
ATR0693G157 Amborella trichopoda
ATR0730G080 Amborella trichopoda
Atru.chr4.952 Acer truncatum
Atru.chr5.926 Acer truncatum
AUR62020699 Chenopodium quinoa
AUR62020700 Chenopodium quinoa
AUR62028025 Chenopodium quinoa
AUR62038751 Chenopodium quinoa
BcaB01g06132 Brassica carinata
BcaB01g06135 Brassica carinata
BcaB03g13512 Brassica carinata
BcaB03g15780 Brassica carinata
BcaB03g16638 Brassica carinata
BcaC07g40632 Brassica carinata
BcaC07g40633 Brassica carinata
BolC3t12581H Brassica oleracea
BolC8t51204H Brassica oleracea
BraA04t15832Z Brassica rapa
BraA08t35663Z Brassica rapa
BraA09t40767Z Brassica rapa
C03p00150 Brassica napus
C08p36220 Brassica napus
CAN.G175.21 Capsicum annuum
CAN.G231.30 Capsicum annuum
CAN.G439.2 Capsicum annuum
CANSAT78G1923 Cannabis sativa
CANSAT80G0566 Cannabis sativa
CARHR001750 Cardamine hirsuta
CARHR171700 Cardamine hirsuta
Carub.0001s0150 Capsella rubella
Carub.0005s2803 Capsella rubella
Ca_04108_v3 Cicer arietinum L.
Ca_04117_v3 Cicer arietinum L.
Ca_10260_v3 Cicer arietinum L.
Cc01_g08170 Coffea canephora
Cc10_g14690 Coffea canephora
CDE07G0739 Ceratophyllum demersum
CDE08G0093 Ceratophyllum demersum
CDE08G1283 Ceratophyllum demersum
Cfa004857 Carpinus fangiana
Cfa006303 Carpinus fangiana
Ciclev10019795m.g Citrus clementina
Ciclev10019823m.g Citrus clementina
Ciclev10024535m.g Citrus clementina
Ciclev10027356m.g Citrus clementina
CiPaw.07G121100 Carya illinoinensis
CiPaw.16G103800 Carya illinoinensis
ClCG01G005530 Citrullus lanatus
ClCG10G011660 Citrullus lanatus
COL.COLO4_07473 Corchorus olitorius
COL.COLO4_23183 Corchorus olitorius
Cpa.g.sc33.110 Carica papaya
Cpa.g.sc932.1 Carica papaya
CsaV3_3G031700 Cucumis sativus L.
CsaV3_5G005760 Cucumis sativus L.
CSS0016374 Camellia sinensis var. sinensis
CSS0020082 Camellia sinensis var. sinensis
CSS0020540 Camellia sinensis var. sinensis
CSS0027768 Camellia sinensis var. sinensis
CSS0033752 Camellia sinensis var. sinensis
CSS0033889 Camellia sinensis var. sinensis
CSS0038737 Camellia sinensis var. sinensis
CSS0042843 Camellia sinensis var. sinensis
DCAR_013250 Daucus carota
DCAR_017780 Daucus carota
Dinv06600 Davidia involucrata
Dinv21315 Davidia involucrata
Dinv36297 Davidia involucrata
Duzib138G0793 Durio zibethinus
Duzib235G1487 Durio zibethinus
ECA240G2382 Erigeron canadensis
EL10Ac5g11611 Beta vulgaris
EL10Ac8g19260 Beta vulgaris
Eucgr.D00236 Eucalyptus grandis
Eucgr.G01125 Eucalyptus grandis
Eucgr.G01126 Eucalyptus grandis
FAN06G2480 Fragaria x ananassa
FAN08G2236 Fragaria x ananassa
FAN10G1410 Fragaria x ananassa
FAN18G3877 Fragaria x ananassa
FvH4_5g32610 Fragaria vesca
FvH4_7g04300 Fragaria vesca
Glyma.02G009700 Glycine max
Glyma.10G010250 Glycine max
Glyma.19G010600 Glycine max
Gohir.A11G107600 Gossypium hirsutum
Gohir.A13G116700 Gossypium hirsutum
Gohir.D11G112400 Gossypium hirsutum
Gohir.D13G119800 Gossypium hirsutum
Gorai.007G120700 Gossypium raimondii
Gorai.013G134200 Gossypium raimondii
GSVIVG01012782001 Vitis vinifera
HanXRQChr03g0080361 Helianthus annuus
Haze_04486 Corylus avellana
Haze_05093 Corylus avellana
Hma1.2p1_0143F.1_g064525 Hydrangea macrophylla
Hma1.2p1_0178F.1_g078560 Hydrangea macrophylla
Hma1.2p1_0178F.1_g078570 Hydrangea macrophylla
HPP92_010769 Vanilla planifolia
HPP92_010770 Vanilla planifolia
HPP92_015243 Vanilla planifolia
Lalb_Chr02g0146981 Lupinus albus
Lalb_Chr10g0093391 Lupinus albus
Lj1g0018465 Lotus japonicus
Lj1P893G46 Lonicera japonica
Lj2P848T5 Lonicera japonica
Lj2P866T8 Lonicera japonica
Lj2P868T14 Lonicera japonica
Lj5g0022385 Lotus japonicus
Lsat_1_v5_gn_9_88941 Lactuca sativa
Manes.03G196200 Manihot esculenta
Manes.04G149800 Manihot esculenta
Manes.05G012004 Manihot esculenta
Manes.10G117700 Manihot esculenta
Manes.10G117901 Manihot esculenta
MBI14_g08138_MAGBIO Magnolia biondii
MBI19_g32692_MAGBIO Magnolia biondii
MD03G1030500 Malus domestica
MD08G1216300 Malus domestica
MD11G1035500 Malus domestica
Medtr1g086500 Medicago truncatula
MELO3C005377.2 Cucumis melo
MELO3C012922.2 Cucumis melo
Migut.C01014 Erythranthe guttata
Migut.D02462 Erythranthe guttata
MSTRG.18804 Avicennia marina
Nitab4.5_0000201g0210 Nicotiana tabacum
Nitab4.5_0008410g0010 Nicotiana tabacum
Nitab4.5_0009560g0010 Nicotiana tabacum
Nitab4.5_0010112g0050 Nicotiana tabacum
Nn2g12485 Nelumbo nucifera
Nn2g12694 Nelumbo nucifera
Oeu032980.1 Olea europaea
Oeu046013.1 Olea europaea
Oeu051493.1 Olea europaea
Os03g0208600 Oryza sativa ssp. japonica
Os06g0694600 Oryza sativa ssp. japonica
Peaxi162Scf00217g00003 Petunia axillaris
Peaxi162Scf00765g00014 Petunia axillaris
PGR031G3850 Punica granatum
PGR083G2073 Punica granatum
PGSC0003DMG400003011 Solanum tuberosum
PGSC0003DMG400008615 Solanum tuberosum
Phvul.004G017900 Phaseolus vulgaris
Phvul.011G069000 Phaseolus vulgaris
Potri.001G130400 Populus trichocarpa
Potri.007G079400 Populus trichocarpa
Prupe.1G549200 Prunus persica
Prupe.2G028200 Prunus persica
Psat3g196640 Pisum sativum
Psat6g159720 Pisum sativum
PSO170G3686 Papaver somniferum
QL02p045829 Quercus lobata
QL07p027161 Quercus lobata
QL12p038622 Quercus lobata
RcHm_v2.0_Chr1g0329261 Rosa chinensis
RcHm_v2.0_Chr7g0230241 Rosa chinensis
Rhsim01G0292600 Rhododendron simsii
Rhsim02G0205300 Rhododendron simsii
Rhsim05G0067200 Rhododendron simsii
Sabra01G0100800 Salix brachista
Sabra07G0066600 Salix brachista
SalBow6G4384 Salvia bowleyana
SalBow7G2460 Salvia bowleyana
Sc04g0003920 Simmondsia chinensis
Sc05g0000230 Simmondsia chinensis
Sc07g0006310 Simmondsia chinensis
Sed0013624 Sechium edule
Sed0027709 Sechium edule
SEGI_01398 Sequoiadendron giganteum
SEGI_15112 Sequoiadendron giganteum
SEGI_39646 Sequoiadendron giganteum
SGA_v2.0_scaffold48G17965 Striga asiatica
SGA_v2.0_scaffold7G04017 Striga asiatica
SHI34114 Sapria himalayana
Solyc04g071280.3 Solanum lycopersicum
Solyc11g071670.2 Solanum lycopersicum
Sopen04g027230 Solanum pennellii
Sopen11g029340 Solanum pennellii
Sp1g01510 Schrenkiella parvula
Sp5g02040 Schrenkiella parvula
TAR633G0061 Trochodendron aralioides
TAR633G0505 Trochodendron aralioides
TAR633G1464 Trochodendron aralioides
TAR636G0541 Trochodendron aralioides
THA.LOC104812722 Tarenaya hassleriana
THA.LOC104815916 Tarenaya hassleriana
Thecc.01G320000 Theobroma cacao
Thecc.06G053600 Theobroma cacao
Thhalv10006474m.g Eutrema salsugineum
Thhalv10007463m.g Eutrema salsugineum
TPR.G3049 Trifolium pratense
TPR.G4337 Trifolium pratense
TWI09G0319 Tripterygium wilfordii
TWI14G0220 Tripterygium wilfordii
unitig_26.g10218 Utricularia gibba
vmacro21895 Vaccinium macrocarpon
VMungo0016G0002 Vigna mungo
VMungo0464G0615 Vigna mungo
VMungo0464G1133 Vigna mungo
VMungo0647G0206 Vigna mungo
VMungo1127G0634 Vigna mungo
VMungo1383G0057 Vigna mungo
VMungo1383G1437 Vigna mungo
Zm00001eb007190 Zea mays
Zm00001eb226310 Zea mays

User provided reference genes

Program Settings